Csor.00g186950 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g186950
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionCellulose synthase
LocationCsor_Chr14: 6540414 .. 6542007 (+)
RNA-Seq ExpressionCsor.00g186950
SyntenyCsor.00g186950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACTTGGCGAGGAACCGATTCTCTCGCGGTTGGACCGGCTGGATTATATGGTGAGCTTGTTTTATAATTTTTTTTTTTTTTTTTTAATGTGTTTGTGAATATGTTATTGTGTGGACATGGTGGAGAAAAGGATGGTTTTGATGTTTGTTTCTCGGGAAAATGACCGAGAAAATGAGAAGGGTTGGTTGGTGAGAGAATCCGTTCATGATTCCTTTTGTAATTTTGACGTTGATGTTTCTTCCTTTCTACATGTTTTTTTTTTTTTTTTTTTTTTTTTTCAGTTAGGCTGTTTTTCGTAAAGTTTAAGGTTTGATTATGTTGGAGTTCTATGTTTTTTTGTTCAATTAAGGGAGTGTCTTTACTAGCTATATATGTTTTAGTATTCATATTTGCGGGAATTATCTTGATCGTCGTATATTGACCTAACTGAAAGTAAGAACTCTTTCTTCGTTCTCTGTCACCTGAACCTTTATTTCCTTAGGTATTTCACTTTTATAGTCGATAATATAAAAGATCAAGTCACAACTTTGAACTTTTTTCGATCTTACTCTTAAATCGGAACAAAAACAGTTGAGTCTATGTGATCATGCATGAAAGTTCTCCATCTTTGTCTTCGTTACGTCATAGACATCCCTAGAACCGATCAATTTTTTCTCATCAAATCGAGACGGGTTTTTAATTATTTACCTATTTATTAAAATTAGGTTTGTCATCTATCCTACACCCTTGGTAGGGTTATTGTAGGTGAGAATGTTTGTTTAATCCATCACACTGCGGGAGTTATCTTATTTATAATCAAATAAATTATAAGAATATAGAAAGAGAGAAACCTACCTAGGAACACAAATATTTAGATATTTACCTTATAATAAAATATTAAATATGATATATACGTAAAATATAATTTAGTATTAAATATTATTATAGAAACACAAATATTTAGATATTTACCTTATAATAAAATATTTTATTATATATGATATAGACGTAAAATATAATTTAGTATTAAATATTATTATTATTAAAAAAAAATTGTGAAAATAGTTGTGTGTATAATTTTTGAAGTAATTTTTTTTTTTTTTTTTTTTTTTTTTTGGTAATTATTTATTTTCAACAGTTGAGGCTGATAGAGGAAATTAAAGGGGACAGCAAGTCAGTAAAGAGCTCGTGTACATCTTCCCCGTTAAGTGGGGCCCACACGAGCGATTATCACACATCGTCCGTTGATCTGTCTCCAAGAAGTCTGGAGAAGCAGTGCCGTCCGATCAACGACGCAGTCAAAGTCACTGAACTCAAAGGAAGCCTTCTCGAGAGAATGGACAAGATTGAGGATAGAGTCCTGAAGGTAAAACCCACTCATAAATTAAAATATTAAAATATTGGAAATTTAATTTAATTTAATTTAATTTAATTTTGTAAATAAATATTTAGTTTTTGGTGTGTTGGAATTTTGAACAGCTTTGTTTGCAAGTAGAGGGAGAGATTGAAAGGGAGAGGGAGATGATAATGGTTGAGAAGAGTAGGAAGAAGCCTAAGAAGAGCTTTAAACAACTTTTTCAACACTGTATGACCGGGTCGAGAAAGATGTGA

mRNA sequence

ATGGCACTTGGCGAGGAACCGATTCTCTCGCGGTTGGACCGGCTGGATTATATGTTGAGGCTGATAGAGGAAATTAAAGGGGACAGCAAGTCAGTAAAGAGCTCGTGTACATCTTCCCCGTTAAGTGGGGCCCACACGAGCGATTATCACACATCGTCCGTTGATCTGTCTCCAAGAAGTCTGGAGAAGCAGTGCCGTCCGATCAACGACGCAGTCAAAGTCACTGAACTCAAAGGAAGCCTTCTCGAGAGAATGGACAAGATTGAGGATAGAGTCCTGAAGCTTTGTTTGCAAGTAGAGGGAGAGATTGAAAGGGAGAGGGAGATGATAATGGTTGAGAAGAGTAGGAAGAAGCCTAAGAAGAGCTTTAAACAACTTTTTCAACACTGTATGACCGGGTCGAGAAAGATGTGA

