Csor.00g178200 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCTCTCTTCAACCTCCCGATGTCCTCCGTTTAGCTGAAACAGCTCGAATTTCTCTCACTCCCGGTGAGGTATGCGAGGCTCTCCCCTCGTCCATCTTTACTTCTGTTTATTCAATTTTTTGAATCGAGTAACATTTGCTTCTTACTTTCGGGTTTGTGTTGTCTTGATTGTGTAATTCAGGTTGAAGAATTGGCGCCTAAAATTGGACAAGTTGTTGACTGGTAAGTTCATCTTTCCCTCGCCTATGCATACATACACAAACTCTCATAAACTAGTAGATCTTGAAATACAATGGTATCTTGGTCAGGTCTCTATGTAAATTATGATGGGATAACTGCATGTTAGGTCCTAAACATTGAAGGGATCTTCACCTACAGATTGTAGAATGTTGTTCTCCATAATTTGTTTGGTTTAATTGGTGCTCTAATATCATTTATAACCGTCCAAGCCTATCGTTAACCGATATTGTCCGAAAGAGCTTCTCCTCAACGTTTTAAAACGTGTATGTGAGGGAGAGGTTTCTACACTCTTATAAAGAATGTTTTGTTTCCCTCTCCAATCAATATGGGATCTCACAATCCATCCTACTTAGGGGATAGCGTCCTTACTAGCACACCGCCCGGTACCATTTGTAACAACCCAAGCTCACTGCTAGCCGATATTGTCCTCCCTTACAGGCTTCCTTCTCAAGATTTTTAAAACGCGTCTGTTAGGGAGACATTTTCACACCCTTATAAGGGAGTACTTCGTTCCCCTCTCCAACCGATGCGGGATCTCACATTACTTATTCGAACGTGACTTTTAGAGAGATGGTTCCCATGACAGCATAGGAACAAAAGATGGTTCAATGCGGTGGGAGGCTTCATTGGGAAGCACTTGGACAAATCAAAAGCGTCTACAAGAGAATTCCATATCTTTTTTTTTTTTTTGGAGAAAGGACAATGTAGGGAGATATGACAACAATTTTCTTCATCTTTCTTACTAAGATGCACTAGCTTGAGAGGAGAGAACGTGGGGGTCCTTTTTTGAACCTTTGCAGAATGCAAGCTTCCATGAGCTGGGTTCAATCCAAAAATCTCACCTTTTCAGACTCCTCCTCCCTCTAAATAAATAGCCTTAATGAACGGATTTGAAGGGACACCGCCACATCTCCTTTATTATTAAGGGAAATAGGAAGGTTGGAAAAGGAGGCAATTAGAATCCAAACTCCAACAGTGAACAGCCTTTGCTATGGAATTCAAACATTTTTGAGAAGAATGAATGATCTGTTCCATTAATTAGCCTTTTGAAGTTGAGGTTCCAACCCTAGTCACGTTGTGGGATTTTACATCGATTGGAGAGGGGAATGAAGCTTTCTTTACAAGGTGTGGAAACCTCTCCCTAGCAGACATATTTTAAAACTGTGAGCTGGATGGCGATATGTAAGGGTTGAAGTAGACAATATCTGCTAGCAGTGGTGGTATCAGAGCTAGGCACTGAATGGTGTGCCAGCGAGGACGCTGGACCCCGAAGGGGATTGTGAGATCCCACATCGGTTGGAGAGAGGAACGAAACATTATTTACAAGAGTGTGAAAACCTCTCTCTAGCATACGCATTTTAAAACCGTGAGGCTGATGGTAGTACGTAACCGGTCGAAACGGATAATATCTGCTAGGAAATTTTCGAAAATTTCTCCTTTAGAGGTCGTGAGGTGTCCATTGATCTGTCCCAAAAGAAACAGGGACGCCATTATCCACCTTAACATTCAAAACCACCTTCATCCTCTGACTACCTTTAGCAATGAAGTTCCATGGACTTTTGCCGTTGTAGCTTCCATTTTTCCTATGAAATTGTTCATTCTGTCGACTCAATTCCCCGGCTGTTGTACCCTTTGGTTTCCAATTACTTTAATATGATAACTTTATGTTTCAGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATGGAACCTTCCATTAGAGCAGGTGATCCTTAATCATTTTGCAACTTGTTTGTTGTTCTTCTTCCAGCATACCATAATACCTGTAACAGTCTGAGCCATTGCTAGATATTATCCGTTTTCGCCATTACGTATCACCGTCAGTCTCATATTTTAAAACACGTCTACTAGGGAGAGGCTTCTACACCCTTATAAATAATGTTTTGTTCCCCTATCCAATCGACGTAGGATCTCACAATCCACCCTCTTGGAAACCTAGCGTCCTTGCAGGCACACTACTCGGTGCCTGACTCTAATACCATTTGACCATTTTTTTTCACAACCATCTCGAGCATAATTTCCTTCTTCATCGACTTGAGTCTCAGTCTCCTCGGCCTACAATAAAATCTCATAATCTTATTATTATGCATGTATTTTGAAGTTAGGAAGGAAAACAAGGGTCATTAATACCTCGAAAGCTCTGGCGTTACAATACCTTTGATTGTTTCTCACGGTTAAGTGTTGGCTTCAAATCATACAAGTCAATCGATTGTAGTTTTTGCTGCACTTTCAAGTTATTTTTTGTGAACAGGACAGGCAAACAATTGTAGTGCAGCAAAAACTAGTACTAATTTTGCAACTATTTACAGATACTGGAGGTGTCAATCAGCGGAATGACGCTCCTGAAACATTTGAAAACAGGTAACCTGGTTATTTTTCAACTTGAGCTATCCCAACATTTGGCACCAAGCTTTGGCCATAACTTCTACTATCTTTTTGACACCAGAGAGGCCATGATTCGCGCAGTTCCAGCCTTTGATGAGCCGTATATCAAAGTTCCTAAAGTTCTCGATAAGGAGTAG