Csor.00g182290 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g182290
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	60S ribosomal protein L13a, putative
Location	Csor_Chr14: 15627113 .. 15628801 (+)
RNA-Seq Expression	Csor.00g182290
Synteny	Csor.00g182290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTCGGGTTCTGGAATCTGCGCGAAGCGCGTCGTCATTGACGCAAGGCACCACATGCTCGGGAGGCTGGCTTCGATTGTGGCCAAGGAGCTTCTCAATGGCCAGAAGGTGGTCCTCGTCCGATGTGAAGAAATTTGCATCTCTGGAGGATTGGTTCGCCAGAAAATGAAGTACATGAGGTTCTTGAGGAAGCGTATGAATACCAAGCCCTCTCATGGCCCTATTCACTTCCGTGCTCCTGCCAAGATCATATGGCGAACAATCCGTGGGTAATGTCTGTTGTCGCATTGTTTTTTCCTGTTTGTTCTTGGTTAGATTGAGATGAAAATGTGTGTTCAATTGTCTTTGTATTGCTTGAATGTGATTTACTATGATTTATTTAGGTATGGAATCGGTCATGAGAGCAGGAACATACATTTATGTTTTCTTAGTGGTATTTGAGTTATTTGTTTAGTTTATACCTGGGTAGGTTAGGAACAAAATTGTTAGTGAAAGGCTGTATTATGATGTAGAGCGATTGTCTTTGTATTTGTGGCTTACTAATGTTTGGTTGGCAAACTGTTAGGCTTATGGATGCCATATACAAACTGTTAACTCATATGCCATATTTCCATTTCCTCGAAGGAACTAGTGACTTTAACTTCTTTGCTTTAGGTTAAGTGTTTGGATTCGTCCTTTATCTGTTTTCAGCCCAAATTGTATGTGCTAGGTAGGTTGGTAGCTTATATGGTTACTGTTTGTGTGTTTCTTAGGATGATCCCACACAAGACAAAGCGTGGAGCTGCAGCTCTTGCTCGTTTGAAGGCATACGAAGGTGTTCCTCCTCCCTATGATAAGATGAAGAGGATGGTCATCCCCGACGCTCTCAAGTGAGTTTGAGGATGCTCTTTTATGATGCCAGTTGTCAATTATGAATTCCGTTTGTTTACTTATTAATCTTAGCTATGAATTCAAATTTTTAGATGCAGAAGTAATAAATGAAACAATGCAAGTAAACCCTTTTATGTACTGGTTTTCTGTATTGATGTGTCTCTATATTGCATATTAGGGTTTTGAGACTTCAAGCTGGACACAAATACTGCTTGTTAGGCAGACTCTCATCAGAAGTGGGATGGAATCACTATGACACTATCAAGGTACGGATTAAGATTGATGAATCCATACCATTCCATATTGTTTCTATATTCTATTTTCCAACCTATCAATTCAACATTTTACGATTTTTTTCATGCCCCCAATCTTACCTGATTTATCATTGGAAAAATTCCTTCATTCATCTTTGTCATTGAAATTGGATTTATGAATGATATGGGGTCCATTAAGTATAGTAATCTATCATCTAATGACCTGTTAAATGTTTGAATGGAAATGTTCTATTTAATAGAAAATTTTCCGTTTTCTTCAAACCTCCCCCATTTCCAACTATCGCAATTGGTCATGTTCCATTGATTTTTCATGTTGATGAAGTGAATAGATGATGCTTTTGCCTATTTTAAACCATTCTATGTCGAGTAACGCTGATTTCTTTTTTCGTTCCCTCAGGAGCTTGAAAGGAAGAGGAAGGAGAGGGCTCAAGCAGCATACGAGAAGAAGAAGCAGTTGACTAAGTTGAGGGTCAAAGCCGAGAAGGTCGCAGACGAGAAGCTTGGTCCCCAGTTGCAAGTAATAGCCCCAATTAAATACTAG