Coding sequence (CDS)

ATGGCACTTGGCGAGGAACCGATTCTCTCGCGGTTGGACCGGCTGGATTATATGTTGAGGCTGATAGAGGAAATTAAAGGGGACAGCAAGTCAGTAAAGAGCTCGTGTACATCTTCCCCGTTAAGTGGGGCCCACACGAGCGATTATCACACATCGTCCGTTGATCTGTCTCCAAGAAGTCTGGAGAAGCAGTGCCGTCCGATCAACGACGCAGTCAAAGTCACTGAACTCAAAGGAAGCCTTCTCGAGAGAATGGACAAGATTGAGGATAGAGTCCTGAAGCTTTGTTTGCAAGTAGAGGGAGAGATTGAAAGGGAGAGGGAGATGATAATGGTTGAGAAGAGTAGGAAGAAGCCTAAGAAGAGCTTTAAACAACTTTTTCAACACTGTATGACCGGGTCGAGAAAGATGTGA

Protein sequence

MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRSLEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLFQHCMTGSRKM
Homology
BLAST of Csor.00g186950 vs. NCBI nr
Match: KAG6581574.1 (hypothetical protein SDJN03_21576, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 262 bits (669), Expect = 6.12e-88
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0

Query: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60
           MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS
Sbjct: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60

Query: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK 120
           LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK
Sbjct: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK 120

Query: 121 KSFKQLFQHCMTGSRKM 137
           KSFKQLFQHCMTGSRKM
Sbjct: 121 KSFKQLFQHCMTGSRKM 137

BLAST of Csor.00g186950 vs. NCBI nr
Match: KAG7018080.1 (hypothetical protein SDJN02_19946 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 260 bits (664), Expect = 3.54e-87
Identity = 136/137 (99.27%), Postives = 136/137 (99.27%), Query Frame = 0

Query: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60
           MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS
Sbjct: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60

Query: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK 120
           LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK
Sbjct: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK 120

Query: 121 KSFKQLFQHCMTGSRKM 137
           KSFKQLFQHCM GSRKM
Sbjct: 121 KSFKQLFQHCMNGSRKM 137

BLAST of Csor.00g186950 vs. NCBI nr
Match: XP_022934271.1 (uncharacterized protein LOC111441483 [Cucurbita moschata])

HSP 1 Score: 257 bits (657), Expect = 4.14e-86
Identity = 134/137 (97.81%), Postives = 136/137 (99.27%), Query Frame = 0

Query: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60
           MALGEEPILSRLDRLDYMLRL+EEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS
Sbjct: 1   MALGEEPILSRLDRLDYMLRLLEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60

Query: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK 120
           LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIERE+EMIMVEKSRKKPK
Sbjct: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREKEMIMVEKSRKKPK 120

Query: 121 KSFKQLFQHCMTGSRKM 137
           KSFKQLFQHCMTGS KM
Sbjct: 121 KSFKQLFQHCMTGSGKM 137

BLAST of Csor.00g186950 vs. NCBI nr
Match: XP_023528604.1 (uncharacterized protein LOC111791474 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 237 bits (605), Expect = 3.52e-78
Identity = 123/137 (89.78%), Postives = 130/137 (94.89%), Query Frame = 0

Query: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60
           MALGEEPILSRLDRL ++LR++EEIKG SKS KSSCTSSP SGAHTSDYHTSSVDLSPRS
Sbjct: 1   MALGEEPILSRLDRLFFLLRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDLSPRS 60

Query: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK 120
           LEK CRP+NDAVKVTELKGSLLER+DKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK
Sbjct: 61  LEKHCRPMNDAVKVTELKGSLLERLDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK 120

Query: 121 KSFKQLFQHCMTGSRKM 137
           KSFKQL QHCMTGS K+
Sbjct: 121 KSFKQLLQHCMTGSGKI 137

BLAST of Csor.00g186950 vs. NCBI nr
Match: XP_004151057.1 (uncharacterized protein LOC101205386 [Cucumis sativus] >KGN58589.1 hypothetical protein Csa_001276 [Cucumis sativus])