ATGGCCTCTCTTCAACCTCCCGATGTCCTCCGTTTAGCTGAAACAGCTCGAATTTCTCTCACTCCCGGTGAGGTTGAAGAATTGGCGCCTAAAATTGGACAAGTTGTTGACTGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATGGAACCTTCCATTAGAGCAGATACTGGAGGTGTCAATCAGCGGAATGACGCTCCTGAAACATTTGAAAACAGAGAGGCCATGATTCGCGCAGTTCCAGCCTTTGATGAGCCGTATATCAAAGTTCCTAAAGTTCTCGATAAGGAGTAG ATGGCCTCTCTTCAACCTCCCGATGTCCTCCGTTTAGCTGAAACAGCTCGAATTTCTCTCACTCCCGGTGAGGTTGAAGAATTGGCGCCTAAAATTGGACAAGTTGTTGACTGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATGGAACCTTCCATTAGAGCAGATACTGGAGGTGTCAATCAGCGGAATGACGCTCCTGAAACATTTGAAAACAGAGAGGCCATGATTCGCGCAGTTCCAGCCTTTGATGAGCCGTATATCAAAGTTCCTAAAGTTCTCGATAAGGAGTAG MASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADTGGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLDKE Homology
BLAST of Csor.00g178200 vs. ExPASy Swiss-Prot
Match: D7STK2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vitis vinifera OX=29760 GN=GATC PE=3 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 9.2e-36 Identity = 72/97 (74.23%), Postives = 87/97 (89.69%), Query Frame = 0
BLAST of Csor.00g178200 vs. ExPASy Swiss-Prot
Match: B9RRX2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ricinus communis OX=3988 GN=GATC PE=3 SV=1) HSP 1 Score: 143.3 bits (360), Expect = 1.5e-33 Identity = 69/97 (71.13%), Postives = 82/97 (84.54%), Query Frame = 0
BLAST of Csor.00g178200 vs. ExPASy Swiss-Prot
Match: B9INH0 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Populus trichocarpa OX=3694 GN=GATC PE=3 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 4.0e-31 Identity = 68/97 (70.10%), Postives = 81/97 (83.51%), Query Frame = 0
BLAST of Csor.00g178200 vs. ExPASy Swiss-Prot
Match: A2XK57 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=GATC PE=3 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 5.8e-30 Identity = 64/97 (65.98%), Postives = 79/97 (81.44%), Query Frame = 0
BLAST of Csor.00g178200 vs. ExPASy Swiss-Prot
Match: Q7XZZ1 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=GATC PE=2 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 5.8e-30 Identity = 64/97 (65.98%), Postives = 79/97 (81.44%), Query Frame = 0
BLAST of Csor.00g178200 vs. NCBI nr
Match: KAG6591723.1 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 196 bits (498), Expect = 4.17e-63 Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
BLAST of Csor.00g178200 vs. NCBI nr
