Csor.00g192500 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g192500
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptioncyclin-dependent protein kinase inhibitor SMR2
LocationCsor_Chr01: 3205272 .. 3205478 (-)
RNA-Seq ExpressionCsor.00g192500
SyntenyCsor.00g192500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGATACCGAACGCCGGAGCGACAGGAGTTTCGAATTCAGCCGGCAAAGGTGCCACCGCCGCCGCCGAGGAAAAAGGCGGTTGCGGCGGCAAAGAAGCGGGAGGCTCCAGCGAATGGATATTTTCAACTGCCTGACGATCTTGAAGTATATTTTTTAGTGGTTCCTAGAGTGGACGCCGGCGGTGATCTGAGTGGTGGCTAG

mRNA sequence

ATGGAGGGATACCGAACGCCGGAGCGACAGGAGTTTCGAATTCAGCCGGCAAAGGTGCCACCGCCGCCGCCGAGGAAAAAGGCGGTTGCGGCGGCAAAGAAGCGGGAGGCTCCAGCGAATGGATATTTTCAACTGCCTGACGATCTTGAAGTATATTTTTTAGTGGTTCCTAGAGTGGACGCCGGCGGTGATCTGAGTGGTGGCTAG

Coding sequence (CDS)

ATGGAGGGATACCGAACGCCGGAGCGACAGGAGTTTCGAATTCAGCCGGCAAAGGTGCCACCGCCGCCGCCGAGGAAAAAGGCGGTTGCGGCGGCAAAGAAGCGGGAGGCTCCAGCGAATGGATATTTTCAACTGCCTGACGATCTTGAAGTATATTTTTTAGTGGTTCCTAGAGTGGACGCCGGCGGTGATCTGAGTGGTGGCTAG

Protein sequence

MEGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPRVDAGGDLSGG
Homology
BLAST of Csor.00g192500 vs. ExPASy Swiss-Prot
Match: Q1JPP8 (Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 GN=SMR4 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 8.2e-07
Identity = 31/60 (51.67%), Postives = 36/60 (60.00%), Query Frame = 0

Query: 2  EGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPRVDA 61
          EG  TP    +RI  A V PPPPRKK +   +KR+ P NGYFQ P DLE  F   PR +A
Sbjct: 13 EGCTTPRSTMYRIPVASVCPPPPRKK-LMVVRKRDPPRNGYFQ-PPDLETLFYAQPRREA 70

BLAST of Csor.00g192500 vs. NCBI nr
Match: KAG6607256.1 (Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140 bits (353), Expect = 6.54e-42
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 1  MEGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPRVD 60
          MEGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPRVD
Sbjct: 1  MEGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPRVD 60

Query: 61 AGGDLSGG 68
          AGGDLSGG
Sbjct: 61 AGGDLSGG 68

BLAST of Csor.00g192500 vs. NCBI nr
Match: KAG7036940.1 (Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135 bits (341), Expect = 4.44e-40
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 0

Query: 1  MEGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPRVD 60
          MEGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPRV 
Sbjct: 1  MEGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPRVA 60

Query: 61 AGGDLSGG 68
           GGDLSGG
Sbjct: 61 GGGDLSGG 68

BLAST of Csor.00g192500 vs. NCBI nr
Match: KAF8022732.1 (hypothetical protein BT93_F0293 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 68.2 bits (165), Expect = 4.25e-13
Identity = 33/57 (57.89%), Postives = 36/57 (63.16%), Query Frame = 0

Query: 2  EGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPR 58
          +G  TP R EFRI  A  PPPPPRKK +   KKR  P NGYFQ PDDLE+ F    R
Sbjct: 20 DGCSTPTRGEFRIPAASAPPPPPRKKPLCGGKKRGPPKNGYFQAPDDLELLFAASKR 76

BLAST of Csor.00g192500 vs. NCBI nr
Match: KAA0067757.1 (hypothetical protein E6C27_scaffold352G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.10e-12
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 1  MEGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPA--NGYFQLP-DDLEVYFL 54
          M+G+RTPER EFRI PA +PPPP +K  V   K REA    NGYFQLP DDLE +FL
Sbjct: 1  MDGFRTPERPEFRIPPASLPPPPRKKPVVVVKKMREAVPENNGYFQLPADDLERFFL 57

BLAST of Csor.00g192500 vs. NCBI nr
Match: XP_030542538.1 (cyclin-dependent protein kinase inhibitor SMR4 [Rhodamnia argentea])

HSP 1 Score: 64.7 bits (156), Expect = 6.83e-12
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 0

Query: 2  EGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPRVDA 61
          EG  TP+ +E+RI P  + PPPP+KK  A+ K R+AP NGYFQ P DL+  F V PR +A
Sbjct: 5  EGCTTPKHEEYRIPPPSICPPPPKKKKPASGKMRDAPKNGYFQ-PPDLDALFSVPPRREA 63

