Csor.00g188110 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATGTTAATGGTTTTTGGCCGCTTGATAGGAGAGAAGCAATTGCTCAAGTTCTGCTTAAGAATGTAGATTTTAAGAACGAGTTTCATTGTGACCAGAAATTTCACTCTGTAGAAGAGTTAGCTGAACATGTTGTAAACTGTGGATTTAGGTCTCTAATCTGCACAAATGAAGGCTGCTGTGCTACATTTTGTGCAAACCACGCAGAACAGCATGATTCAATTTGCCCCTTCAAGATAATTCTGTGTGAACAGAAGTGTTCTGCCTTCATTATGAGACGCGAAATGGATCGCCATTGCATAACTGTTTGTCCTATGAAGCTTGTGAACTGCCCCTTCCATAATTTGGGTTGTCAATCCCCTGTTCCTTACAGTTTGATATCGCAGCATTGTTCAGAGAGTTTTGATTCTCATTTGCTGCTTATTCTTCACTCTGTTCACAAGGAGGCAAATGAAGAGACTCTTAAACATAGACGGCAACAGCTTGAAGAGGTGAGATTTACAGATTTGTTTGAATTCATTTATAATTCTTAAATGGGCTTTTATTTTTGCTGAATCAATGGACACCAAAGTGTGCATATATCAAAATGTGAGTTCACTGTCTATTTGAGATCCCACATTAGTTGGGGAGGAGAACGAAACACCATTTATAAGGCGGTGGAAACCTATCCCTAGTAGACACGTTTTAAAAATCTTGAGGGGAAGTCCGAAAGAGAAAACCCAAAGAGGACAATATTTGTTATCGGTGGGCTTGGGATGTTACAAATGGTATCAGAGCCAGACATTATTGGGCGATGTGCCAGCGAGGAGTCTGAGCCTTGAAGGGGGTGGATTGGGGTCCCACATTGATTGGAGAAGGGAACGAGTGTCAGCGAGAACACTGGGCCCTAAAGGGGGGTGGATCGTGAGATCCCACATTGGTTGGAGAGGAAAACGAAACACCATTTATAAGGGTGTGAAAACCTCTCCCTAGTAGACGCATTTCAGAAACTTTGAGGGGAAGCTTGAAAGGGAAAGCCCAAAGAGGACAACATCGGTTAGCGGTGGGCTTGAGATGTTACAATCTATTATTTAACGACTTTTGTCATGCCATATCGAATATATGAAATGATATTCTTTTGCTACTCGAATGTGTAAGCTTGATTTGTTAATTGCTGATTTTTTTGGCTGCCCAAATCTTGGTATAACCTCAGAAATACTATGAATGATGCAAGCATTTCCTATCTATATGGAAAACTGCAAGATAACTGAATGGGTATTATGCTATGAAATTATTTGTTAATCGATGTGATTCATTATTCTGGTGTGGCTTTCTCTGTAATTTTCCACATACTATTTTCAATTTGCATAAGATGTTAGATGAATCATACATGCTTAGTGTAAGAACTACACTAAGCCACCGCGAGTAGATATTGTTTTCTTTGGGCTTTCCCTTCCAAACTAGTTCCTCAAGGTTTTAAAACGCATCCACTAAGGAGAGGTTTCCACATCCTTATAAGGAATGTTTTGTCTCTCCTCTCCAACCGACGTAGGATCTCACACTTAGAACATCCTGAAATTATGAAATATATAGCTAGTGAAGTTTCTCCCCTTGTCTTTGCTTTCTGGACAAAGGTTAACTAGTTGAGAAGGAAGGGGGATTCAAGCTGTTAAGTTGAGAATAGATTAAGCTGCATTATCATCAATTACTTGTATCTTCTTGTCTATTCTAATTACAGTTCTAATGATTCTTCCCCAGGCATCATCACTTGACTACCTTAGAGGGCTCCAAAATCTGCGATTGTTAACCTCGAAAATCAAAGAACTGGATTCTAAGCTAGGACCATTAGTAGTCATTGGCACGAAGGAGGACACTGAAGAAGCGAAGGACGATGCGTCTAGTAAAACTGATGAAGAGAAGGACAAGTCTAATGTAACGGACGAAAAGAAGGGCGTGCCTACTGCAACAGAAGAAACGAAGGACGACGCATCTATTGTAACAACTGAAGAACCGAACGATGCTTCTAAGGCCTCGGAAGAAACGGAGGATGCTTCTAAGACAACGGAAGAACCAAACGATGCTTCTAAGGCAACGGAAGAAAGGAAGAGCGGTTCAAATGTAGTAAGAAATGATTCAGATGAAGCTGAAAGATAA ATGGATGTTAATGGTTTTTGGCCGCTTGATAGGAGAGAAGCAATTGCTCAAGTTCTGCTTAAGAATGTAGATTTTAAGAACGAGTTTCATTGTGACCAGAAATTTCACTCTGTAGAAGAGTTAGCTGAACATGTTGTAAACTGTGGATTTAGGTCTCTAATCTGCACAAATGAAGGCTGCTGTGCTACATTTTGTGCAAACCACGCAGAACAGCATGATTCAATTTGCCCCTTCAAGATAATTCTGTGTGAACAGAAGTGTTCTGCCTTCATTATGAGACGCGAAATGGATCGCCATTGCATAACTGTTTGTCCTATGAAGCTTGTGAACTGCCCCTTCCATAATTTGGGTTGTCAATCCCCTGTTCCTTACAGTTTGATATCGCAGCATTGTTCAGAGAGTTTTGATTCTCATTTGCTGCTTATTCTTCACTCTGTTCACAAGGAGGCAAATGAAGAGACTCTTAAACATAGACGGCAACAGCTTGAAGAGGCATCATCACTTGACTACCTTAGAGGGCTCCAAAATCTGCGATTGTTAACCTCGAAAATCAAAGAACTGGATTCTAAGCTAGGACCATTAGTAGTCATTGGCACGAAGGAGGACACTGAAGAAGCGAAGGACGATGCGTCTAGTAAAACTGATGAAGAGAAGGACAAGTCTAATGTAACGGACGAAAAGAAGGGCGTGCCTACTGCAACAGAAGAAACGAAGGACGACGCATCTATTGTAACAACTGAAGAACCGAACGATGCTTCTAAGGCCTCGGAAGAAACGGAGGATGCTTCTAAGACAACGGAAGAACCAAACGATGCTTCTAAGGCAACGGAAGAAAGGAAGAGCGGTTCAAATGTAGTAAGAAATGATTCAGATGAAGCTGAAAGATAA