Csor.00g186870 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g186870
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	F-box/WD repeat-containing protein 4
Location	Csor_Chr14: 6596427 .. 6596988 (+)
RNA-Seq Expression	Csor.00g186870
Synteny	Csor.00g186870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCAGTTCTTCTTCACGGTGGCTTTCTCTGCAGTACCTTTGACTCTCTACGTTCCGCCTCTCCGGAGCTTCAATCTCTTCGTCGAGACCATGGAGGAGATACTTCGCGAGTCCAGAACGTATACCAATCGGGTCTATCCGCGGGCTCGGCATGTTTGGTTTAGGGTTTTGGATTGTGTTCTTTGCAGCACCAGGTAGATGATTGTTTTTCTTTTTCTAGGTTTCAAAGTTCACGACTCCGATCTCTCTGTATATACCCTTCCTTCGATTCTCTCTTTTGTATGATAAGATTTGGATGAGTGTGGTTGTGGTGCTGATGATACTGTTCTTGCGGGATTCTGTTGTTAATTGCTGAATGTAACATGTAAGAGGAGGATATGTTTCGAGTTAATTTTCAGGAAAATAAAGAGCTGATGTTCACGCTAATATGTGTACTCTGATGTTCTGTTTCTCTCCTTCCATTCGATTCTCTTTTGTTTTGCTCTGAGTTATGCTTACGGATATATAATTCAGAATCTGGGGGCAGAATTGCTTCAACCTTCTCCCTTTTGACTTCTGA

mRNA sequence

ATGTTGCAGTTCTTCTTCACGGTGGCTTTCTCTGCAGTACCTTTGACTCTCTACGTTCCGCCTCTCCGGAGCTTCAATCTCTTCGTCGAGACCATGGAGGAGATACTTCGCGAGTCCAGAACGTATACCAATCGGGTCTATCCGCGGGCTCGGCATGTTTGGTTTAGGGTTTTGGATTGTGTTCTTTGCAGCACCAGAATCTGGGGGCAGAATTGCTTCAACCTTCTCCCTTTTGACTTCTGA

Coding sequence (CDS)

ATGTTGCAGTTCTTCTTCACGGTGGCTTTCTCTGCAGTACCTTTGACTCTCTACGTTCCGCCTCTCCGGAGCTTCAATCTCTTCGTCGAGACCATGGAGGAGATACTTCGCGAGTCCAGAACGTATACCAATCGGGTCTATCCGCGGGCTCGGCATGTTTGGTTTAGGGTTTTGGATTGTGTTCTTTGCAGCACCAGAATCTGGGGGCAGAATTGCTTCAACCTTCTCCCTTTTGACTTCTGA

Protein sequence

MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDCVLCSTRIWGQNCFNLLPFDF

Homology

[Close]

BLAST of Csor.00g186870 vs. NCBI nr
Match: KAG6581581.1 (hypothetical protein SDJN03_21583, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 170 bits (431), Expect = 1.90e-53
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60

Query: 61 VLCSTRIWGQNCFNLLPFDF 80
          VLCSTRIWGQNCFNLLPFDF
Sbjct: 61 VLCSTRIWGQNCFNLLPFDF 80

[Close]

BLAST of Csor.00g186870 vs. NCBI nr
Match: XP_022934952.1 (uncharacterized protein LOC111441965 [Cucurbita moschata] >XP_022983303.1 uncharacterized protein LOC111481923 [Cucurbita maxima] >XP_023527102.1 uncharacterized protein LOC111790442 [Cucurbita pepo subsp. pepo] >KAG7018085.1 hypothetical protein SDJN02_19951, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136 bits (343), Expect = 3.44e-40
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60

Query: 61 VLCSTR 66
          VLCSTR
Sbjct: 61 VLCSTR 66

[Close]

BLAST of Csor.00g186870 vs. NCBI nr
Match: XP_011651782.1 (uncharacterized protein LOC105434940 [Cucumis sativus] >XP_016902752.1 PREDICTED: uncharacterized protein LOC107991865 [Cucumis melo])

HSP 1 Score: 134 bits (336), Expect = 4.03e-39
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCSTR 66
          +LCSTR
Sbjct: 61 ILCSTR 66

[Close]

BLAST of Csor.00g186870 vs. NCBI nr
Match: XP_038905300.1 (uncharacterized protein LOC120091370 [Benincasa hispida])

HSP 1 Score: 133 bits (335), Expect = 5.73e-39
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCSTR 66
          +LCSTR
Sbjct: 61 ILCSTR 66

[Close]

BLAST of Csor.00g186870 vs. NCBI nr
Match: KAE8650936.1 (hypothetical protein Csa_001741 [Cucumis sativus])