BLAST of Csor.00g192500 vs. ExPASy TrEMBL
Match: A0A5A7VKP1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00780 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.32e-13
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 1  MEGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPA--NGYFQLP-DDLEVYFL 54
          M+G+RTPER EFRI PA +PPPP +K  V   K REA    NGYFQLP DDLE +FL
Sbjct: 1  MDGFRTPERPEFRIPPASLPPPPRKKPVVVVKKMREAVPENNGYFQLPADDLERFFL 57

BLAST of Csor.00g192500 vs. ExPASy TrEMBL
Match: A0A059D4M4 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B02319 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.39e-12
Identity = 32/57 (56.14%), Postives = 36/57 (63.16%), Query Frame = 0

Query: 2  EGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPR 58
          +G  TP R EFRI  A  PPPPPRKK   + KKR  P +GYFQ PDDLE+ F    R
Sbjct: 20 DGCATPTRGEFRIPAASAPPPPPRKKQSCSGKKRGPPKDGYFQAPDDLELLFAAGKR 76

BLAST of Csor.00g192500 vs. ExPASy TrEMBL
Match: W9RUH3 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_025279 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.83e-12
Identity = 31/57 (54.39%), Postives = 37/57 (64.91%), Query Frame = 0

Query: 2  EGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPR 58
          +G  TP+R E RI+    PPPPPRKK   A KKR+ P NGYF  P DLE +F + PR
Sbjct: 17 DGCATPKRDECRIREMSAPPPPPRKKPFVAGKKRDRPKNGYFH-PPDLEAFFAMAPR 72

BLAST of Csor.00g192500 vs. ExPASy TrEMBL
Match: A0A7I8K045 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_01001718 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.64e-11
Identity = 34/60 (56.67%), Postives = 39/60 (65.00%), Query Frame = 0

Query: 2  EGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPRVDA 61
          EG+ TP+R E RI      PPPPRKK V   K+RE P NGYFQ P DLE  F +VPR +A
Sbjct: 11 EGWETPKRVECRIPVVFACPPPPRKKPVVFTKRREPPKNGYFQ-PPDLEALFKLVPRREA 69

BLAST of Csor.00g192500 vs. ExPASy TrEMBL
Match: A0A2I0B604 (Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash017695 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.88e-11
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 2  EGYRTPERQEFRIQPAKVP-PPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPRVD 61
          E + TP+R+E +I PA++P PPPPRK+    AK+REAP  GYFQ P DLE  F +VPR +
Sbjct: 8  ERWETPKRRECKI-PAELPCPPPPRKRLPGPAKRREAPKGGYFQ-PPDLEALFAIVPRSE 66

BLAST of Csor.00g192500 vs. TAIR 10
Match: AT5G02220.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 53.9 bits (128), Expect = 5.8e-08
Identity = 31/60 (51.67%), Postives = 36/60 (60.00%), Query Frame = 0

Query: 2  EGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPRVDA 61
          EG  TP    +RI  A V PPPPRKK +   +KR+ P NGYFQ P DLE  F   PR +A
Sbjct: 13 EGCTTPRSTMYRIPVASVCPPPPRKK-LMVVRKRDPPRNGYFQ-PPDLETLFYAQPRREA 70

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q1JPP88.2e-0751.67Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 G... [more]
Match NameE-valueIdentityDescription
KAG6607256.16.54e-42100.00Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma ... [more]
KAG7036940.14.44e-4097.06Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma ... [more]
KAF8022732.14.25e-1357.89hypothetical protein BT93_F0293 [Corymbia citriodora subsp. variegata][more]
KAA0067757.11.10e-1263.16hypothetical protein E6C27_scaffold352G00780 [Cucumis melo var. makuwa][more]
XP_030542538.16.83e-1253.33cyclin-dependent protein kinase inhibitor SMR4 [Rhodamnia argentea][more]
Match NameE-valueIdentityDescription
A0A5A7VKP15.32e-1363.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A059D4M43.39e-1256.14Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B02319 PE=4 SV... [more]
W9RUH36.83e-1254.39Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_025279 PE=4 SV=1[more]
A0A7I8K0451.64e-1156.67Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_01001718 PE=4 SV... [more]
A0A2I0B6045.88e-1155.74Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash017695 P... [more]
Match NameE-valueIdentityDescription
AT5G02220.15.8e-0851.67unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availablePANTHERPTHR33142:SF56CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR5coord: 2..58
IPR040389Cyclin-dependent protein kinase inhibitor SMRPANTHERPTHR33142CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13coord: 2..58

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g192500.m01Csor.00g192500.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032875 regulation of DNA endoreduplication