ATGGATGTTAATGGTTTTTGGCCGCTTGATAGGAGAGAAGCAATTGCTCAAGTTCTGCTTAAGAATGTAGATTTTAAGAACGAGTTTCATTGTGACCAGAAATTTCACTCTGTAGAAGAGTTAGCTGAACATGTTGTAAACTGTGGATTTAGGTCTCTAATCTGCACAAATGAAGGCTGCTGTGCTACATTTTGTGCAAACCACGCAGAACAGCATGATTCAATTTGCCCCTTCAAGATAATTCTGTGTGAACAGAAGTGTTCTGCCTTCATTATGAGACGCGAAATGGATCGCCATTGCATAACTGTTTGTCCTATGAAGCTTGTGAACTGCCCCTTCCATAATTTGGGTTGTCAATCCCCTGTTCCTTACAGTTTGATATCGCAGCATTGTTCAGAGAGTTTTGATTCTCATTTGCTGCTTATTCTTCACTCTGTTCACAAGGAGGCAAATGAAGAGACTCTTAAACATAGACGGCAACAGCTTGAAGAGGCATCATCACTTGACTACCTTAGAGGGCTCCAAAATCTGCGATTGTTAACCTCGAAAATCAAAGAACTGGATTCTAAGCTAGGACCATTAGTAGTCATTGGCACGAAGGAGGACACTGAAGAAGCGAAGGACGATGCGTCTAGTAAAACTGATGAAGAGAAGGACAAGTCTAATGTAACGGACGAAAAGAAGGGCGTGCCTACTGCAACAGAAGAAACGAAGGACGACGCATCTATTGTAACAACTGAAGAACCGAACGATGCTTCTAAGGCCTCGGAAGAAACGGAGGATGCTTCTAAGACAACGGAAGAACCAAACGATGCTTCTAAGGCAACGGAAGAAAGGAAGAGCGGTTCAAATGTAGTAAGAAATGATTCAGATGAAGCTGAAAGATAA MDVNGFWPLDRREAIAQVLLKNVDFKNEFHCDQKFHSVEELAEHVVNCGFRSLICTNEGCCATFCANHAEQHDSICPFKIILCEQKCSAFIMRREMDRHCITVCPMKLVNCPFHNLGCQSPVPYSLISQHCSESFDSHLLLILHSVHKEANEETLKHRRQQLEEASSLDYLRGLQNLRLLTSKIKELDSKLGPLVVIGTKEDTEEAKDDASSKTDEEKDKSNVTDEKKGVPTATEETKDDASIVTTEEPNDASKASEETEDASKTTEEPNDASKATEERKSGSNVVRNDSDEAER Homology
BLAST of Csor.00g188110 vs. ExPASy Swiss-Prot
Match: B5DF45 (TNF receptor-associated factor 6 OS=Rattus norvegicus OX=10116 GN=Traf6 PE=2 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 1.0e-08 Identity = 35/131 (26.72%), Postives = 59/131 (45.04%), Query Frame = 0
BLAST of Csor.00g188110 vs. ExPASy Swiss-Prot
Match: Q557K0 (TNF receptor-associated factor family protein DDB_G0273433/DDB_G0273509 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0273433 PE=3 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.3e-08 Identity = 56/205 (27.32%), Postives = 88/205 (42.93%), Query Frame = 0
BLAST of Csor.00g188110 vs. ExPASy Swiss-Prot
Match: Q9BUZ4 (TNF receptor-associated factor 4 OS=Homo sapiens OX=9606 GN=TRAF4 PE=1 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 7.1e-07 Identity = 38/128 (29.69%), Postives = 60/128 (46.88%), Query Frame = 0
BLAST of Csor.00g188110 vs. ExPASy Swiss-Prot
Match: Q54FG0 (TNF receptor-associated factor family protein DDB_G0290883 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0290883 PE=3 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 7.1e-07 Identity = 28/100 (28.00%), Postives = 52/100 (52.00%), Query Frame = 0
BLAST of Csor.00g188110 vs. ExPASy Swiss-Prot
Match: P11467 (RING finger protein DG17 OS=Dictyostelium discoideum OX=44689 GN=zfaA PE=2 SV=2) HSP 1 Score: 55.1 bits (131), Expect = 1.6e-06 Identity = 28/100 (28.00%), Postives = 51/100 (51.00%), Query Frame = 0
BLAST of Csor.00g188110 vs. NCBI nr
Match: KAG6595647.1 (TNF receptor-associated factor 6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 570 bits (1469), Expect = 1.14e-204 Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0