mRNA sequence

ATGGTGTCGGGTTCTGGAATCTGCGCGAAGCGCGTCGTCATTGACGCAAGGCACCACATGCTCGGGAGGCTGGCTTCGATTGTGGCCAAGGAGCTTCTCAATGGCCAGAAGGTGGTCCTCGTCCGATGTGAAGAAATTTGCATCTCTGGAGGATTGGTTCGCCAGAAAATGAAGTACATGAGGTTCTTGAGGAAGCGTATGAATACCAAGCCCTCTCATGGCCCTATTCACTTCCGTGCTCCTGCCAAGATCATATGGCGAACAATCCGTGGGATGATCCCACACAAGACAAAGCGTGGAGCTGCAGCTCTTGCTCGTTTGAAGGCATACGAAGGTGTTCCTCCTCCCTATGATAAGATGAAGAGGATGGTCATCCCCGACGCTCTCAAGGTTTTGAGACTTCAAGCTGGACACAAATACTGCTTGTTAGGCAGACTCTCATCAGAAGTGGGATGGAATCACTATGACACTATCAAGGAGCTTGAAAGGAAGAGGAAGGAGAGGGCTCAAGCAGCATACGAGAAGAAGAAGCAGTTGACTAAGTTGAGGGTCAAAGCCGAGAAGGTCGCAGACGAGAAGCTTGGTCCCCAGTTGCAAGTAATAGCCCCAATTAAATACTAG

Coding sequence (CDS)

ATGGTGTCGGGTTCTGGAATCTGCGCGAAGCGCGTCGTCATTGACGCAAGGCACCACATGCTCGGGAGGCTGGCTTCGATTGTGGCCAAGGAGCTTCTCAATGGCCAGAAGGTGGTCCTCGTCCGATGTGAAGAAATTTGCATCTCTGGAGGATTGGTTCGCCAGAAAATGAAGTACATGAGGTTCTTGAGGAAGCGTATGAATACCAAGCCCTCTCATGGCCCTATTCACTTCCGTGCTCCTGCCAAGATCATATGGCGAACAATCCGTGGGATGATCCCACACAAGACAAAGCGTGGAGCTGCAGCTCTTGCTCGTTTGAAGGCATACGAAGGTGTTCCTCCTCCCTATGATAAGATGAAGAGGATGGTCATCCCCGACGCTCTCAAGGTTTTGAGACTTCAAGCTGGACACAAATACTGCTTGTTAGGCAGACTCTCATCAGAAGTGGGATGGAATCACTATGACACTATCAAGGAGCTTGAAAGGAAGAGGAAGGAGAGGGCTCAAGCAGCATACGAGAAGAAGAAGCAGTTGACTAAGTTGAGGGTCAAAGCCGAGAAGGTCGCAGACGAGAAGCTTGGTCCCCAGTTGCAAGTAATAGCCCCAATTAAATACTAG

Protein sequence

MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLTKLRVKAEKVADEKLGPQLQVIAPIKY

Homology

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BLAST of Csor.00g182290 vs. ExPASy Swiss-Prot
Match: Q9FKC0 (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana OX=3702 GN=RPL13AD PE=2 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 6.3e-103
Identity = 183/206 (88.83%), Postives = 195/206 (94.66%), Query Frame = 0


Query: 1   MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM 60
           MVSGSGIC+KRVV+DARHHMLGRLASI AKELLNGQKVV+VRCEEIC+SGGLVRQKMKYM
Sbjct: 1   MVSGSGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120
           RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKTKRGAAALARLK YEGVP PYDK+
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKI 120

Query: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180
           KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELE KRKERA   YE+KKQL 
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYERKKQLN 180

Query: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 207
           KLRVKAEKVA+EKLG QL ++AP+KY
Sbjct: 181 KLRVKAEKVAEEKLGAQLDILAPVKY 206

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BLAST of Csor.00g182290 vs. ExPASy Swiss-Prot
Match: Q9LRX8 (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL13AB PE=2 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 3.1e-102
Identity = 183/206 (88.83%), Postives = 196/206 (95.15%), Query Frame = 0


