Csor.00g229760 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g229760
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Triosephosphate isomerase
Location	Csor_Chr20: 3791210 .. 3794144 (+)
RNA-Seq Expression	Csor.00g229760
Synteny	Csor.00g229760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTGGTGTCTACTTCTCTCGCATCTCAGCTCTCAGCTATCAGATTGTCCACTTCCAAGTCCGACATTTCTCAGACTCTGTTTCAGAACGTCCACTCACAAATCCGCCTTGCATCCTCCCGGAAAGGTCCCCGTGGTGTTGTCACCATGGCCGGTTCCGGCAAGGTATTTCTCCGTTTTTTGTTAGTTTGTTATTGATTTGCGCTGGAATCGTTTCCGCTACTTGAAGAACTTTTTGATTAGTGTGTCGATCATCATTCTTAACCTAGCGGCTAGCGTCTTGTGTTCGTAACTGTGTCTTAACAGTAGGGAAAGAGAATGCGTCGGATGTGGAATAAGGAGTTTCTTTGCCTATTTTTCTTGTTCGTAGCCGTTGGTCAATTTGGAATAGGCGATGACTCCTAAGTACAAATCTGTTTAAGCTATCAATTTTTCCAGCTTTTTTGTAGATCATACTTGTGAATTGTGATTAGGATTCGTTCAAGATTTAATTGTTACTCGCAACTTTTCGGTTCCATATTTCATGTCTCCCAAGCCCTCCCGCAATTTTTAGTACTGTGGATTATACTTATTGCCACAGCTTTAATGATTCTTTTTCTTCAAATTGTTATTTACCCAATCCTTGAATTAACAAGGCCATGGTTTTTACGGGTTTTATTAATTTATTAATACTAGTTTAGAAAAATCGGTATTCAATATTCTCTCATTTCCATATTTTCTAAGTTCTGATTATTATCACCCTTTGTTGTATTTGCAGTTCTTCGTTGGTGGAAACTGGAAATGTGTAAGTATCTTCATTATCAATAATCTTATAGCTAAAGGATGTGATGGATAGACGATAGTTATATATGTCGAGGAAAAAAGTTCGAACGTTTGTTGCAAATGGATGCTTTGATTTCTCTTCGAATCATTCTACGTTTCTGTTCTATCCATAATCTCACTAATGTGAAACACAAGTCGTCTTATCACGATCTTTCTAGAACTTACTTTTCTGTTGCAACTTGTGCCAAACATAGAAGAGAATGTAATTGATTTTCATTTATTTTTCTAGTACCATCGTTAATGTCTACTATTAATTGTTACTGAAGCATGTGCAAATCATTTGAAATGGAAGAAGCCTAGAAAAAATATACCATATTCTTGTTTGTCTTTATAACTTCATTTTCATAGGCAAAAAGGGTTTAAGTTCAAACCTGGAGAGCACACAAAGGTTCCGCTGCCACTTCTATATAAGATACCACTTTTAAATTATTTTGATTGTAGTTTTAGAAGCTTAGGAGATCAGGAATCCTTTGTTGTTTACGATTTTTAAGCTCTTAGAAGTGTACTGGACACATTGTAGTACCCAAAATGAAGACACTTATCTGCCTGCTGGTATGGCTTGACTGTCGTCCAAGATGATTGAGCTACTAATATTTCCCATCCTCCTTACTTAGTAAATAAAGAAATTAATTATTTTGAATTTGTGACTGACATATATGGATTCTTACCCTGTTTAATTTATTCCCAGAATGGTACAAAGGAATCAATAACCAAGCTTGTCTCAGATTTGAACAATGTAAAGTTGGAGGATGATGTTGGTAAGTTACGTTTGATGTTGGAGGATGCCTGTTATCACCTTTTAATGTATGTGTTCTTTCATTTAAAAAACAAAAGTTAGGTTTGAGAATACGTTTCCCCCCTCTTGTATTCACTTTGCAAATCAATGTATGAAATTCTTGCTAAAAGAAATCAAAGGTTGCATTTCATATGGGCTTGTTTCTGATTTTATTACATGAAGTGTTTTCCACCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATTATTATTATTACTTATTCTAAGATCTCTTTCAATTTTATAGTAGGTTGGTATCAAATTATTAATACACCTGAGTTATCGATGAGGATGAATGACATTTTTGTTCTAAATTCTGATAGTCTTTCTCTCCATATTGAAAGCTGGGTTTTCTCCATAATTCTTGTTCTCTTCGCATTCTTATTCTACTCTTCAAGTACATTCTTCTGAAAAAAAGAAATTTGGATATGTTGGGAGGAATGCAGATGTTGTTGTAGCACCTCCATTTCTGTACATTGATCAGGTGAGGAGCTCATTGGCACCTAGGATTGAGATTTCTGCCCAAAACTCATGGGTGAGCAAGGGTGGCGCTTTTACAGGAGAAATCAGGTTATCTGCAATGCCCTTGATGAGACATTTTAGTTTTCGAGAACCCTTCATTCCTTATTTCACTTTCACGATAATCTTATAATCACTTATCTGAGAAGAGAAAACTGCGGAACTCTCTGTAACTTTAGTAATTCCCGTTGACTGCAGATGCTGTTCCAAGTTGGGATGGTATCGTTATCGCATATGAGCCAGTATGGGCCATTGGGACTGGCAAAGTGGCTACTCCCGACCAAGCACAGGAAGTGCATGCAGCAGTTCGCGATTGGCTTAAGAAGAACGTATCACCAGAAGTGGCTTCTAAAACACGGATTATTTATGGAGGTAACTGCCACTTTCATTGTTCTACTGTCAACTTTCAGCCGCTGTAGAAATAAGTTTGCTTGCCTGAACCTTTATCAACAAGTCCATGTTTCGTAAGACTGCCACTGTGAATAACAATCAGACTGGGTCACGTGTCTAAGGAATGATATTATTATTGTTAGGATCTGTGAATGGAGGTAATTGTGCTGAGCTTGCTAAAAAAGAGGACATAGATGGATTTCTAGTGGGAGGCGCTTCGTTGAAGGTGCATTTCTTCCTCTCCCCTTATGTTTTTCTAACGTTTCTGTCAAACCATAGAAGAAAAAGTTTGGCGAACCATACTCAAAGTCCCATCTCAAATCTGTTTCATGTTGCAATTGCAGGGTCCTGAATTTGGAACAATCGTTAATTCCGTTACCGCCAAGAAAGTCGCTGCTTGA

