Csor.00g231410 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g231410
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	ESCRT-related protein CHMP1B
Location	Csor_Chr08: 4651402 .. 4652013 (-)
RNA-Seq Expression	Csor.00g231410
Synteny	Csor.00g231410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAACACCGACAAATTGTTGAATCAAATCATGGAATTGAAGTTCACTTCGAAGTCGCTGCAGCGCCAAGCCAGGAAGTGCGAGAAGGAGGAGAAAGCCGAGAAGCTCAAGATCAAGAAGGCTATGGAGAAAGGCAACGTTGATGGAGCTCGAATTTACGCGGAGAACGCGATCCGTAAACGAACAGAACAGATGAACTATCTCCGCCTTTCTTCCAGGCTTGATGCTGTTGTGGCTCGTCTCGATACGCAGGCGAAGATGACCACGATCAATAAGTCCATGGCGTCGATCGTCAAGTCCTTGGAATCTTCTTTGACGACTGGGAATTTGCAGAAGATGTCTGAGACTATGGATCAGTTTGAGAAGCAGTTTGTGAATATGGAGGTCCAGGCAGAATTCATGGAAAATGCAATGGCTGGATCGACGTCGCTCTCGACGCCGGAAGGAGAAGTCAACAGCTTGATGCAGCAGGTGGCGGACGATTACGGTCTGGAAGTCTCCGTCGGGCTACCACAGCCGGCGTCGCATGCAGTGCCGACCAAGGAGACCGAGAAAGTTGACGAGGATGACTTATCGAGGCGCCTTGCAGAGCTTAAGGCCAGAGGTTAA

mRNA sequence

ATGGGGAACACCGACAAATTGTTGAATCAAATCATGGAATTGAAGTTCACTTCGAAGTCGCTGCAGCGCCAAGCCAGGAAGTGCGAGAAGGAGGAGAAAGCCGAGAAGCTCAAGATCAAGAAGGCTATGGAGAAAGGCAACGTTGATGGAGCTCGAATTTACGCGGAGAACGCGATCCGTAAACGAACAGAACAGATGAACTATCTCCGCCTTTCTTCCAGGCTTGATGCTGTTGTGGCTCGTCTCGATACGCAGGCGAAGATGACCACGATCAATAAGTCCATGGCGTCGATCGTCAAGTCCTTGGAATCTTCTTTGACGACTGGGAATTTGCAGAAGATGTCTGAGACTATGGATCAGTTTGAGAAGCAGTTTGTGAATATGGAGGTCCAGGCAGAATTCATGGAAAATGCAATGGCTGGATCGACGTCGCTCTCGACGCCGGAAGGAGAAGTCAACAGCTTGATGCAGCAGGTGGCGGACGATTACGGTCTGGAAGTCTCCGTCGGGCTACCACAGCCGGCGTCGCATGCAGTGCCGACCAAGGAGACCGAGAAAGTTGACGAGGATGACTTATCGAGGCGCCTTGCAGAGCTTAAGGCCAGAGGTTAA

Coding sequence (CDS)

ATGGGGAACACCGACAAATTGTTGAATCAAATCATGGAATTGAAGTTCACTTCGAAGTCGCTGCAGCGCCAAGCCAGGAAGTGCGAGAAGGAGGAGAAAGCCGAGAAGCTCAAGATCAAGAAGGCTATGGAGAAAGGCAACGTTGATGGAGCTCGAATTTACGCGGAGAACGCGATCCGTAAACGAACAGAACAGATGAACTATCTCCGCCTTTCTTCCAGGCTTGATGCTGTTGTGGCTCGTCTCGATACGCAGGCGAAGATGACCACGATCAATAAGTCCATGGCGTCGATCGTCAAGTCCTTGGAATCTTCTTTGACGACTGGGAATTTGCAGAAGATGTCTGAGACTATGGATCAGTTTGAGAAGCAGTTTGTGAATATGGAGGTCCAGGCAGAATTCATGGAAAATGCAATGGCTGGATCGACGTCGCTCTCGACGCCGGAAGGAGAAGTCAACAGCTTGATGCAGCAGGTGGCGGACGATTACGGTCTGGAAGTCTCCGTCGGGCTACCACAGCCGGCGTCGCATGCAGTGCCGACCAAGGAGACCGAGAAAGTTGACGAGGATGACTTATCGAGGCGCCTTGCAGAGCTTAAGGCCAGAGGTTAA

