Csor.00g178200 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g178200
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionGlutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial
LocationCsor_Chr09: 3034467 .. 3037255 (-)
RNA-Seq ExpressionCsor.00g178200
SyntenyCsor.00g178200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCTCTTCAACCTCCCGATGTCCTCCGTTTAGCTGAAACAGCTCGAATTTCTCTCACTCCCGGTGAGGTATGCGAGGCTCTCCCCTCGTCCATCTTTACTTCTGTTTATTCAATTTTTTGAATCGAGTAACATTTGCTTCTTACTTTCGGGTTTGTGTTGTCTTGATTGTGTAATTCAGGTTGAAGAATTGGCGCCTAAAATTGGACAAGTTGTTGACTGGTAAGTTCATCTTTCCCTCGCCTATGCATACATACACAAACTCTCATAAACTAGTAGATCTTGAAATACAATGGTATCTTGGTCAGGTCTCTATGTAAATTATGATGGGATAACTGCATGTTAGGTCCTAAACATTGAAGGGATCTTCACCTACAGATTGTAGAATGTTGTTCTCCATAATTTGTTTGGTTTAATTGGTGCTCTAATATCATTTATAACCGTCCAAGCCTATCGTTAACCGATATTGTCCGAAAGAGCTTCTCCTCAACGTTTTAAAACGTGTATGTGAGGGAGAGGTTTCTACACTCTTATAAAGAATGTTTTGTTTCCCTCTCCAATCAATATGGGATCTCACAATCCATCCTACTTAGGGGATAGCGTCCTTACTAGCACACCGCCCGGTACCATTTGTAACAACCCAAGCTCACTGCTAGCCGATATTGTCCTCCCTTACAGGCTTCCTTCTCAAGATTTTTAAAACGCGTCTGTTAGGGAGACATTTTCACACCCTTATAAGGGAGTACTTCGTTCCCCTCTCCAACCGATGCGGGATCTCACATTACTTATTCGAACGTGACTTTTAGAGAGATGGTTCCCATGACAGCATAGGAACAAAAGATGGTTCAATGCGGTGGGAGGCTTCATTGGGAAGCACTTGGACAAATCAAAAGCGTCTACAAGAGAATTCCATATCTTTTTTTTTTTTTTGGAGAAAGGACAATGTAGGGAGATATGACAACAATTTTCTTCATCTTTCTTACTAAGATGCACTAGCTTGAGAGGAGAGAACGTGGGGGTCCTTTTTTGAACCTTTGCAGAATGCAAGCTTCCATGAGCTGGGTTCAATCCAAAAATCTCACCTTTTCAGACTCCTCCTCCCTCTAAATAAATAGCCTTAATGAACGGATTTGAAGGGACACCGCCACATCTCCTTTATTATTAAGGGAAATAGGAAGGTTGGAAAAGGAGGCAATTAGAATCCAAACTCCAACAGTGAACAGCCTTTGCTATGGAATTCAAACATTTTTGAGAAGAATGAATGATCTGTTCCATTAATTAGCCTTTTGAAGTTGAGGTTCCAACCCTAGTCACGTTGTGGGATTTTACATCGATTGGAGAGGGGAATGAAGCTTTCTTTACAAGGTGTGGAAACCTCTCCCTAGCAGACATATTTTAAAACTGTGAGCTGGATGGCGATATGTAAGGGTTGAAGTAGACAATATCTGCTAGCAGTGGTGGTATCAGAGCTAGGCACTGAATGGTGTGCCAGCGAGGACGCTGGACCCCGAAGGGGATTGTGAGATCCCACATCGGTTGGAGAGAGGAACGAAACATTATTTACAAGAGTGTGAAAACCTCTCTCTAGCATACGCATTTTAAAACCGTGAGGCTGATGGTAGTACGTAACCGGTCGAAACGGATAATATCTGCTAGGAAATTTTCGAAAATTTCTCCTTTAGAGGTCGTGAGGTGTCCATTGATCTGTCCCAAAAGAAACAGGGACGCCATTATCCACCTTAACATTCAAAACCACCTTCATCCTCTGACTACCTTTAGCAATGAAGTTCCATGGACTTTTGCCGTTGTAGCTTCCATTTTTCCTATGAAATTGTTCATTCTGTCGACTCAATTCCCCGGCTGTTGTACCCTTTGGTTTCCAATTACTTTAATATGATAACTTTATGTTTCAGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATGGAACCTTCCATTAGAGCAGGTGATCCTTAATCATTTTGCAACTTGTTTGTTGTTCTTCTTCCAGCATACCATAATACCTGTAACAGTCTGAGCCATTGCTAGATATTATCCGTTTTCGCCATTACGTATCACCGTCAGTCTCATATTTTAAAACACGTCTACTAGGGAGAGGCTTCTACACCCTTATAAATAATGTTTTGTTCCCCTATCCAATCGACGTAGGATCTCACAATCCACCCTCTTGGAAACCTAGCGTCCTTGCAGGCACACTACTCGGTGCCTGACTCTAATACCATTTGACCATTTTTTTTCACAACCATCTCGAGCATAATTTCCTTCTTCATCGACTTGAGTCTCAGTCTCCTCGGCCTACAATAAAATCTCATAATCTTATTATTATGCATGTATTTTGAAGTTAGGAAGGAAAACAAGGGTCATTAATACCTCGAAAGCTCTGGCGTTACAATACCTTTGATTGTTTCTCACGGTTAAGTGTTGGCTTCAAATCATACAAGTCAATCGATTGTAGTTTTTGCTGCACTTTCAAGTTATTTTTTGTGAACAGGACAGGCAAACAATTGTAGTGCAGCAAAAACTAGTACTAATTTTGCAACTATTTACAGATACTGGAGGTGTCAATCAGCGGAATGACGCTCCTGAAACATTTGAAAACAGGTAACCTGGTTATTTTTCAACTTGAGCTATCCCAACATTTGGCACCAAGCTTTGGCCATAACTTCTACTATCTTTTTGACACCAGAGAGGCCATGATTCGCGCAGTTCCAGCCTTTGATGAGCCGTATATCAAAGTTCCTAAAGTTCTCGATAAGGAGTAG