mRNA sequence

ATGGCGGTGGTGTCTACTTCTCTCGCATCTCAGCTCTCAGCTATCAGATTGTCCACTTCCAAGTCCGACATTTCTCAGACTCTGTTTCAGAACGTCCACTCACAAATCCGCCTTGCATCCTCCCGGAAAGGTCCCCGTGGTGTTGTCACCATGGCCGGTTCCGGCAAGTTCTTCGTTGGTGGAAACTGGAAATGTAATGGTACAAAGGAATCAATAACCAAGCTTGTCTCAGATTTGAACAATGTAAAGTTGGAGGATGATGTTGATGTTGTTGTAGCACCTCCATTTCTGTACATTGATCAGGTGAGGAGCTCATTGGCACCTAGGATTGAGATTTCTGCCCAAAACTCATGGGTGAGCAAGGATGCTGTTCCAAGTTGGGATGGTATCGTTATCGCATATGAGCCAGTATGGGCCATTGGGACTGGCAAAGTGGCTACTCCCGACCAAGCACAGGAAGTGCATGCAGCAGTTCGCGATTGGCTTAAGAAGAACGTATCACCAGAAGTGGCTTCTAAAACACGGATTATTTATGGAGGATCTGTGAATGGAGGTAATTGTGCTGAGCTTGCTAAAAAAGAGGACATAGATGGATTTCTAGTGGGAGGCGCTTCGTTGAAGGGTCCTGAATTTGGAACAATCGTTAATTCCGTTACCGCCAAGAAAGTCGCTGCTTGA

Coding sequence (CDS)

ATGGCGGTGGTGTCTACTTCTCTCGCATCTCAGCTCTCAGCTATCAGATTGTCCACTTCCAAGTCCGACATTTCTCAGACTCTGTTTCAGAACGTCCACTCACAAATCCGCCTTGCATCCTCCCGGAAAGGTCCCCGTGGTGTTGTCACCATGGCCGGTTCCGGCAAGTTCTTCGTTGGTGGAAACTGGAAATGTAATGGTACAAAGGAATCAATAACCAAGCTTGTCTCAGATTTGAACAATGTAAAGTTGGAGGATGATGTTGATGTTGTTGTAGCACCTCCATTTCTGTACATTGATCAGGTGAGGAGCTCATTGGCACCTAGGATTGAGATTTCTGCCCAAAACTCATGGGTGAGCAAGGATGCTGTTCCAAGTTGGGATGGTATCGTTATCGCATATGAGCCAGTATGGGCCATTGGGACTGGCAAAGTGGCTACTCCCGACCAAGCACAGGAAGTGCATGCAGCAGTTCGCGATTGGCTTAAGAAGAACGTATCACCAGAAGTGGCTTCTAAAACACGGATTATTTATGGAGGATCTGTGAATGGAGGTAATTGTGCTGAGCTTGCTAAAAAAGAGGACATAGATGGATTTCTAGTGGGAGGCGCTTCGTTGAAGGGTCCTGAATTTGGAACAATCGTTAATTCCGTTACCGCCAAGAAAGTCGCTGCTTGA

Protein sequence

MAVVSTSLASQLSAIRLSTSKSDISQTLFQNVHSQIRLASSRKGPRGVVTMAGSGKFFVGGNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVRSSLAPRIEISAQNSWVSKDAVPSWDGIVIAYEPVWAIGTGKVATPDQAQEVHAAVRDWLKKNVSPEVASKTRIIYGGSVNGGNCAELAKKEDIDGFLVGGASLKGPEFGTIVNSVTAKKVAA

Homology

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BLAST of Csor.00g229760 vs. ExPASy Swiss-Prot
Match: P48496 (Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea OX=3562 GN=TPIP1 PE=1 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 4.2e-84
Identity = 185/322 (57.45%), Postives = 202/322 (62.73%), Query Frame = 0


Query: 1   MAVVSTSLASQL-----------SAIRLSTSKSDIS----QTLFQNVHSQIRL-ASSRKG 60
           MAVVSTSLASQ+           S +R S  K + S     + FQNV S +RL +SSR+ 
Sbjct: 1   MAVVSTSLASQITNPNSAVSTQFSGLRRSFLKLENSVSTQSSFFQNVDSHLRLSSSSRRC 60