Query: 1   MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM 60
           MVSGSGIC+KRVV+DARHHM GRLASI+AKELLNGQ VV+VRCEEIC+SGGLVRQKMKYM
Sbjct: 1   MVSGSGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120
           RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKTKRGAAALARLK +EGVPPPYDK+
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKV 120

Query: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180
           KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELE KRKER+QA YE+KKQLT
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQLT 180

Query: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 207
           KLR KAEKVA+EKLG QL V+A IKY
Sbjct: 181 KLRAKAEKVAEEKLGSQLDVLASIKY 206

[Close]

BLAST of Csor.00g182290 vs. ExPASy Swiss-Prot
Match: Q9SFU1 (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13AA PE=2 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 4.1e-102
Identity = 180/206 (87.38%), Postives = 196/206 (95.15%), Query Frame = 0


Query: 1   MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM 60
           MVSGSGICAKRVV+DARHHMLGRLAS+VAK+LLNGQ +V+VRCEEIC+SGGLVRQKMKYM
Sbjct: 1   MVSGSGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120
           RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKTKRGA ALARLK +EGVP PYDK+
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKI 120

Query: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180
           KRMV+PDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELE KRKERAQA YE+KKQL+
Sbjct: 121 KRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLS 180

Query: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 207
           KLR KAEKVA+EKLG QL V+AP+KY
Sbjct: 181 KLRAKAEKVAEEKLGSQLDVLAPVKY 206

[Close]

BLAST of Csor.00g182290 vs. ExPASy Swiss-Prot
Match: Q9SVR0 (60S ribosomal protein L13a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13AC PE=2 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 7.7e-101
Identity = 178/206 (86.41%), Postives = 194/206 (94.17%), Query Frame = 0


Query: 1   MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM 60
           MVSGSGICAKRVV+D RHHMLGRLAS  AKELLNGQ+VV+VRCEEIC+SGGLVRQKMKYM
Sbjct: 1   MVSGSGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120
           RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKTKRGAAALARLK +EG+PPPYDK+
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKI 120

Query: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180
           KRMVIPDALKVLRLQ+GHKYCLLGRLSSEVGWNHYDTIKELE KRKER+Q  YE+KKQL 
Sbjct: 121 KRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMYERKKQLN 180

Query: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 207
           KLR KAEKVA+E+LG QL V+AP+KY
Sbjct: 181 KLRTKAEKVAEERLGSQLDVLAPVKY 206

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BLAST of Csor.00g182290 vs. ExPASy Swiss-Prot
Match: O49885 (60S ribosomal protein L13a OS=Lupinus luteus OX=3873 GN=RPL13A PE=2 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 3.7e-95
Identity = 172/206 (83.50%), Postives = 190/206 (92.23%), Query Frame = 0


Query: 1   MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM 60
           MVSGSGI AKRVV+DARHHMLGRLASIVAKELLNGQKVV+VR EEICISGGLVRQKMKY+
Sbjct: 1   MVSGSGIAAKRVVVDARHHMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYL 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120
           RFLRKRMNTKPSHGPIH  AP+KI WRT+RGMIPHKTKRG  ALARLK YEG+PPP+DK 
Sbjct: 61  RFLRKRMNTKPSHGPIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQ 120

Query: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180
           KR+V+PDALKVLRLQ GHKYCLLG+LSSEVGWN+YDTIKELE+KRKER+Q  YE+KKQL 
Sbjct: 121 KRLVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKRKERSQVVYERKKQLN 180

Query: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 207
           KLRVKAE+VA EKLG QL ++AP+KY
Sbjct: 181 KLRVKAEQVAQEKLGSQLDILAPVKY 205

[Close]

BLAST of Csor.00g182290 vs. NCBI nr
Match: XP_022924796.1 (60S ribosomal protein L13a-4-like isoform X1 [Cucurbita moschata] >XP_023529032.1 60S ribosomal protein L13a-4-like [Cucurbita pepo subsp. pepo] >KAG6582470.1 60S ribosomal protein L13a-4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018859.1 60S ribosomal protein L13a-4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 407 bits (1047), Expect = 2.59e-143
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM 60
           MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM
Sbjct: 1   MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120
           RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120