Protein sequence

MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIRKRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQFEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVPTKETEKVDEDDLSRRLAELKARG

Homology

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BLAST of Csor.00g231410 vs. ExPASy Swiss-Prot
Match: Q9SSM4 (ESCRT-related protein CHMP1B OS=Arabidopsis thaliana OX=3702 GN=CHMP1B PE=1 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 4.1e-94
Identity = 185/203 (91.13%), Postives = 195/203 (96.06%), Query Frame = 0


Query: 1   MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNTDKL+NQI +LKFTSKSLQRQ+RKCEKEEKAEKLK+KKA+EKGN+DGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFDLKFTSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ 120
           KR+EQMNYLRL+SRLDAVVARLDTQAKMTTI KSM +IVKSLESSL TGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLASRLDAVVARLDTQAKMTTITKSMTNIVKSLESSLATGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TKETEKVDEDDLSRRLAELKARG 204
           TK  EKVDEDDLSRRLAELKARG
Sbjct: 181 TKTEEKVDEDDLSRRLAELKARG 203

[Close]

BLAST of Csor.00g231410 vs. ExPASy Swiss-Prot
Match: Q8LE58 (ESCRT-related protein CHMP1A OS=Arabidopsis thaliana OX=3702 GN=CHMP1A PE=1 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 2.6e-93
Identity = 183/203 (90.15%), Postives = 195/203 (96.06%), Query Frame = 0


Query: 1   MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNTDKL+NQI ELKFTSKSLQRQARKCEKEE++EKLK+KKA+EKGN+DGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFELKFTSKSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ 120
           KR+EQMNYLRLSSRLDAVVARLDTQAKM TI KSM +IVKSLESSLTTGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLSSRLDAVVARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFM+NAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HA+P
Sbjct: 121 FEKQFVNMEVQAEFMDNAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TKETEKVDEDDLSRRLAELKARG 204
           TK  EKV+EDDL+RRLAELKARG
Sbjct: 181 TKTEEKVEEDDLTRRLAELKARG 203

[Close]

BLAST of Csor.00g231410 vs. ExPASy Swiss-Prot
Match: Q84VG1 (ESCRT-related protein CHMP1 OS=Oryza sativa subsp. japonica OX=39947 GN=CHMP1 PE=2 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.3e-84
Identity = 174/205 (84.88%), Postives = 188/205 (91.71%), Query Frame = 0


Query: 1   MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGN +KL+ QI +LKFTSKSLQRQARKCEKEEK +KLK+KKA+EKGN+DGARIYAENAIR
Sbjct: 1   MGNPEKLMTQIFDLKFTSKSLQRQARKCEKEEKEQKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ 120
           KRTE MNYLRL+SRLDAVVARLDTQAKM  I KSMA+IVKSL+S+L TGNLQKMSETMD 
Sbjct: 61  KRTEHMNYLRLASRLDAVVARLDTQAKMQVIGKSMANIVKSLDSALATGNLQKMSETMDN 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FE+QFVNMEVQAEFME AMAGSTSLSTPE EVNSLMQQVADDYGLEVSVGLPQ A+HA+P
Sbjct: 121 FERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADDYGLEVSVGLPQAAAHAIP 180

Query: 181 -TKETEK-VDEDDLSRRLAELKARG 204
             KE EK VDEDDLSRRLAELKARG
Sbjct: 181 AAKEKEKAVDEDDLSRRLAELKARG 205

[Close]

BLAST of Csor.00g231410 vs. ExPASy Swiss-Prot
Match: O96552 (Charged multivesicular body protein 1 OS=Dictyostelium discoideum OX=44689 GN=chmp1 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 8.6e-44
Identity = 92/194 (47.42%), Postives = 152/194 (78.35%), Query Frame = 0


Query: 9   NQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIRKRTEQMNY 68
           NQ+ +LKFTSK L++Q++K E+ EKA+K+K+KKA+E+GN+DGARIYA+NAIR++ + +NY
Sbjct: 3   NQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNY 62