Query: 61  PRGVVTMAGSGKFFVGGNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVRS 120
           PRGVV MAGSGKFFVGGNWKCNGTKESITKLVSDLN+  LE DVDVVVAPPF+YIDQV+S
Sbjct: 61  PRGVVAMAGSGKFFVGGNWKCNGTKESITKLVSDLNSATLEADVDVVVAPPFVYIDQVKS 120

Query: 121 SLAPRIEISAQNSWVSK------------------------------------------- 180
           SL  R+EISAQN W+ K                                           
Sbjct: 121 SLTGRVEISAQNCWIGKGGAFTGEISVEQLKDLGCQWVILGHSERRHVIGEQNEFIGKKA 180

Query: 181 --------------------------------------DAVPSWDGIVIAYEPVWAIGTG 226
                                                 DA+PSWD +V+AYEPVWAIGTG
Sbjct: 181 AYALNQGVGVIACIGELLEEREAGKTFDVCYQQLKAFADALPSWDNVVVAYEPVWAIGTG 240

[Close]

BLAST of Csor.00g229760 vs. ExPASy Swiss-Prot
Match: Q9M4S8 (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa OX=3747 GN=TPI PE=2 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 5.9e-78
Identity = 176/317 (55.52%), Postives = 195/317 (61.51%), Query Frame = 0


Query: 1   MAVVSTSLASQL----------SAIRLSTSKSDIS-QTLFQNVHSQIRLASSRKGPRGVV 60
           MAV STSLASQL          S +R S  K D S  +LFQ++      +SSRK  R VV
Sbjct: 1   MAVASTSLASQLSGPKSLSQPYSGLRRSCPKLDQSHSSLFQHLSLS---SSSRKASRAVV 60

Query: 61  TMAGSGKFFVGGNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVRSSLAPR 120
            MAG+GKFFVGGNWKCNGTK+ I+KLVSDLN+ KLE DVDVVVAPPFLY+DQV+SSL  R
Sbjct: 61  AMAGTGKFFVGGNWKCNGTKDLISKLVSDLNSAKLEPDVDVVVAPPFLYLDQVKSSLTDR 120

Query: 121 IEISAQNSWVSK------------------------------------------------ 180
           IEIS QNSWV+K                                                
Sbjct: 121 IEISGQNSWVAKGGAFTGEISVEQLKDIGRKWVILGHSERRHVIGEDDQFIGKKAAYALN 180

Query: 181 ---------------------------------DAVPSWDGIVIAYEPVWAIGTGKVATP 226
                                            DAVPSW+ IV+AYEPVWAIGTGKVA+P
Sbjct: 181 EGLGVIACIGEKLEEREAGKTFDVCYEQLKAFADAVPSWENIVVAYEPVWAIGTGKVASP 240

[Close]

BLAST of Csor.00g229760 vs. ExPASy Swiss-Prot
Match: Q9SKP6 (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIM PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 6.5e-77
Identity = 169/315 (53.65%), Postives = 188/315 (59.68%), Query Frame = 0


Query: 1   MAVVSTSLASQLSAIRLSTSKSDIS-----QTLFQNVHSQIRL----ASSRKGPRGVVTM 60
           MA  S +     S +R  + K D +     Q+ F  V+S  RL    +SS + PRGVV M
Sbjct: 1   MAATSLTAPPSFSGLRRISPKLDAAAVSSHQSFFHRVNSSTRLVSSSSSSHRSPRGVVAM 60

Query: 61  AGSGKFFVGGNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVRSSLAPRIE 120
           AGSGKFFVGGNWKCNGTK+SI KL+SDLN+  LE DVDVVV+PPF+YIDQV+SSL  RI+
Sbjct: 61  AGSGKFFVGGNWKCNGTKDSIAKLISDLNSATLEADVDVVVSPPFVYIDQVKSSLTDRID 120

Query: 121 ISAQNSWVSK-------------------------------------------------- 180
           IS QNSWV K                                                  
Sbjct: 121 ISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEG 180

Query: 181 -------------------------------DAVPSWDGIVIAYEPVWAIGTGKVATPDQ 226
                                          DAVPSWD IV+AYEPVWAIGTGKVA+P Q
Sbjct: 181 LGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQ 240

[Close]

BLAST of Csor.00g229760 vs. ExPASy Swiss-Prot
Match: P46225 (Triosephosphate isomerase, chloroplastic OS=Secale cereale OX=4550 PE=1 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 5.5e-68
Identity = 142/259 (54.83%), Postives = 156/259 (60.23%), Query Frame = 0


Query: 48  VVTMAGSGKFFVGGNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVRSSLA 107
           +V MAGSGKFFVGGNWKCNGTKESI+KLVSDLN   LE DVDVVVAPPF+YIDQV+SSL 
Sbjct: 40  LVAMAGSGKFFVGGNWKCNGTKESISKLVSDLNAATLESDVDVVVAPPFIYIDQVKSSLT 99

Query: 108 PRIEISAQNSWVSK---------------------------------------------- 167
            RIE+SAQN+W+ K                                              
Sbjct: 100 DRIEVSAQNTWIGKGGAFTGEISAEQLVDIGCQWVILGHSERRHVIGEDDEFIGKKAAYA 159