Query: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180
           KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180

Query: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 206
           KLRVKAEKVADEKLGPQLQVIAPIKY
Sbjct: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 206

[Close]

BLAST of Csor.00g182290 vs. NCBI nr
Match: XP_022147118.1 (60S ribosomal protein L13a-4-like [Momordica charantia])

HSP 1 Score: 404 bits (1039), Expect = 4.30e-142
Identity = 202/206 (98.06%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM 60
           MVSGSGICAKRVV+DARHHMLGRLASIVAKELLNGQKVV+VRCEEICISGGLVRQKMKYM
Sbjct: 1   MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVIVRCEEICISGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120
           RFLRKRMNTKPSHGPIHFRAPAKI+WRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120

Query: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180
           KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180

Query: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 206
           KLRVKAEKVADEKLGPQL+VIAPIKY
Sbjct: 181 KLRVKAEKVADEKLGPQLEVIAPIKY 206

[Close]

BLAST of Csor.00g182290 vs. NCBI nr
Match: XP_022980414.1 (60S ribosomal protein L13a-4-like [Cucurbita maxima])

HSP 1 Score: 404 bits (1037), Expect = 8.69e-142
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM 60
           MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM
Sbjct: 1   MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120
           RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120

Query: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180
           KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180

Query: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 206
           KLRVKAEKVADEKLG QLQVIAPIKY
Sbjct: 181 KLRVKAEKVADEKLGLQLQVIAPIKY 206

[Close]

BLAST of Csor.00g182290 vs. NCBI nr
Match: XP_004133995.1 (60S ribosomal protein L13a-2 [Cucumis sativus] >XP_008438365.1 PREDICTED: 60S ribosomal protein L13a-2-like [Cucumis melo] >KAA0049152.1 60S ribosomal protein L13a-4 [Cucumis melo var. makuwa] >KGN56740.1 hypothetical protein Csa_009815 [Cucumis sativus] >TYK17407.1 60S ribosomal protein L13a-4 [Cucumis melo var. makuwa])

HSP 1 Score: 402 bits (1034), Expect = 2.49e-141
Identity = 200/206 (97.09%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM 60
           MVSGSGICAKRVV+DARHHMLGRL+SI+AKELLNGQKVV+VRCEEICISGGLVRQKMKYM
Sbjct: 1   MVSGSGICAKRVVVDARHHMLGRLSSIIAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120
           RFLRKRMNTKPSHGPIHFRAPAKI+WRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120

Query: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180
           KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKER+QAAYEKKKQLT
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERSQAAYEKKKQLT 180

Query: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 206
           KLRVKAEKVADEKLGPQLQVIAPIKY
Sbjct: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 206

[Close]

BLAST of Csor.00g182290 vs. NCBI nr
Match: XP_023521847.1 (60S ribosomal protein L13a-4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 400 bits (1028), Expect = 2.05e-140
Identity = 199/206 (96.60%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM 60
           MVSGSGICAKRVV+DARHHMLGRL+SI+AKELLNGQKVV+VRCEEICISGGLVRQKMKYM
Sbjct: 1   MVSGSGICAKRVVVDARHHMLGRLSSIIAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120
           RFLRKRMNTKPSHGPIHFRAPAKI+WRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120

Query: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180
           KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQA YEKKKQL 
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAVYEKKKQLN 180

Query: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 206
           KLRVKAEKVADEKLGPQLQVIAPIKY
Sbjct: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 206

[Close]

BLAST of Csor.00g182290 vs. ExPASy TrEMBL
Match: A0A6J1EAG0 (60S ribosomal protein L13a-4-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111432187 PE=3 SV=1)

HSP 1 Score: 407 bits (1047), Expect = 1.26e-143
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM 60
           MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM
Sbjct: 1   MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120
           RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120