BLAST of Csor.00g188110 vs. NCBI nr
Match: KAG7027608.1 (hypothetical protein SDJN02_11622 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 566 bits (1459), Expect = 9.39e-201 Identity = 293/295 (99.32%), Postives = 293/295 (99.32%), Query Frame = 0
BLAST of Csor.00g188110 vs. NCBI nr
Match: XP_022925059.1 (uncharacterized protein LOC111432420 isoform X1 [Cucurbita moschata]) HSP 1 Score: 543 bits (1400), Expect = 6.03e-192 Identity = 280/284 (98.59%), Postives = 280/284 (98.59%), Query Frame = 0
BLAST of Csor.00g188110 vs. NCBI nr
Match: XP_022925060.1 (uncharacterized protein LOC111432420 isoform X2 [Cucurbita moschata]) HSP 1 Score: 518 bits (1335), Expect = 3.28e-182 Identity = 270/284 (95.07%), Postives = 270/284 (95.07%), Query Frame = 0
BLAST of Csor.00g188110 vs. NCBI nr
Match: XP_023517495.1 (uncharacterized protein LOC111781244 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 504 bits (1297), Expect = 2.20e-176 Identity = 260/277 (93.86%), Postives = 263/277 (94.95%), Query Frame = 0
BLAST of Csor.00g188110 vs. ExPASy TrEMBL
Match: A0A6J1EB13 (uncharacterized protein LOC111432420 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111432420 PE=4 SV=1) HSP 1 Score: 543 bits (1400), Expect = 2.92e-192 Identity = 280/284 (98.59%), Postives = 280/284 (98.59%), Query Frame = 0
BLAST of Csor.00g188110 vs. ExPASy TrEMBL
Match: A0A6J1EGU3 (uncharacterized protein LOC111432420 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111432420 PE=4 SV=1) HSP 1 Score: 518 bits (1335), Expect = 1.59e-182 Identity = 270/284 (95.07%), Postives = 270/284 (95.07%), Query Frame = 0
BLAST of Csor.00g188110 vs. ExPASy TrEMBL
Match: A0A6J1HRU6 (uncharacterized protein LOC111466027 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466027 PE=4 SV=1) HSP 1 Score: 461 bits (1185), Expect = 4.43e-160 Identity = 230/244 (94.26%), Postives = 236/244 (96.72%), Query Frame = 0
BLAST of Csor.00g188110 vs. ExPASy TrEMBL
Match: A0A6J1HMR1 (uncharacterized protein LOC111466027 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466027 PE=4 SV=1) HSP 1 Score: 459 bits (1181), Expect = 2.54e-159 Identity = 234/253 (92.49%), Postives = 240/253 (94.86%), Query Frame = 0
BLAST of Csor.00g188110 vs. ExPASy TrEMBL
Match: A0A6J1HRN5 (uncharacterized protein LOC111467177 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467177 PE=4 SV=1) HSP 1 Score: 409 bits (1050), Expect = 7.15e-137 Identity = 214/278 (76.98%), Postives = 239/278 (85.97%), Query Frame = 0
BLAST of Csor.00g188110 vs. TAIR 10
Match: AT3G11950.1 (TRAF-like superfamily protein ) HSP 1 Score: 225.7 bits (574), Expect = 4.8e-59 Identity = 134/303 (44.22%), Postives = 185/303 (61.06%), Query Frame = 0
BLAST of Csor.00g188110 vs. TAIR 10
Match: AT3G11950.2 (TRAF-like superfamily protein ) HSP 1 Score: 225.7 bits (574), Expect = 4.8e-59 Identity = 134/303 (44.22%), Postives = 185/303 (61.06%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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