Query: 168 -----------------------------------DAVPSWDGIVIAYEPVWAIGTGKVA 226
                                              D +  W  +VIAYEPVWAIGTGKVA
Sbjct: 160 LSQNLKVMACIGELLEEREAGKTFDVCFKQMKAFADNITDWTNVVIAYEPVWAIGTGKVA 219

[Close]

BLAST of Csor.00g229760 vs. ExPASy Swiss-Prot
Match: P48497 (Triosephosphate isomerase, cytosolic OS=Stellaria longipes OX=19744 GN=TPI PE=2 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 5.0e-53
Identity = 117/254 (46.06%), Postives = 138/254 (54.33%), Query Frame = 0


Query: 56  KFFVGGNWKCNGTKESITKLVSDLN--NVKLEDDVDVVVAPPFLYIDQVRSSLAPRIEIS 115
           KFFVGGNWKCNGT+ES++K+V  LN   +   D V VVV+PP++++    + L   I+++
Sbjct: 4   KFFVGGNWKCNGTQESVSKIVDTLNEPTIAANDVVTVVVSPPYVFLPDENAELKHEIQVA 63

Query: 116 AQNSWVSKDA-------------------------------------------------- 175
           AQN WV K                                                    
Sbjct: 64  AQNCWVKKGGAFTGEVSAQMLANLGITWVILGHSERRTLLGESNEFVGKKAAYAQSEGLG 123

Query: 176 --------------------------------VPSWDGIVIAYEPVWAIGTGKVATPDQA 226
                                              WD +V+AYEPVWAIGTGKVA+P+QA
Sbjct: 124 VIACIGELLEEREAGKTFDVCFKQLKSFARFPAKPWDNVVVAYEPVWAIGTGKVASPEQA 183

[Close]

BLAST of Csor.00g229760 vs. NCBI nr
Match: KAG6571040.1 (Triosephosphate isomerase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 433 bits (1114), Expect = 6.78e-153
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MAVVSTSLASQLSAIRLSTSKSDISQTLFQNVHSQIRLASSRKGPRGVVTMAGSGKFFVG 60
           MAVVSTSLASQLSAIRLSTSKSDISQTLFQNVHSQIRLASSRKGPRGVVTMAGSGKFFVG
Sbjct: 1   MAVVSTSLASQLSAIRLSTSKSDISQTLFQNVHSQIRLASSRKGPRGVVTMAGSGKFFVG 60

Query: 61  GNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVRSSLAPRIEISAQNSWVS 120
           GNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVRSSLAPRIEISAQNSWVS
Sbjct: 61  GNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVRSSLAPRIEISAQNSWVS 120

Query: 121 KDAVPSWDGIVIAYEPVWAIGTGKVATPDQAQEVHAAVRDWLKKNVSPEVASKTRIIYGG 180
           KDAVPSWDGIVIAYEPVWAIGTGKVATPDQAQEVHAAVRDWLKKNVSPEVASKTRIIYGG
Sbjct: 121 KDAVPSWDGIVIAYEPVWAIGTGKVATPDQAQEVHAAVRDWLKKNVSPEVASKTRIIYGG 180

Query: 181 SVNGGNCAELAKKEDIDGFLVGGASLKGPEFGTIVNSVTAKKVAA 225
           SVNGGNCAELAKKEDIDGFLVGGASLKGPEFGTIVNSVTAKKVAA
Sbjct: 181 SVNGGNCAELAKKEDIDGFLVGGASLKGPEFGTIVNSVTAKKVAA 225

[Close]

BLAST of Csor.00g229760 vs. NCBI nr
Match: XP_023512787.1 (triosephosphate isomerase, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 397 bits (1019), Expect = 3.63e-137
Identity = 224/306 (73.20%), Postives = 225/306 (73.53%), Query Frame = 0


Query: 1   MAVVSTSLASQLSAIRLSTSKSDISQTLFQNVHSQIRLASSRKGPRGVVTMAGSGKFFVG 60
           MAVVSTSLASQLSAIRLSTSKSDISQTLFQNVHSQIRLASSRKGPRGVVTMAGSGKFFVG
Sbjct: 1   MAVVSTSLASQLSAIRLSTSKSDISQTLFQNVHSQIRLASSRKGPRGVVTMAGSGKFFVG 60

Query: 61  GNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVRSSLAPRIEISAQNSWVS 120
           GNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQV+SSLAPRIEISAQNSWVS
Sbjct: 61  GNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVKSSLAPRIEISAQNSWVS 120

Query: 121 K----------------------------------------------------------- 180
           K                                                           
Sbjct: 121 KGGAFTGEISVEQLKDIGCKWVILGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 180

Query: 181 ----------------------DAVPSWDGIVIAYEPVWAIGTGKVATPDQAQEVHAAVR 225
                                 DAVPSWDGIVIAYEPVWAIGTGKVATPDQAQEVHAAVR
Sbjct: 181 LLEEREAGKTFDVCFQQLKAYADAVPSWDGIVIAYEPVWAIGTGKVATPDQAQEVHAAVR 240

[Close]

BLAST of Csor.00g229760 vs. NCBI nr
Match: XP_022987010.1 (triosephosphate isomerase, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 394 bits (1011), Expect = 6.00e-136
Identity = 223/306 (72.88%), Postives = 224/306 (73.20%), Query Frame = 0