HSP 1 Score: 196 bits (499), Expect = 5.90e-62
Identity = 100/133 (75.19%), Postives = 114/133 (85.71%), Query Frame = 0

Query: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60
           MA+ EEPILSRLDRLD MLR +EEI+G  KS KSSC S+P SG  TSDYHTSSVDLSP+S
Sbjct: 1   MAVAEEPILSRLDRLDVMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60

Query: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK 120
           LEK CRPIN  VKV ELKGSL+ERMD +EDRVLKLC+QVEG++ERE++MIMVEK  +KPK
Sbjct: 61  LEKHCRPINHVVKVAELKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPK 120

Query: 121 KSFKQLFQHCMTG 133
           +SFKQL Q CMTG
Sbjct: 121 RSFKQLVQRCMTG 133

BLAST of Csor.00g186950 vs. ExPASy TrEMBL
Match: A0A6J1F1D1 (uncharacterized protein LOC111441483 OS=Cucurbita moschata OX=3662 GN=LOC111441483 PE=4 SV=1)

HSP 1 Score: 257 bits (657), Expect = 2.00e-86
Identity = 134/137 (97.81%), Postives = 136/137 (99.27%), Query Frame = 0

Query: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60
           MALGEEPILSRLDRLDYMLRL+EEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS
Sbjct: 1   MALGEEPILSRLDRLDYMLRLLEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60

Query: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK 120
           LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIERE+EMIMVEKSRKKPK
Sbjct: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREKEMIMVEKSRKKPK 120

Query: 121 KSFKQLFQHCMTGSRKM 137
           KSFKQLFQHCMTGS KM
Sbjct: 121 KSFKQLFQHCMTGSGKM 137

BLAST of Csor.00g186950 vs. ExPASy TrEMBL
Match: A0A0A0LCD9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G695850 PE=4 SV=1)

HSP 1 Score: 196 bits (499), Expect = 2.86e-62
Identity = 100/133 (75.19%), Postives = 114/133 (85.71%), Query Frame = 0

Query: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60
           MA+ EEPILSRLDRLD MLR +EEI+G  KS KSSC S+P SG  TSDYHTSSVDLSP+S
Sbjct: 1   MAVAEEPILSRLDRLDVMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60

Query: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK 120
           LEK CRPIN  VKV ELKGSL+ERMD +EDRVLKLC+QVEG++ERE++MIMVEK  +KPK
Sbjct: 61  LEKHCRPINHVVKVAELKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPK 120

Query: 121 KSFKQLFQHCMTG 133
           +SFKQL Q CMTG
Sbjct: 121 RSFKQLVQRCMTG 133

BLAST of Csor.00g186950 vs. ExPASy TrEMBL
Match: A0A5A7U299 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00740 PE=4 SV=1)

HSP 1 Score: 194 bits (493), Expect = 2.42e-61
Identity = 101/134 (75.37%), Postives = 116/134 (86.57%), Query Frame = 0

Query: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60
           MA+ EEPILSRLDRLD MLR +EEIKG +KS KSSC S+P SG  TSDYHTSSVDLSP+S
Sbjct: 1   MAVAEEPILSRLDRLDNMLRRLEEIKGCAKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60

Query: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVE-KSRKKP 120
           LEK CRPIN  V+V ELKGSL+ERMD +EDRVLKLC+QVEGE+ERE++M+MV+ K +KKP
Sbjct: 61  LEKHCRPINHVVRVAELKGSLVERMDNLEDRVLKLCIQVEGEMEREKDMVMVDQKKKKKP 120

Query: 121 KKSFKQLFQHCMTG 133
           KKSFKQL Q CMTG
Sbjct: 121 KKSFKQLVQQCMTG 134

BLAST of Csor.00g186950 vs. ExPASy TrEMBL
Match: A0A1S3CFF4 (uncharacterized protein LOC103500315 OS=Cucumis melo OX=3656 GN=LOC103500315 PE=4 SV=1)

HSP 1 Score: 194 bits (493), Expect = 2.42e-61
Identity = 101/134 (75.37%), Postives = 116/134 (86.57%), Query Frame = 0

Query: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60
           MA+ EEPILSRLDRLD MLR +EEIKG +KS KSSC S+P SG  TSDYHTSSVDLSP+S
Sbjct: 1   MAVAEEPILSRLDRLDNMLRRLEEIKGCAKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60

Query: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVE-KSRKKP 120
           LEK CRPIN  V+V ELKGSL+ERMD +EDRVLKLC+QVEGE+ERE++M+MV+ K +KKP
Sbjct: 61  LEKHCRPINHVVRVAELKGSLVERMDNLEDRVLKLCIQVEGEMEREKDMVMVDQKKKKKP 120

Query: 121 KKSFKQLFQHCMTG 133
           KKSFKQL Q CMTG
Sbjct: 121 KKSFKQLVQQCMTG 134

BLAST of Csor.00g186950 vs. ExPASy TrEMBL
Match: A0A6J1DGX0 (uncharacterized protein LOC111020329 OS=Momordica charantia OX=3673 GN=LOC111020329 PE=4 SV=1)

HSP 1 Score: 187 bits (476), Expect = 1.34e-58
Identity = 98/135 (72.59%), Postives = 115/135 (85.19%), Query Frame = 0

Query: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60
           MA+ EEPILSRLDRLD +LR +EEI+G  KS KSSC S+P SG  TSDYHTSSVDLSP+S
Sbjct: 1   MAVAEEPILSRLDRLDNILRRLEEIRGCGKSPKSSCGSTPSSGTLTSDYHTSSVDLSPKS 60

Query: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKS--RKK 120
           LEK CRPI++ +K+TE+KGSL++RMD IEDRVLKLCLQ+EGEIERERE +MV +   +KK
Sbjct: 61  LEKHCRPISNVIKITEVKGSLVQRMDNIEDRVLKLCLQLEGEIERERETLMVSEKNKKKK 120

Query: 121 PKKSFKQLFQHCMTG 133
           PKKSFKQL Q CMTG
Sbjct: 121 PKKSFKQLVQRCMTG 135

BLAST of Csor.00g186950 vs. TAIR 10
Match: AT1G07985.1 (Expressed protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-19
Identity = 62/124 (50.00%), Postives = 84/124 (67.74%), Query Frame = 0

Query: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDL-SPR 60
           MA+ EEPILSRLDR+D+M+R +EE+KG S   +SS  S+P SG        SS+DL SPR
Sbjct: 1   MAVVEEPILSRLDRIDFMVRKLEEMKGSSP--RSSSPSTPSSGT-----QPSSMDLSSPR 60

Query: 61  SLEK-QCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREM-IMVEKSRK 120
           S+ K  CR +    + TE KG+LLER++ +E++VLKLC Q E E+E ER+     +K +K
Sbjct: 61  SIGKVHCRSMEQVREETERKGTLLERLNNVEEQVLKLCSQFEEEVEEERKREDKTDKEKK 117

Query: 121 KPKK 122
            PKK
Sbjct: 121 TPKK 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6581574.16.12e-88100.00hypothetical protein SDJN03_21576, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7018080.13.54e-8799.27hypothetical protein SDJN02_19946 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022934271.14.14e-8697.81uncharacterized protein LOC111441483 [Cucurbita moschata][more]
XP_023528604.13.52e-7889.78uncharacterized protein LOC111791474 [Cucurbita pepo subsp. pepo][more]
XP_004151057.15.90e-6275.19uncharacterized protein LOC101205386 [Cucumis sativus] >KGN58589.1 hypothetical ... [more]
Match NameE-valueIdentityDescription
A0A6J1F1D12.00e-8697.81uncharacterized protein LOC111441483 OS=Cucurbita moschata OX=3662 GN=LOC1114414... [more]
A0A0A0LCD92.86e-6275.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G695850 PE=4 SV=1[more]
A0A5A7U2992.42e-6175.37Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3CFF42.42e-6175.37uncharacterized protein LOC103500315 OS=Cucumis melo OX=3656 GN=LOC103500315 PE=... [more]
A0A6J1DGX01.34e-5872.59uncharacterized protein LOC111020329 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
Match NameE-valueIdentityDescription
AT1G07985.11.3e-1950.00Expressed protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..55
NoneNo IPR availablePANTHERPTHR34190EXPRESSED PROTEINcoord: 4..136
NoneNo IPR availablePANTHERPTHR34190:SF4EXPRESSED PROTEINcoord: 4..136

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g186950.m01Csor.00g186950.m01mRNA