HSP 1 Score: 132 bits (331), Expect = 2.34e-38
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCST 65
          +LCST
Sbjct: 61 ILCST 65

[Close]

BLAST of Csor.00g186870 vs. ExPASy TrEMBL
Match: A0A6J1J7E0 (uncharacterized protein LOC111481923 OS=Cucurbita maxima OX=3661 GN=LOC111481923 PE=4 SV=1)

HSP 1 Score: 136 bits (343), Expect = 1.67e-40
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60

Query: 61 VLCSTR 66
          VLCSTR
Sbjct: 61 VLCSTR 66

[Close]

BLAST of Csor.00g186870 vs. ExPASy TrEMBL
Match: A0A6J1F484 (uncharacterized protein LOC111441965 OS=Cucurbita moschata OX=3662 GN=LOC111441965 PE=4 SV=1)

HSP 1 Score: 136 bits (343), Expect = 1.67e-40
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60

Query: 61 VLCSTR 66
          VLCSTR
Sbjct: 61 VLCSTR 66

[Close]

BLAST of Csor.00g186870 vs. ExPASy TrEMBL
Match: A0A0A0LD25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697900 PE=4 SV=1)

HSP 1 Score: 134 bits (336), Expect = 1.95e-39
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCSTR 66
          +LCSTR
Sbjct: 61 ILCSTR 66

[Close]

BLAST of Csor.00g186870 vs. ExPASy TrEMBL
Match: A0A1S4E3E9 (uncharacterized protein LOC107991865 OS=Cucumis melo OX=3656 GN=LOC107991865 PE=4 SV=1)

HSP 1 Score: 134 bits (336), Expect = 1.95e-39
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCSTR 66
          +LCSTR
Sbjct: 61 ILCSTR 66

[Close]

BLAST of Csor.00g186870 vs. ExPASy TrEMBL
Match: A0A6J1DEC8 (uncharacterized protein LOC111020277 OS=Momordica charantia OX=3673 GN=LOC111020277 PE=4 SV=1)

HSP 1 Score: 130 bits (328), Expect = 3.25e-38
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQFFFT+AFSAVPLTLYVPPLRS NLFVETMEEILRESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTLAFSAVPLTLYVPPLRSLNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCSTR 66
          VLCSTR
Sbjct: 61 VLCSTR 66

[Close]

BLAST of Csor.00g186870 vs. TAIR 10
Match: AT3G52105.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 86.3 bits (212), Expect = 1.2e-17
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQ FFT+AFSA PLTLY+PP+R   +FVETMEE+  E R Y+ R++PRAR  W R+LDC
Sbjct: 1  MLQLFFTIAFSAAPLTLYIPPIRCLTVFVETMEEMGMEGRVYSWRLFPRARIAWSRLLDC 60

Query: 61 VLCSTR 67
             S+R
Sbjct: 61 FFSSSR 66

The following BLAST results are available for this feature:

BLAST of Csor.00g186870 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g186870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581581.1	1.90e-53	100.00	hypothetical protein SDJN03_21583, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022934952.1	3.44e-40	100.00	uncharacterized protein LOC111441965 [Cucurbita moschata] >XP_022983303.1 unchar...	[more]
XP_011651782.1	4.03e-39	96.97	uncharacterized protein LOC105434940 [Cucumis sativus] >XP_016902752.1 PREDICTED...	[more]
XP_038905300.1	5.73e-39	95.45	uncharacterized protein LOC120091370 [Benincasa hispida]	[more]
KAE8650936.1	2.34e-38	96.92	hypothetical protein Csa_001741 [Cucumis sativus]	[more]

BLAST of Csor.00g186870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J7E0	1.67e-40	100.00	uncharacterized protein LOC111481923 OS=Cucurbita maxima OX=3661 GN=LOC111481923...	[more]
A0A6J1F484	1.67e-40	100.00	uncharacterized protein LOC111441965 OS=Cucurbita moschata OX=3662 GN=LOC1114419...	[more]
A0A0A0LD25	1.95e-39	96.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697900 PE=4 SV=1	[more]
A0A1S4E3E9	1.95e-39	96.97	uncharacterized protein LOC107991865 OS=Cucumis melo OX=3656 GN=LOC107991865 PE=...	[more]
A0A6J1DEC8	3.25e-38	95.45	uncharacterized protein LOC111020277 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]

BLAST of Csor.00g186870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52105.1	1.2e-17	60.61	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36616	BNAC07G32700D PROTEIN	coord: 1..66
None	No IPR available	PANTHER	PTHR36616:SF4	BNAC07G32700D PROTEIN	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g186870.m01	Csor.00g186870.m01	mRNA