Query: 1   MAVVSTSLASQLSAIRLSTSKSDISQTLFQNVHSQIRLASSRKGPRGVVTMAGSGKFFVG 60
           MAVVSTSLASQLSAIRLSTSKSDISQTLFQNVHSQIRLASSRKG RGVVTMAGSGKFFVG
Sbjct: 1   MAVVSTSLASQLSAIRLSTSKSDISQTLFQNVHSQIRLASSRKGSRGVVTMAGSGKFFVG 60

Query: 61  GNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVRSSLAPRIEISAQNSWVS 120
           GNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQV+SSLAPRIEISAQNSWVS
Sbjct: 61  GNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVKSSLAPRIEISAQNSWVS 120

Query: 121 K----------------------------------------------------------- 180
           K                                                           
Sbjct: 121 KGGAFTGEISVEQLKDIGCKWVILGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 180

Query: 181 ----------------------DAVPSWDGIVIAYEPVWAIGTGKVATPDQAQEVHAAVR 225
                                 DAVPSWDGIVIAYEPVWAIGTGKVATPDQAQEVHAAVR
Sbjct: 181 LLEEREAGKTFDVCFQQLKAYADAVPSWDGIVIAYEPVWAIGTGKVATPDQAQEVHAAVR 240

[Close]

BLAST of Csor.00g229760 vs. NCBI nr
Match: XP_022944549.1 (triosephosphate isomerase, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 393 bits (1010), Expect = 8.51e-136
Identity = 223/306 (72.88%), Postives = 224/306 (73.20%), Query Frame = 0


Query: 1   MAVVSTSLASQLSAIRLSTSKSDISQTLFQNVHSQIRLASSRKGPRGVVTMAGSGKFFVG 60
           MAVVSTSLASQLSAIRLSTSKSDISQTLFQNVHSQIRLASSRKGPRGVVTMAGSGKFFVG
Sbjct: 1   MAVVSTSLASQLSAIRLSTSKSDISQTLFQNVHSQIRLASSRKGPRGVVTMAGSGKFFVG 60

Query: 61  GNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVRSSLAPRIEISAQNSWVS 120
           GNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVRSSLAPRIEISAQNSWVS
Sbjct: 61  GNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVRSSLAPRIEISAQNSWVS 120

Query: 121 K----------------------------------------------------------- 180
           K                                                           
Sbjct: 121 KGGAFTGEISVEQLKDIGCKWVILGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 180

Query: 181 ----------------------DAVPSWDGIVIAYEPVWAIGTGKVATPDQAQEVHAAVR 225
                                 DAV SWDGIVIAYEPVWAIGTGKVATP+QAQEVHAAVR
Sbjct: 181 LLEEREAGKTFDVCFQQLKAYADAVSSWDGIVIAYEPVWAIGTGKVATPEQAQEVHAAVR 240

[Close]

BLAST of Csor.00g229760 vs. NCBI nr
Match: XP_022146193.1 (triosephosphate isomerase, chloroplastic [Momordica charantia])

HSP 1 Score: 374 bits (959), Expect = 4.91e-128
Identity = 209/306 (68.30%), Postives = 217/306 (70.92%), Query Frame = 0


Query: 1   MAVVSTSLASQLSAIRLSTSKSDISQTLFQNVHSQIRLASSRKGPRGVVTMAGSGKFFVG 60
           MAVVSTSLASQLSA+RLS+SKSDISQTLFQNVHSQIRLASSRKG RGV TMAGSGKFFVG
Sbjct: 1   MAVVSTSLASQLSAVRLSSSKSDISQTLFQNVHSQIRLASSRKGSRGVFTMAGSGKFFVG 60

Query: 61  GNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVRSSLAPRIEISAQNSWVS 120
           GNWKCNGTKESI KLVSDLNN KLEDDVDVVVAPPF+YIDQV+SSLA RIEISAQNSWVS
Sbjct: 61  GNWKCNGTKESIAKLVSDLNNAKLEDDVDVVVAPPFVYIDQVKSSLASRIEISAQNSWVS 120

Query: 121 K----------------------------------------------------------- 180
           K                                                           
Sbjct: 121 KGGAFTGEISVEQLKDIGCKWVILGHSERRHIIGEDDQFIGKKAAYALSEGLGVIACIGE 180

Query: 181 ----------------------DAVPSWDGIVIAYEPVWAIGTGKVATPDQAQEVHAAVR 225
                                 DA+PSWDG+VIAYEPVWAIGTGKVATP+QAQEVHAAVR
Sbjct: 181 LLEEREAGKTFDVCFQQLKAFADAIPSWDGVVIAYEPVWAIGTGKVATPEQAQEVHAAVR 240

[Close]

BLAST of Csor.00g229760 vs. ExPASy TrEMBL
Match: A0A6J1JFM2 (triosephosphate isomerase, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111484585 PE=3 SV=1)

HSP 1 Score: 394 bits (1011), Expect = 2.90e-136
Identity = 223/306 (72.88%), Postives = 224/306 (73.20%), Query Frame = 0


Query: 1   MAVVSTSLASQLSAIRLSTSKSDISQTLFQNVHSQIRLASSRKGPRGVVTMAGSGKFFVG 60
           MAVVSTSLASQLSAIRLSTSKSDISQTLFQNVHSQIRLASSRKG RGVVTMAGSGKFFVG
Sbjct: 1   MAVVSTSLASQLSAIRLSTSKSDISQTLFQNVHSQIRLASSRKGSRGVVTMAGSGKFFVG 60