Query: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180
           KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180

Query: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 206
           KLRVKAEKVADEKLGPQLQVIAPIKY
Sbjct: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 206

[Close]

BLAST of Csor.00g182290 vs. ExPASy TrEMBL
Match: A0A6J1D0E7 (60S ribosomal protein L13a-4-like OS=Momordica charantia OX=3673 GN=LOC111016129 PE=3 SV=1)

HSP 1 Score: 404 bits (1039), Expect = 2.08e-142
Identity = 202/206 (98.06%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM 60
           MVSGSGICAKRVV+DARHHMLGRLASIVAKELLNGQKVV+VRCEEICISGGLVRQKMKYM
Sbjct: 1   MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVIVRCEEICISGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120
           RFLRKRMNTKPSHGPIHFRAPAKI+WRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120

Query: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180
           KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180

Query: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 206
           KLRVKAEKVADEKLGPQL+VIAPIKY
Sbjct: 181 KLRVKAEKVADEKLGPQLEVIAPIKY 206

[Close]

BLAST of Csor.00g182290 vs. ExPASy TrEMBL
Match: A0A6J1IZ77 (60S ribosomal protein L13a-4-like OS=Cucurbita maxima OX=3661 GN=LOC111479788 PE=3 SV=1)

HSP 1 Score: 404 bits (1037), Expect = 4.21e-142
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM 60
           MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM
Sbjct: 1   MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120
           RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120

Query: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180
           KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180

Query: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 206
           KLRVKAEKVADEKLG QLQVIAPIKY
Sbjct: 181 KLRVKAEKVADEKLGLQLQVIAPIKY 206

[Close]

BLAST of Csor.00g182290 vs. ExPASy TrEMBL
Match: A0A5A7U034 (60S ribosomal protein L13a-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G002690 PE=3 SV=1)

HSP 1 Score: 402 bits (1034), Expect = 1.21e-141
Identity = 200/206 (97.09%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM 60
           MVSGSGICAKRVV+DARHHMLGRL+SI+AKELLNGQKVV+VRCEEICISGGLVRQKMKYM
Sbjct: 1   MVSGSGICAKRVVVDARHHMLGRLSSIIAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120
           RFLRKRMNTKPSHGPIHFRAPAKI+WRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120

Query: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180
           KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKER+QAAYEKKKQLT
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERSQAAYEKKKQLT 180

Query: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 206
           KLRVKAEKVADEKLGPQLQVIAPIKY
Sbjct: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 206

[Close]

BLAST of Csor.00g182290 vs. ExPASy TrEMBL
Match: A0A0A0L439 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G131930 PE=3 SV=1)

HSP 1 Score: 402 bits (1034), Expect = 1.21e-141
Identity = 200/206 (97.09%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM 60
           MVSGSGICAKRVV+DARHHMLGRL+SI+AKELLNGQKVV+VRCEEICISGGLVRQKMKYM
Sbjct: 1   MVSGSGICAKRVVVDARHHMLGRLSSIIAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120
           RFLRKRMNTKPSHGPIHFRAPAKI+WRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120

Query: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180
           KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKER+QAAYEKKKQLT
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERSQAAYEKKKQLT 180

Query: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 206
           KLRVKAEKVADEKLGPQLQVIAPIKY
Sbjct: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 206

[Close]

BLAST of Csor.00g182290 vs. TAIR 10
Match: AT5G48760.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 374.8 bits (961), Expect = 4.5e-104
Identity = 183/206 (88.83%), Postives = 195/206 (94.66%), Query Frame = 0


Query: 1   MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM 60
           MVSGSGIC+KRVV+DARHHMLGRLASI AKELLNGQKVV+VRCEEIC+SGGLVRQKMKYM
Sbjct: 1   MVSGSGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120
           RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKTKRGAAALARLK YEGVP PYDK+
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKI 120

Query: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180
           KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELE KRKERA   YE+KKQL 
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYERKKQLN 180