Match: XP_023534971.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 193 bits (490), Expect = 3.13e-61 Identity = 96/98 (97.96%), Postives = 98/98 (100.00%), Query Frame = 0
BLAST of Csor.00g178200 vs. NCBI nr
Match: XP_022975686.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucurbita maxima]) HSP 1 Score: 187 bits (476), Expect = 4.26e-59 Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0
BLAST of Csor.00g178200 vs. NCBI nr
Match: XP_008466091.1 (PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis melo] >KAA0038633.1 glutamyl-tRNA(Gln) amidotransferase subunit C [Cucumis melo var. makuwa] >TYK31232.1 glutamyl-tRNA(Gln) amidotransferase subunit C [Cucumis melo var. makuwa]) HSP 1 Score: 167 bits (423), Expect = 5.05e-51 Identity = 84/98 (85.71%), Postives = 89/98 (90.82%), Query Frame = 0
BLAST of Csor.00g178200 vs. NCBI nr
Match: XP_038897282.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida] >XP_038897283.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida]) HSP 1 Score: 167 bits (422), Expect = 7.18e-51 Identity = 84/98 (85.71%), Postives = 89/98 (90.82%), Query Frame = 0
BLAST of Csor.00g178200 vs. ExPASy TrEMBL
Match: A0A6J1IEW2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111475576 PE=3 SV=1) HSP 1 Score: 187 bits (476), Expect = 2.06e-59 Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0
BLAST of Csor.00g178200 vs. ExPASy TrEMBL
Match: A0A5A7T6R5 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis melo var. makuwa OX=1194695 GN=GATC PE=3 SV=1) HSP 1 Score: 167 bits (423), Expect = 2.45e-51 Identity = 84/98 (85.71%), Postives = 89/98 (90.82%), Query Frame = 0
BLAST of Csor.00g178200 vs. ExPASy TrEMBL
Match: A0A1S3CQE8 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103503618 PE=3 SV=1) HSP 1 Score: 167 bits (423), Expect = 2.45e-51 Identity = 84/98 (85.71%), Postives = 89/98 (90.82%), Query Frame = 0
BLAST of Csor.00g178200 vs. ExPASy TrEMBL
Match: A0A6J1CQ90 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013151 PE=3 SV=1) HSP 1 Score: 164 bits (415), Expect = 4.31e-50 Identity = 84/97 (86.60%), Postives = 87/97 (89.69%), Query Frame = 0
BLAST of Csor.00g178200 vs. ExPASy TrEMBL
Match: A0A0A0LJU5 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis sativus OX=3659 GN=GATC PE=3 SV=1) HSP 1 Score: 162 bits (411), Expect = 1.64e-49 Identity = 82/97 (84.54%), Postives = 87/97 (89.69%), Query Frame = 0
BLAST of Csor.00g178200 vs. TAIR 10
Match: AT4G32915.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 129.8 bits (325), Expect = 1.2e-30 Identity = 59/95 (62.11%), Postives = 79/95 (83.16%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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