Query: 61  GNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVRSSLAPRIEISAQNSWVS 120
           GNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQV+SSLAPRIEISAQNSWVS
Sbjct: 61  GNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVKSSLAPRIEISAQNSWVS 120

Query: 121 K----------------------------------------------------------- 180
           K                                                           
Sbjct: 121 KGGAFTGEISVEQLKDIGCKWVILGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 180

Query: 181 ----------------------DAVPSWDGIVIAYEPVWAIGTGKVATPDQAQEVHAAVR 225
                                 DAVPSWDGIVIAYEPVWAIGTGKVATPDQAQEVHAAVR
Sbjct: 181 LLEEREAGKTFDVCFQQLKAYADAVPSWDGIVIAYEPVWAIGTGKVATPDQAQEVHAAVR 240

[Close]

BLAST of Csor.00g229760 vs. ExPASy TrEMBL
Match: A0A6J1FWW5 (triosephosphate isomerase, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111448968 PE=3 SV=1)

HSP 1 Score: 393 bits (1010), Expect = 4.12e-136
Identity = 223/306 (72.88%), Postives = 224/306 (73.20%), Query Frame = 0


Query: 1   MAVVSTSLASQLSAIRLSTSKSDISQTLFQNVHSQIRLASSRKGPRGVVTMAGSGKFFVG 60
           MAVVSTSLASQLSAIRLSTSKSDISQTLFQNVHSQIRLASSRKGPRGVVTMAGSGKFFVG
Sbjct: 1   MAVVSTSLASQLSAIRLSTSKSDISQTLFQNVHSQIRLASSRKGPRGVVTMAGSGKFFVG 60

Query: 61  GNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVRSSLAPRIEISAQNSWVS 120
           GNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVRSSLAPRIEISAQNSWVS
Sbjct: 61  GNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVRSSLAPRIEISAQNSWVS 120

Query: 121 K----------------------------------------------------------- 180
           K                                                           
Sbjct: 121 KGGAFTGEISVEQLKDIGCKWVILGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 180

Query: 181 ----------------------DAVPSWDGIVIAYEPVWAIGTGKVATPDQAQEVHAAVR 225
                                 DAV SWDGIVIAYEPVWAIGTGKVATP+QAQEVHAAVR
Sbjct: 181 LLEEREAGKTFDVCFQQLKAYADAVSSWDGIVIAYEPVWAIGTGKVATPEQAQEVHAAVR 240

[Close]

BLAST of Csor.00g229760 vs. ExPASy TrEMBL
Match: A0A6J1CXY1 (triosephosphate isomerase, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015469 PE=3 SV=1)

HSP 1 Score: 374 bits (959), Expect = 2.38e-128
Identity = 209/306 (68.30%), Postives = 217/306 (70.92%), Query Frame = 0


Query: 1   MAVVSTSLASQLSAIRLSTSKSDISQTLFQNVHSQIRLASSRKGPRGVVTMAGSGKFFVG 60
           MAVVSTSLASQLSA+RLS+SKSDISQTLFQNVHSQIRLASSRKG RGV TMAGSGKFFVG
Sbjct: 1   MAVVSTSLASQLSAVRLSSSKSDISQTLFQNVHSQIRLASSRKGSRGVFTMAGSGKFFVG 60

Query: 61  GNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVRSSLAPRIEISAQNSWVS 120
           GNWKCNGTKESI KLVSDLNN KLEDDVDVVVAPPF+YIDQV+SSLA RIEISAQNSWVS
Sbjct: 61  GNWKCNGTKESIAKLVSDLNNAKLEDDVDVVVAPPFVYIDQVKSSLASRIEISAQNSWVS 120

Query: 121 K----------------------------------------------------------- 180
           K                                                           
Sbjct: 121 KGGAFTGEISVEQLKDIGCKWVILGHSERRHIIGEDDQFIGKKAAYALSEGLGVIACIGE 180

Query: 181 ----------------------DAVPSWDGIVIAYEPVWAIGTGKVATPDQAQEVHAAVR 225
                                 DA+PSWDG+VIAYEPVWAIGTGKVATP+QAQEVHAAVR
Sbjct: 181 LLEEREAGKTFDVCFQQLKAFADAIPSWDGVVIAYEPVWAIGTGKVATPEQAQEVHAAVR 240

[Close]

BLAST of Csor.00g229760 vs. ExPASy TrEMBL
Match: A0A6J1G6X6 (triosephosphate isomerase, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111451334 PE=3 SV=1)

HSP 1 Score: 369 bits (948), Expect = 1.12e-126
Identity = 210/306 (68.63%), Postives = 217/306 (70.92%), Query Frame = 0


Query: 1   MAVVSTSLASQLSAIRLSTSKSDISQTLFQNVHSQIRLASSRKGPRGVVTMAGSGKFFVG 60
           MAVVSTSLASQLSA+RLS S SDISQTL QNV SQIRLASSRKG RGVVTMAGSGKFFVG
Sbjct: 1   MAVVSTSLASQLSAVRLSGSNSDISQTLLQNVRSQIRLASSRKGSRGVVTMAGSGKFFVG 60

Query: 61  GNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVRSSLAPRIEISAQNSWVS 120
           GNWKCNGTKESI+KLV+DLNN KLEDDVDVVVAPPF+YIDQV+SSLA RIEISAQNSWVS
Sbjct: 61  GNWKCNGTKESISKLVADLNNAKLEDDVDVVVAPPFVYIDQVKSSLASRIEISAQNSWVS 120

Query: 121 K----------------------------------------------------------- 180
           K                                                           
Sbjct: 121 KGGAFTGEISVEQLKDLGCKWVILGHSERRHIIGEDDQFIGKKAAYALSEGLGVMACIGE 180

Query: 181 ----------------------DAVPSWDGIVIAYEPVWAIGTGKVATPDQAQEVHAAVR 225
                                 DAVPSWDGIVIAYEPVWAIGTGKVA+P+QAQEVHAAVR
Sbjct: 181 LLEEREAGKTFDVCFRQLKAFADAVPSWDGIVIAYEPVWAIGTGKVASPEQAQEVHAAVR 240

[Close]

BLAST of Csor.00g229760 vs. ExPASy TrEMBL
Match: A0A6J1L7Y2 (triosephosphate isomerase, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111500005 PE=3 SV=1)

HSP 1 Score: 368 bits (944), Expect = 4.55e-126
Identity = 209/306 (68.30%), Postives = 216/306 (70.59%), Query Frame = 0


Query: 1   MAVVSTSLASQLSAIRLSTSKSDISQTLFQNVHSQIRLASSRKGPRGVVTMAGSGKFFVG 60
           MAVVSTSLASQLSA+RLS S SDISQTL QNV SQIRLASSRKG RGVVTMAGSGKFFVG
Sbjct: 1   MAVVSTSLASQLSAVRLSGSNSDISQTLLQNVRSQIRLASSRKGSRGVVTMAGSGKFFVG 60

Query: 61  GNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVRSSLAPRIEISAQNSWVS 120
           GNWKCNGTKESITKLV+DLNN KLEDDVD+VVAPPF+YIDQV+SSLA RIEISAQNSWVS
Sbjct: 61  GNWKCNGTKESITKLVADLNNAKLEDDVDIVVAPPFVYIDQVKSSLASRIEISAQNSWVS 120

Query: 121 K----------------------------------------------------------- 180
           K                                                           
Sbjct: 121 KGGAFTGEISVEQLKDLGCKWVILGHSERRHIIGEDDQFIGKKASYALSEGLGVIACIGE 180

Query: 181 ----------------------DAVPSWDGIVIAYEPVWAIGTGKVATPDQAQEVHAAVR 225
                                 DAVPSWD IVIAYEPVWAIGTGKVA+P+QAQEVHAAVR
Sbjct: 181 LLEEREAGKTFDVCFRQLKAFADAVPSWDDIVIAYEPVWAIGTGKVASPEQAQEVHAAVR 240

[Close]

BLAST of Csor.00g229760 vs. TAIR 10
Match: AT2G21170.1 (triosephosphate isomerase )

HSP 1 Score: 288.5 bits (737), Expect = 4.6e-78
Identity = 169/315 (53.65%), Postives = 188/315 (59.68%), Query Frame = 0


Query: 1   MAVVSTSLASQLSAIRLSTSKSDIS-----QTLFQNVHSQIRL----ASSRKGPRGVVTM 60
           MA  S +     S +R  + K D +     Q+ F  V+S  RL    +SS + PRGVV M
Sbjct: 1   MAATSLTAPPSFSGLRRISPKLDAAAVSSHQSFFHRVNSSTRLVSSSSSSHRSPRGVVAM 60

Query: 61  AGSGKFFVGGNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVRSSLAPRIE 120
           AGSGKFFVGGNWKCNGTK+SI KL+SDLN+  LE DVDVVV+PPF+YIDQV+SSL  RI+
Sbjct: 61  AGSGKFFVGGNWKCNGTKDSIAKLISDLNSATLEADVDVVVSPPFVYIDQVKSSLTDRID 120

Query: 121 ISAQNSWVSK-------------------------------------------------- 180
           IS QNSWV K                                                  
Sbjct: 121 ISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEG 180

Query: 181 -------------------------------DAVPSWDGIVIAYEPVWAIGTGKVATPDQ 226
                                          DAVPSWD IV+AYEPVWAIGTGKVA+P Q
Sbjct: 181 LGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQ 240

[Close]

BLAST of Csor.00g229760 vs. TAIR 10
Match: AT2G21170.2 (triosephosphate isomerase )

HSP 1 Score: 258.1 bits (658), Expect = 6.7e-69
Identity = 160/315 (50.79%), Postives = 179/315 (56.83%), Query Frame = 0


Query: 1   MAVVSTSLASQLSAIRLSTSKSDIS-----QTLFQNVHSQIRL----ASSRKGPRGVVTM 60
           MA  S +     S +R  + K D +     Q+ F  V+S  RL    +SS + PRGVV M
Sbjct: 1   MAATSLTAPPSFSGLRRISPKLDAAAVSSHQSFFHRVNSSTRLVSSSSSSHRSPRGVVAM 60

Query: 61  AGSGKFFVGGNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVRSSLAPRIE 120
           AGSGK         NGTK+SI KL+SDLN+  LE DVDVVV+PPF+YIDQV+SSL  RI+
Sbjct: 61  AGSGK---------NGTKDSIAKLISDLNSATLEADVDVVVSPPFVYIDQVKSSLTDRID 120

Query: 121 ISAQNSWVSK-------------------------------------------------- 180
           IS QNSWV K                                                  
Sbjct: 121 ISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEG 180