Query: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 207
           KLRVKAEKVA+EKLG QL ++AP+KY
Sbjct: 181 KLRVKAEKVAEEKLGAQLDILAPVKY 206

[Close]

BLAST of Csor.00g182290 vs. TAIR 10
Match: AT5G48760.2 (Ribosomal protein L13 family protein )

HSP 1 Score: 374.8 bits (961), Expect = 4.5e-104
Identity = 183/206 (88.83%), Postives = 195/206 (94.66%), Query Frame = 0


Query: 1   MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM 60
           MVSGSGIC+KRVV+DARHHMLGRLASI AKELLNGQKVV+VRCEEIC+SGGLVRQKMKYM
Sbjct: 1   MVSGSGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120
           RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKTKRGAAALARLK YEGVP PYDK+
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKI 120

Query: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180
           KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELE KRKERA   YE+KKQL 
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYERKKQLN 180

Query: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 207
           KLRVKAEKVA+EKLG QL ++AP+KY
Sbjct: 181 KLRVKAEKVAEEKLGAQLDILAPVKY 206

[Close]

BLAST of Csor.00g182290 vs. TAIR 10
Match: AT3G24830.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 372.5 bits (955), Expect = 2.2e-103
Identity = 183/206 (88.83%), Postives = 196/206 (95.15%), Query Frame = 0


Query: 1   MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM 60
           MVSGSGIC+KRVV+DARHHM GRLASI+AKELLNGQ VV+VRCEEIC+SGGLVRQKMKYM
Sbjct: 1   MVSGSGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120
           RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKTKRGAAALARLK +EGVPPPYDK+
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKV 120

Query: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180
           KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELE KRKER+QA YE+KKQLT
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQLT 180

Query: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 207
           KLR KAEKVA+EKLG QL V+A IKY
Sbjct: 181 KLRAKAEKVAEEKLGSQLDVLASIKY 206

[Close]

BLAST of Csor.00g182290 vs. TAIR 10
Match: AT3G07110.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 372.1 bits (954), Expect = 2.9e-103
Identity = 180/206 (87.38%), Postives = 196/206 (95.15%), Query Frame = 0


Query: 1   MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM 60
           MVSGSGICAKRVV+DARHHMLGRLAS+VAK+LLNGQ +V+VRCEEIC+SGGLVRQKMKYM
Sbjct: 1   MVSGSGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120
           RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKTKRGA ALARLK +EGVP PYDK+
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKI 120

Query: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180
           KRMV+PDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELE KRKERAQA YE+KKQL+
Sbjct: 121 KRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLS 180

Query: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 207
           KLR KAEKVA+EKLG QL V+AP+KY
Sbjct: 181 KLRAKAEKVAEEKLGSQLDVLAPVKY 206

[Close]

BLAST of Csor.00g182290 vs. TAIR 10
Match: AT4G13170.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 367.9 bits (943), Expect = 5.5e-102
Identity = 178/206 (86.41%), Postives = 194/206 (94.17%), Query Frame = 0


Query: 1   MVSGSGICAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYM 60
           MVSGSGICAKRVV+D RHHMLGRLAS  AKELLNGQ+VV+VRCEEIC+SGGLVRQKMKYM
Sbjct: 1   MVSGSGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKIIWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120
           RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKTKRGAAALARLK +EG+PPPYDK+
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKI 120

Query: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERAQAAYEKKKQLT 180
           KRMVIPDALKVLRLQ+GHKYCLLGRLSSEVGWNHYDTIKELE KRKER+Q  YE+KKQL 
Sbjct: 121 KRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMYERKKQLN 180

Query: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 207
           KLR KAEKVA+E+LG QL V+AP+KY
Sbjct: 181 KLRTKAEKVAEERLGSQLDVLAPVKY 206

The following BLAST results are available for this feature:

BLAST of Csor.00g182290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKC0	6.3e-103	88.83	60S ribosomal protein L13a-4 OS=Arabidopsis thaliana OX=3702 GN=RPL13AD PE=2 SV=...	[more]
Q9LRX8	3.1e-102	88.83	60S ribosomal protein L13a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL13AB PE=2 SV=...	[more]
Q9SFU1	4.1e-102	87.38	60S ribosomal protein L13a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13AA PE=2 SV=...	[more]
Q9SVR0	7.7e-101	86.41	60S ribosomal protein L13a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13AC PE=2 SV=...	[more]
O49885	3.7e-95	83.50	60S ribosomal protein L13a OS=Lupinus luteus OX=3873 GN=RPL13A PE=2 SV=1	[more]

BLAST of Csor.00g182290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924796.1	2.59e-143	100.00	60S ribosomal protein L13a-4-like isoform X1 [Cucurbita moschata] >XP_023529032....	[more]
XP_022147118.1	4.30e-142	98.06	60S ribosomal protein L13a-4-like [Momordica charantia]	[more]
XP_022980414.1	8.69e-142	99.51	60S ribosomal protein L13a-4-like [Cucurbita maxima]	[more]
XP_004133995.1	2.49e-141	97.09	60S ribosomal protein L13a-2 [Cucumis sativus] >XP_008438365.1 PREDICTED: 60S ri...	[more]
XP_023521847.1	2.05e-140	96.60	60S ribosomal protein L13a-4-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g182290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EAG0	1.26e-143	100.00	60S ribosomal protein L13a-4-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1D0E7	2.08e-142	98.06	60S ribosomal protein L13a-4-like OS=Momordica charantia OX=3673 GN=LOC111016129...	[more]
A0A6J1IZ77	4.21e-142	99.51	60S ribosomal protein L13a-4-like OS=Cucurbita maxima OX=3661 GN=LOC111479788 PE...	[more]
A0A5A7U034	1.21e-141	97.09	60S ribosomal protein L13a-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A0A0L439	1.21e-141	97.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G131930 PE=3 SV=1	[more]

BLAST of Csor.00g182290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48760.1	4.5e-104	88.83	Ribosomal protein L13 family protein	[more]
AT5G48760.2	4.5e-104	88.83	Ribosomal protein L13 family protein	[more]
AT3G24830.1	2.2e-103	88.83	Ribosomal protein L13 family protein	[more]
AT3G07110.1	2.9e-103	87.38	Ribosomal protein L13 family protein	[more]
AT4G13170.1	5.5e-102	86.41	Ribosomal protein L13 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 159..179
None	No IPR available	GENE3D	6.10.250.3250		coord: 156..206 e-value: 7.9E-14 score: 53.4
None	No IPR available	PANTHER	PTHR11545:SF18	60S RIBOSOMAL PROTEIN L13A-4	coord: 1..206
IPR005822	Ribosomal protein L13	PFAM	PF00572	Ribosomal_L13	coord: 10..115 e-value: 2.2E-26 score: 92.3
IPR005822	Ribosomal protein L13	PANTHER	PTHR11545	RIBOSOMAL PROTEIN L13	coord: 1..206
IPR005822	Ribosomal protein L13	HAMAP	MF_01366	Ribosomal_L13	coord: 11..135 score: 19.210234
IPR005822	Ribosomal protein L13	CDD	cd00392	Ribosomal_L13	coord: 12..113 e-value: 7.34309E-40 score: 130.317
IPR005755	Ribosomal protein L13, eukaryotic/archaeal	TIGRFAM	TIGR01077	TIGR01077	coord: 12..153 e-value: 5.7E-53 score: 177.0
IPR036899	Ribosomal protein L13 superfamily	GENE3D	3.90.1180.10	Ribosomal protein L13	coord: 8..154 e-value: 1.2E-60 score: 205.7
IPR036899	Ribosomal protein L13 superfamily	SUPERFAMILY	52161	Ribosomal protein L13	coord: 12..154
IPR023563	Ribosomal protein L13, conserved site	PROSITE	PS00783	RIBOSOMAL_L13	coord: 89..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g182290.m01	Csor.00g182290.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017148	negative regulation of translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome