Csor.00g206340 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g206340
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr06: 3263431 .. 3265539 (-)
RNA-Seq Expression	Csor.00g206340
Synteny	Csor.00g206340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACAAGCCAACCAATGGGGATTAAAGAAAGAAAGAGAGGTTACCGAATACCAGTACAGGCAGTTGGCTTCGTTATTCCCGACGGGTAAAGTTGCCCCGGTGGAACCGGTCATCCGGTGGGCGACTCCGATAAACTGCCAGCTAATTTCTTCTGGCAACCACCGCCCACAGTAATTCATAATCAATCTCCAATCACCCCTTATTCTTCGGCCACGTGTTCAATAGGTTCAGCTGCTACGCCACGTTATGCTCTGTCACTCACTCACGCGCCTACGTGTGTTTCGAGAACCTCACGAGCTTTACGGAAAGCGCTTCTGAAAAGTCTATATTACCCCCGAAATCTACGAGGAAAGTAGCGGAAAAAGGTGGAGAAAATTGGACTTTGCTACGTAAGCATATAACGAACTTATGAAGGTGGGTGGAAACGAATCCTCTGCGGGTGGGCCGTTTCAACTTTCGTAAACACTCACGTGGGATTTTATGCCCTCCTTGTGGGATTACATCTGGACCGTTCAGATTGGATATGTTTGGACGGTGGGGATGGACCCATATGTATATATATATATATTTTTTTTTCTATTTAAATGGCTCATTCATACGGGGGAAAAGAATAAATCCTTTTCTTCTCTCTTTCTTTCATCCGACACAAACTCTTCGATTATACCGCATGTGAATTGACTATTTTACCCTTTATTCAGTTATTTTTATAGTTTTTGGGAATAATTTGTTAAAAATAGAATACTAATGTTTTCTTTCTCAAATAAACATAAATTTGTTCTATCATTTTTTTAATATTTAAAATATTATTAAAATCATTAAAAGTTTTTTTTAGCATTTTTTAAACACGATTAATATTTTTTATTTTATAATCCAAACCATATATTTAAGGTGGCCTTTGATTTCTTTTTAATGTCATAAACTTCATAAATTATAATAAAAATGTTATAATTACTCAACTGTATTTTGATAATAATAAAGTGCTATAATACATGTTTGATTCATGTGTGACTTTTATTTTTATAAATTTTTCTTAATTATCATATCATTATATTATTTTTAATTTAGATATGGTATCAGTTTATTTATATACTTCTGGTTTTTGGTGCTACAATGAAATTTAAAATTTAGAATAAAAATGTAATATTTTGTAATTTATGAACTAATTAAAAATAAAATTCGAAACACAAAGGATAAAAACAGGTAACTTTATCAAAATCTTATAAACAAATGTGACAGTTAAAAAAAAAAAAAAAAATTACGGCACATTTTTACATTTATGTTATCCCAAAAAGATTCCATCTCCAAGGGTGAAAAAAAAAATATTTTTACAAATTTTAAATGTTATTTTCATTGGAGAATAAATAATAATAAAAAATTATGACATAAAATAAAATAAAATAAAATAATATATATAAATTATTTTTTGAAATTAACTATAAATTCAAATTAGTTTTCAACTCATATTAATTTCATAAAACACTAGGAGAGGTACAAAAGAAATTAATAATAAATAAAACAGTCCCGGAGGGGTAAAAAGGTAAAAACATCAACGGTAGGTAACAGAAACTCGGACGGAGAAAAACGCGTTTCGGCTTTTCGGGCGTTTGGTTGAACCACCTAACAACAACTGCTATCCTCAAATATATATTTTTAATAAAAATAAAAATAAAAATAAATAAATAATAAGAAAAGAAAAAAAAAAACTGATTGGGTGGGTTAGTTTTACATTTACTCAATAAAGCGTTTTAATATTCTTGAGGTATAAAAGTATAAATTATCCTGTTCTAGCAACTTTTTTCTGTTTTCTACGCCTTTCGCTCCCTTTTCTCCTCTCTTTTCATTTTCTACTGTTCTCTCCCTCCAGTTTCTCTCTCTCTCGCCGGTGAATCTCCTTTTCCTCTTGCCGGAAAAGTCCTCGACGTCCTCCAACCACCGCCGTCTTCCGCCTTAGAGATTCTCACTTTATTGCCGCTTGCGTGTTCTTGTCGCTTTCCTTCGATTCCACTCCGGAGCCTCTGGATCTCTGAATCTGACTCTCCTTCTTCTGGTTCTTCGCCTCTTTCGAGAATGTGGTCCGCCTCCTCCTCCTTTCGCCCTTGCACTTGA

mRNA sequence

ATGCCACAAGCCAACCAATGGGGATTAAAGAAAGAAAGAGAGGTTACCGAATACCAGTACAGGCAGTTGGCTTCGTTATTCCCGACGGGTAAAGTTGCCCCGGTGGAACCGGTCATCCGGTTCAGCTGCTACGCCACGTTATGCTCTGTCACTCACTCACGCGCCTACGTGTGTTTCGAGAACCTCACGAGCTTTACGGAAAGCGCTTCTGAAAAGTCTATATTACCCCCGAAATCTACGAGGAAAGTAGCGGAAAAAGGTGGAGAAAATTGGACTTTGCTACTTTCTCTCTCTCTCGCCGGTGAATCTCCTTTTCCTCTTGCCGGAAAAGTCCTCGACGTCCTCCAACCACCGCCGTCTTCCGCCTTAGAGATTCTCACTTTATTGCCGCTTGCGTGTTCTTGTCGCTTTCCTTCGATTCCACTCCGGAGCCTCTGGATCTCTGAATCTGACTCTCCTTCTTCTGGTTCTTCGCCTCTTTCGAGAATGTGGTCCGCCTCCTCCTCCTTTCGCCCTTGCACTTGA

Coding sequence (CDS)

ATGCCACAAGCCAACCAATGGGGATTAAAGAAAGAAAGAGAGGTTACCGAATACCAGTACAGGCAGTTGGCTTCGTTATTCCCGACGGGTAAAGTTGCCCCGGTGGAACCGGTCATCCGGTTCAGCTGCTACGCCACGTTATGCTCTGTCACTCACTCACGCGCCTACGTGTGTTTCGAGAACCTCACGAGCTTTACGGAAAGCGCTTCTGAAAAGTCTATATTACCCCCGAAATCTACGAGGAAAGTAGCGGAAAAAGGTGGAGAAAATTGGACTTTGCTACTTTCTCTCTCTCTCGCCGGTGAATCTCCTTTTCCTCTTGCCGGAAAAGTCCTCGACGTCCTCCAACCACCGCCGTCTTCCGCCTTAGAGATTCTCACTTTATTGCCGCTTGCGTGTTCTTGTCGCTTTCCTTCGATTCCACTCCGGAGCCTCTGGATCTCTGAATCTGACTCTCCTTCTTCTGGTTCTTCGCCTCTTTCGAGAATGTGGTCCGCCTCCTCCTCCTTTCGCCCTTGCACTTGA

Protein sequence

MPQANQWGLKKEREVTEYQYRQLASLFPTGKVAPVEPVIRFSCYATLCSVTHSRAYVCFENLTSFTESASEKSILPPKSTRKVAEKGGENWTLLLSLSLAGESPFPLAGKVLDVLQPPPSSALEILTLLPLACSCRFPSIPLRSLWISESDSPSSGSSPLSRMWSASSSFRPCT

Homology

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BLAST of Csor.00g206340 vs. NCBI nr
Match: KAG6596721.1 (hypothetical protein SDJN03_09901, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 345 bits (884), Expect = 1.62e-119
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MPQANQWGLKKEREVTEYQYRQLASLFPTGKVAPVEPVIRFSCYATLCSVTHSRAYVCFE 60
           MPQANQWGLKKEREVTEYQYRQLASLFPTGKVAPVEPVIRFSCYATLCSVTHSRAYVCFE
Sbjct: 1   MPQANQWGLKKEREVTEYQYRQLASLFPTGKVAPVEPVIRFSCYATLCSVTHSRAYVCFE 60

Query: 61  NLTSFTESASEKSILPPKSTRKVAEKGGENWTLLLSLSLAGESPFPLAGKVLDVLQPPPS 120
           NLTSFTESASEKSILPPKSTRKVAEKGGENWTLLLSLSLAGESPFPLAGKVLDVLQPPPS
Sbjct: 61  NLTSFTESASEKSILPPKSTRKVAEKGGENWTLLLSLSLAGESPFPLAGKVLDVLQPPPS 120

Query: 121 SALEILTLLPLACSCRFPSIPLRSLWISESDSPSSGSSPLSRMWSASSSFRPCT 174
           SALEILTLLPLACSCRFPSIPLRSLWISESDSPSSGSSPLSRMWSASSSFRPCT
Sbjct: 121 SALEILTLLPLACSCRFPSIPLRSLWISESDSPSSGSSPLSRMWSASSSFRPCT 174

The following BLAST results are available for this feature:

BLAST of Csor.00g206340 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g206340 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596721.1	1.62e-119	100.00	hypothetical protein SDJN03_09901, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g206340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g206340 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g206340.m01	Csor.00g206340.m01	mRNA