Query: 181 -------------------------------DAVPSWDGIVIAYEPVWAIGTGKVATPDQ 226
                                          DAVPSWD IV+AYEPVWAIGTGKVA+P Q
Sbjct: 181 LGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQ 240

[Close]

BLAST of Csor.00g229760 vs. TAIR 10
Match: AT3G55440.1 (triosephosphate isomerase )

HSP 1 Score: 177.6 bits (449), Expect = 1.2e-44
Identity = 104/252 (41.27%), Postives = 130/252 (51.59%), Query Frame = 0


Query: 56  KFFVGGNWKCNGTKESITKLVSDLNNVKL--EDDVDVVVAPPFLYIDQVRSSLAPRIEIS 115
           KFFVGGNWKCNGT E + K+V+ LN  ++  +D V+VVV+PP++++  V+S+L     ++
Sbjct: 4   KFFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDFFVA 63

Query: 116 AQNSWVSK---------------------------------------------------- 175
           AQN WV K                                                    
Sbjct: 64  AQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQGLK 123

Query: 176 -----------------------------DAVPSWDGIVIAYEPVWAIGTGKVATPDQAQ 225
                                        D V +W  +VIAYEPVWAIGTGKVA+P QAQ
Sbjct: 124 VIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQ 183

The following BLAST results are available for this feature:

BLAST of Csor.00g229760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P48496	4.2e-84	57.45	Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea OX=3562 GN=TPIP1 P...	[more]
Q9M4S8	5.9e-78	55.52	Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa OX=3747 GN=TPI PE=...	[more]
Q9SKP6	6.5e-77	53.65	Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIM ...	[more]
P46225	5.5e-68	54.83	Triosephosphate isomerase, chloroplastic OS=Secale cereale OX=4550 PE=1 SV=1	[more]
P48497	5.0e-53	46.06	Triosephosphate isomerase, cytosolic OS=Stellaria longipes OX=19744 GN=TPI PE=2 ...	[more]

BLAST of Csor.00g229760 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571040.1	6.78e-153	100.00	Triosephosphate isomerase, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_023512787.1	3.63e-137	73.20	triosephosphate isomerase, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022987010.1	6.00e-136	72.88	triosephosphate isomerase, chloroplastic-like [Cucurbita maxima]	[more]
XP_022944549.1	8.51e-136	72.88	triosephosphate isomerase, chloroplastic-like [Cucurbita moschata]	[more]
XP_022146193.1	4.91e-128	68.30	triosephosphate isomerase, chloroplastic [Momordica charantia]	[more]

BLAST of Csor.00g229760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JFM2	2.90e-136	72.88	triosephosphate isomerase, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1FWW5	4.12e-136	72.88	triosephosphate isomerase, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1CXY1	2.38e-128	68.30	triosephosphate isomerase, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1G6X6	1.12e-126	68.63	triosephosphate isomerase, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1L7Y2	4.55e-126	68.30	triosephosphate isomerase, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of Csor.00g229760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21170.1	4.6e-78	53.65	triosephosphate isomerase	[more]
AT2G21170.2	6.7e-69	50.79	triosephosphate isomerase	[more]
AT3G55440.1	1.2e-44	41.27	triosephosphate isomerase	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000652	Triosephosphate isomerase	PFAM	PF00121	TIM	coord: 126..215 e-value: 5.3E-37 score: 127.5 coord: 58..120 e-value: 3.1E-10 score: 39.8
IPR000652	Triosephosphate isomerase	PANTHER	PTHR21139	TRIOSEPHOSPHATE ISOMERASE	coord: 4..121
IPR000652	Triosephosphate isomerase	PANTHER	PTHR21139	TRIOSEPHOSPHATE ISOMERASE	coord: 122..223
IPR000652	Triosephosphate isomerase	PROSITE	PS51440	TIM_2	coord: 56..116 score: 16.313274
IPR000652	Triosephosphate isomerase	PROSITE	PS51440	TIM_2	coord: 119..217 score: 34.860394
IPR000652	Triosephosphate isomerase	CDD	cd00311	TIM	coord: 57..216 e-value: 8.89092E-67 score: 203.922
IPR013785	Aldolase-type TIM barrel	GENE3D	3.20.20.70	Aldolase class I	coord: 39..121 e-value: 2.4E-18 score: 68.2 coord: 122..224 e-value: 5.9E-46 score: 158.7
None	No IPR available	PANTHER	PTHR21139:SF20	TRIOSEPHOSPHATE ISOMERASE, CHLOROPLASTIC	coord: 122..223
None	No IPR available	PANTHER	PTHR21139:SF20	TRIOSEPHOSPHATE ISOMERASE, CHLOROPLASTIC	coord: 4..121
IPR020861	Triosephosphate isomerase, active site	PROSITE	PS00171	TIM_1	coord: 133..143
IPR035990	Triosephosphate isomerase superfamily	SUPERFAMILY	51351	Triosephosphate isomerase (TIM)	coord: 53..217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g229760.m01	Csor.00g229760.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016052	carbohydrate catabolic process
biological_process	GO:1901135	carbohydrate derivative metabolic process
biological_process	GO:1901576	organic substance biosynthetic process
biological_process	GO:0019637	organophosphate metabolic process
biological_process	GO:0006796	phosphate-containing compound metabolic process
biological_process	GO:0044281	small molecule metabolic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0004807	triose-phosphate isomerase activity
molecular_function	GO:0003824	catalytic activity