Query: 69  LRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQFEKQFVNM 128
           LRL+SR+DAV +R++T  +M ++  SMA+IVKS+E S+   +L+K+++ MDQFE+QF ++
Sbjct: 63  LRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFEDL 122

Query: 129 EVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVPTKETEKVD 188
           +VQ+ ++ENAM  +T+LSTP  +V+ L+ QVAD++GL V + +      + P+++ ++ +
Sbjct: 123 DVQSVYVENAMNQTTTLSTPADQVDLLISQVADEHGLNVGMQM-----GSAPSEKVQQGE 182

Query: 189 EDDLSRRLAELKAR 203
            D+L+ RL  LK +
Sbjct: 183 TDELTERLNRLKQK 191

[Close]

BLAST of Csor.00g231410 vs. ExPASy Swiss-Prot
Match: Q5E994 (Charged multivesicular body protein 1b OS=Bos taurus OX=9913 GN=CHMP1B PE=2 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.3e-43
Identity = 96/200 (48.00%), Postives = 150/200 (75.00%), Query Frame = 0


Query: 1   MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60
           M N +K    +  LKF +K L R A+KC+KEEKAEK KIKKA++KGN++ ARI+AENAIR
Sbjct: 1   MSNMEK---HLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ 120
           ++ + +N+LR+S+R+DAV AR+ T   M  + KSMA +VKS++++L T NL+K+S  MD+
Sbjct: 61  QKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDK 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FE QF  ++VQ + ME+ M+ +T+L+TP+G+V+ L+Q++AD+ GL++++ LPQ  + +V 
Sbjct: 121 FEHQFETLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAGLDLNMELPQGQTGSVG 180

Query: 181 TKETEKVDEDDLSRRLAELK 201
           T      ++D+LS+RLA L+
Sbjct: 181 T-SVASAEQDELSQRLARLR 196

[Close]

BLAST of Csor.00g231410 vs. NCBI nr
Match: XP_022964312.1 (ESCRT-related protein CHMP1B [Cucurbita moschata] >XP_023000394.1 ESCRT-related protein CHMP1B [Cucurbita maxima] >XP_023513530.1 ESCRT-related protein CHMP1B [Cucurbita pepo subsp. pepo] >KAG6593503.1 ESCRT-related protein CHMP1A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025850.1 ESCRT-related protein CHMP1A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 374 bits (960), Expect = 3.79e-130
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLSRRLAELKARG 203
           TKETEKVDEDDLSRRLAELKARG
Sbjct: 181 TKETEKVDEDDLSRRLAELKARG 203

[Close]

BLAST of Csor.00g231410 vs. NCBI nr
Match: XP_022144640.1 (ESCRT-related protein CHMP1B [Momordica charantia])

HSP 1 Score: 368 bits (945), Expect = 7.34e-128
Identity = 199/203 (98.03%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNT+KLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSL TGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLSRRLAELKARG 203
           T+ETEKVDEDDL+RRLAELKARG
Sbjct: 181 TRETEKVDEDDLTRRLAELKARG 203

[Close]

BLAST of Csor.00g231410 vs. NCBI nr
Match: XP_004141672.1 (ESCRT-related protein CHMP1B [Cucumis sativus] >XP_008462374.1 PREDICTED: ESCRT-related protein CHMP1B [Cucumis melo] >KAA0059449.1 ESCRT-related protein CHMP1B [Cucumis melo var. makuwa] >KGN45545.1 hypothetical protein Csa_015849 [Cucumis sativus] >TYK03875.1 ESCRT-related protein CHMP1B [Cucumis melo var. makuwa])

HSP 1 Score: 367 bits (942), Expect = 2.10e-127
Identity = 198/203 (97.54%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNT+KLLNQIMELKFTSKSLQRQARKCEKEEK+EKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLES+L TGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLSRRLAELKARG 203
           TKETEKVDEDDL+RRLAELKARG
Sbjct: 181 TKETEKVDEDDLTRRLAELKARG 203

[Close]

BLAST of Csor.00g231410 vs. NCBI nr
Match: XP_038896979.1 (ESCRT-related protein CHMP1B [Benincasa hispida])

HSP 1 Score: 366 bits (939), Expect = 6.03e-127
Identity = 198/203 (97.54%), Postives = 201/203 (99.01%), Query Frame = 0


Query: 1   MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNT+KLLNQIMELKFTSKSLQRQARKCEKEEK+EKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSL TGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVN LMQQVADDYGLEVSVGLPQPASHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNILMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLSRRLAELKARG 203
           TKETEKVDEDDL+RRLAELKARG
Sbjct: 181 TKETEKVDEDDLTRRLAELKARG 203

[Close]

BLAST of Csor.00g231410 vs. NCBI nr
Match: XP_022954345.1 (ESCRT-related protein CHMP1B-like [Cucurbita moschata] >XP_023549216.1 ESCRT-related protein CHMP1B-like [Cucurbita pepo subsp. pepo] >KAG6575490.1 ESCRT-related protein CHMP1A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014033.1 ESCRT-related protein CHMP1A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 365 bits (936), Expect = 1.73e-126
Identity = 197/203 (97.04%), Postives = 201/203 (99.01%), Query Frame = 0


Query: 1   MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNT+KLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKM+TINKSMASIVKSLESSL TGNLQKMSE MDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMASIVKSLESSLATGNLQKMSENMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAMP 180

Query: 181 TKETEKVDEDDLSRRLAELKARG 203
           TKETEKVDEDDL+RRLAELKARG
Sbjct: 181 TKETEKVDEDDLTRRLAELKARG 203

[Close]

BLAST of Csor.00g231410 vs. ExPASy TrEMBL
Match: A0A6J1KJS6 (ESCRT-related protein CHMP1B OS=Cucurbita maxima OX=3661 GN=LOC111494652 PE=4 SV=1)

HSP 1 Score: 374 bits (960), Expect = 1.84e-130
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLSRRLAELKARG 203
           TKETEKVDEDDLSRRLAELKARG
Sbjct: 181 TKETEKVDEDDLSRRLAELKARG 203

[Close]

BLAST of Csor.00g231410 vs. ExPASy TrEMBL
Match: A0A6J1HHH0 (ESCRT-related protein CHMP1B OS=Cucurbita moschata OX=3662 GN=LOC111464364 PE=4 SV=1)

HSP 1 Score: 374 bits (960), Expect = 1.84e-130
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLSRRLAELKARG 203
           TKETEKVDEDDLSRRLAELKARG
Sbjct: 181 TKETEKVDEDDLSRRLAELKARG 203

[Close]

BLAST of Csor.00g231410 vs. ExPASy TrEMBL
Match: A0A6J1CS80 (ESCRT-related protein CHMP1B OS=Momordica charantia OX=3673 GN=LOC111014278 PE=4 SV=1)

HSP 1 Score: 368 bits (945), Expect = 3.55e-128
Identity = 199/203 (98.03%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNT+KLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSL TGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLSRRLAELKARG 203
           T+ETEKVDEDDL+RRLAELKARG
Sbjct: 181 TRETEKVDEDDLTRRLAELKARG 203

[Close]

BLAST of Csor.00g231410 vs. ExPASy TrEMBL
Match: A0A5A7V0Y1 (ESCRT-related protein CHMP1B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00700 PE=4 SV=1)

HSP 1 Score: 367 bits (942), Expect = 1.02e-127
Identity = 198/203 (97.54%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNT+KLLNQIMELKFTSKSLQRQARKCEKEEK+EKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLES+L TGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLSRRLAELKARG 203
           TKETEKVDEDDL+RRLAELKARG
Sbjct: 181 TKETEKVDEDDLTRRLAELKARG 203

[Close]

BLAST of Csor.00g231410 vs. ExPASy TrEMBL
Match: A0A0A0K779 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452000 PE=4 SV=1)

HSP 1 Score: 367 bits (942), Expect = 1.02e-127
Identity = 198/203 (97.54%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNT+KLLNQIMELKFTSKSLQRQARKCEKEEK+EKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLES+L TGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLSRRLAELKARG 203
           TKETEKVDEDDL+RRLAELKARG
Sbjct: 181 TKETEKVDEDDLTRRLAELKARG 203

[Close]

BLAST of Csor.00g231410 vs. TAIR 10
Match: AT1G73030.1 (SNF7 family protein )

HSP 1 Score: 345.5 bits (885), Expect = 2.9e-95
Identity = 185/203 (91.13%), Postives = 195/203 (96.06%), Query Frame = 0


Query: 1   MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNTDKL+NQI +LKFTSKSLQRQ+RKCEKEEKAEKLK+KKA+EKGN+DGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFDLKFTSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ 120
           KR+EQMNYLRL+SRLDAVVARLDTQAKMTTI KSM +IVKSLESSL TGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLASRLDAVVARLDTQAKMTTITKSMTNIVKSLESSLATGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TKETEKVDEDDLSRRLAELKARG 204
           TK  EKVDEDDLSRRLAELKARG
Sbjct: 181 TKTEEKVDEDDLSRRLAELKARG 203

[Close]

BLAST of Csor.00g231410 vs. TAIR 10
Match: AT1G17730.1 (vacuolar protein sorting 46.1 )

HSP 1 Score: 342.8 bits (878), Expect = 1.9e-94
Identity = 183/203 (90.15%), Postives = 195/203 (96.06%), Query Frame = 0


Query: 1   MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNTDKL+NQI ELKFTSKSLQRQARKCEKEE++EKLK+KKA+EKGN+DGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFELKFTSKSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ 120
           KR+EQMNYLRLSSRLDAVVARLDTQAKM TI KSM +IVKSLESSLTTGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLSSRLDAVVARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFM+NAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HA+P
Sbjct: 121 FEKQFVNMEVQAEFMDNAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TKETEKVDEDDLSRRLAELKARG 204
           TK  EKV+EDDL+RRLAELKARG
Sbjct: 181 TKTEEKVEEDDLTRRLAELKARG 203

[Close]

BLAST of Csor.00g231410 vs. TAIR 10
Match: AT2G06530.1 (SNF7 family protein )

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-08
Identity = 41/161 (25.47%), Postives = 82/161 (50.93%), Query Frame = 0


Query: 19  KSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIRKRTEQMNYLRLSSRLDAV 78
           + ++R+ +  + +EK    +IKK  ++G +   ++ A++ IR R +   + +L S+L  V
Sbjct: 28  REIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGV 87

Query: 79  VARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQFEKQFVNMEVQAEFMENA 138
             R+ T      + ++M  + K++       NL  + + M +FE+Q   ME+ +E M +A
Sbjct: 88  SLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDA 147

Query: 139 MAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAV 180
           +  +      E E   L+ QV D+ G++++  L    S AV
Sbjct: 148 IDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNAPSGAV 188

[Close]

BLAST of Csor.00g231410 vs. TAIR 10
Match: AT5G44560.1 (SNF7 family protein )

HSP 1 Score: 53.1 bits (126), Expect = 3.0e-07
Identity = 50/209 (23.92%), Postives = 87/209 (41.63%), Query Frame = 0


Query: 5   DKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIRKRTE 64
           D L     E+   ++ ++R+    + EEK    +IKK  + GN    +I A   +R R +
Sbjct: 12  DALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQ 71

Query: 65  QMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQFEKQ 124
             N     +++  V          T+I+  M    K++ +        K ++ +  F+KQ
Sbjct: 72  ITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQ 131

Query: 125 FVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ----------- 184
              +++  E M  A+  +      E E   L  QV D+ G+ V+  L             
Sbjct: 132 SAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTA 191

Query: 185 --PASHAVPTKETEKVDEDDLSRRLAELK 201
             PAS A   K +E  + D+L +RLA L+
Sbjct: 192 APPASTAATNKNSESSEVDELEKRLASLR 220

[Close]

BLAST of Csor.00g231410 vs. TAIR 10
Match: AT5G44560.2 (SNF7 family protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.5e-06
Identity = 47/196 (23.98%), Postives = 83/196 (42.35%), Query Frame = 0


Query: 18  SKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIRKRTEQMNYLRLSSRLDA 77
           ++ ++R+    + EEK    +IKK  + GN    +I A   +R R +  N     +++  
Sbjct: 5   TRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRG 64

Query: 78  VVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQFEKQFVNMEVQAEFMEN 137
           V          T+I+  M    K++ +        K ++ +  F+KQ   +++  E M  
Sbjct: 65  VTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSE 124

Query: 138 AMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-------------PASHAVPTKET 197
           A+  +      E E   L  QV D+ G+ V+  L               PAS A   K +
Sbjct: 125 AIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTAATNKNS 184

Query: 198 EKVDEDDLSRRLAELK 201
           E  + D+L +RLA L+
Sbjct: 185 ESSEVDELEKRLASLR 200

The following BLAST results are available for this feature:

BLAST of Csor.00g231410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SSM4	4.1e-94	91.13	ESCRT-related protein CHMP1B OS=Arabidopsis thaliana OX=3702 GN=CHMP1B PE=1 SV=1	[more]
Q8LE58	2.6e-93	90.15	ESCRT-related protein CHMP1A OS=Arabidopsis thaliana OX=3702 GN=CHMP1A PE=1 SV=1	[more]
Q84VG1	1.3e-84	84.88	ESCRT-related protein CHMP1 OS=Oryza sativa subsp. japonica OX=39947 GN=CHMP1 PE...	[more]
O96552	8.6e-44	47.42	Charged multivesicular body protein 1 OS=Dictyostelium discoideum OX=44689 GN=ch...	[more]
Q5E994	3.3e-43	48.00	Charged multivesicular body protein 1b OS=Bos taurus OX=9913 GN=CHMP1B PE=2 SV=1	[more]

BLAST of Csor.00g231410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964312.1	3.79e-130	100.00	ESCRT-related protein CHMP1B [Cucurbita moschata] >XP_023000394.1 ESCRT-related ...	[more]
XP_022144640.1	7.34e-128	98.03	ESCRT-related protein CHMP1B [Momordica charantia]	[more]
XP_004141672.1	2.10e-127	97.54	ESCRT-related protein CHMP1B [Cucumis sativus] >XP_008462374.1 PREDICTED: ESCRT-...	[more]
XP_038896979.1	6.03e-127	97.54	ESCRT-related protein CHMP1B [Benincasa hispida]	[more]
XP_022954345.1	1.73e-126	97.04	ESCRT-related protein CHMP1B-like [Cucurbita moschata] >XP_023549216.1 ESCRT-rel...	[more]

BLAST of Csor.00g231410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KJS6	1.84e-130	100.00	ESCRT-related protein CHMP1B OS=Cucurbita maxima OX=3661 GN=LOC111494652 PE=4 SV...	[more]
A0A6J1HHH0	1.84e-130	100.00	ESCRT-related protein CHMP1B OS=Cucurbita moschata OX=3662 GN=LOC111464364 PE=4 ...	[more]
A0A6J1CS80	3.55e-128	98.03	ESCRT-related protein CHMP1B OS=Momordica charantia OX=3673 GN=LOC111014278 PE=4...	[more]
A0A5A7V0Y1	1.02e-127	97.54	ESCRT-related protein CHMP1B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A0A0K779	1.02e-127	97.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452000 PE=4 SV=1	[more]

BLAST of Csor.00g231410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73030.1	2.9e-95	91.13	SNF7 family protein	[more]
AT1G17730.1	1.9e-94	90.15	vacuolar protein sorting 46.1	[more]
AT2G06530.1	1.2e-08	25.47	SNF7 family protein	[more]
AT5G44560.1	3.0e-07	23.92	SNF7 family protein	[more]
AT5G44560.2	1.5e-06	23.98	SNF7 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 182..202
None	No IPR available	COILS	Coil	Coil	coord: 11..45
None	No IPR available	COILS	Coil	Coil	coord: 111..138
None	No IPR available	GENE3D	6.10.140.1230		coord: 3..173 e-value: 1.8E-38 score: 134.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..191
None	No IPR available	PANTHER	PTHR10476:SF57	ESCRT-RELATED PROTEIN CHMP1A-RELATED	coord: 5..203
None	No IPR available	PANTHER	PTHR10476	CHARGED MULTIVESICULAR BODY PROTEIN	coord: 5..203
IPR005024	Snf7 family	PFAM	PF03357	Snf7	coord: 11..176 e-value: 3.7E-12 score: 46.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g231410.m01	Csor.00g231410.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032509	endosome transport via multivesicular body sorting pathway
biological_process	GO:0045324	late endosome to vacuole transport
biological_process	GO:0015031	protein transport
biological_process	GO:0007034	vacuolar transport
cellular_component	GO:0000815	ESCRT III complex
cellular_component	GO:0005771	multivesicular body