mRNA sequence

ATGGCCTCTCTTCAACCTCCCGATGTCCTCCGTTTAGCTGAAACAGCTCGAATTTCTCTCACTCCCGGTGAGGTTGAAGAATTGGCGCCTAAAATTGGACAAGTTGTTGACTGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATGGAACCTTCCATTAGAGCAGATACTGGAGGTGTCAATCAGCGGAATGACGCTCCTGAAACATTTGAAAACAGAGAGGCCATGATTCGCGCAGTTCCAGCCTTTGATGAGCCGTATATCAAAGTTCCTAAAGTTCTCGATAAGGAGTAG

Coding sequence (CDS)

ATGGCCTCTCTTCAACCTCCCGATGTCCTCCGTTTAGCTGAAACAGCTCGAATTTCTCTCACTCCCGGTGAGGTTGAAGAATTGGCGCCTAAAATTGGACAAGTTGTTGACTGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATGGAACCTTCCATTAGAGCAGATACTGGAGGTGTCAATCAGCGGAATGACGCTCCTGAAACATTTGAAAACAGAGAGGCCATGATTCGCGCAGTTCCAGCCTTTGATGAGCCGTATATCAAAGTTCCTAAAGTTCTCGATAAGGAGTAG

Protein sequence

MASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADTGGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLDKE
Homology
[Close]
BLAST of Csor.00g178200 vs. ExPASy Swiss-Prot
Match: D7STK2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vitis vinifera OX=29760 GN=GATC PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 9.2e-36
Identity = 72/97 (74.23%), Postives = 87/97 (89.69%), Query Frame = 0 

Query: 2   ASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADTGGV 61
           ++L PPD+ RLAETARISLTP EVEE APKI QV+DWFGQLQ VDLQS+EPSIRADT G 
Sbjct: 41  SALLPPDLPRLAETARISLTPHEVEEFAPKIRQVIDWFGQLQAVDLQSIEPSIRADTEGD 100

Query: 62  NQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLDKE 99
           N R+D+PETFENREA+I A+P+++EPY+KVPKVL+K+
Sbjct: 101 NLRDDSPETFENREAIIAAIPSYEEPYLKVPKVLNKD 137

[Close]
BLAST of Csor.00g178200 vs. ExPASy Swiss-Prot
Match: B9RRX2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ricinus communis OX=3988 GN=GATC PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.5e-33
Identity = 69/97 (71.13%), Postives = 82/97 (84.54%), Query Frame = 0 

Query: 2   ASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADTGGV 61
           +SLQPPDV RLAETARISL   EVEE APKI QV+DWFGQLQ VDL S+EP+IRAD+ G 
Sbjct: 47  SSLQPPDVSRLAETARISLNQNEVEEFAPKIRQVIDWFGQLQAVDLNSVEPAIRADSEGE 106

Query: 62  NQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLDKE 99
           N R+D PETF  REA+I AVP++++PY+KVPKVL+KE
Sbjct: 107 NLRDDVPETFSEREAIIAAVPSYEKPYVKVPKVLNKE 143

[Close]
BLAST of Csor.00g178200 vs. ExPASy Swiss-Prot
Match: B9INH0 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Populus trichocarpa OX=3694 GN=GATC PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.0e-31
Identity = 68/97 (70.10%), Postives = 81/97 (83.51%), Query Frame = 0 

Query: 2   ASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADTGGV 61
           +SL+PPDV RLAETARISLTP +VEE  PKI QV+DW   L +VDL S+EPSIRADT G 
Sbjct: 46  SSLEPPDVARLAETARISLTPQQVEEFGPKIRQVIDWHA-LLSVDLDSVEPSIRADTEGD 105

Query: 62  NQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLDKE 99
           N R+D PETFENREA+I AVP +++PY+KVPKVL+KE
Sbjct: 106 NLRHDNPETFENREAIIAAVPNYEDPYVKVPKVLNKE 141

[Close]
BLAST of Csor.00g178200 vs. ExPASy Swiss-Prot
Match: A2XK57 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=GATC PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.8e-30
Identity = 64/97 (65.98%), Postives = 79/97 (81.44%), Query Frame = 0 

Query: 3   SLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADTGGVN 62
           +L+PPD+ RLA  ARISL+P E EE APKI QVVDWFGQLQ VDL+S+EPS+RA T   N
Sbjct: 57  ALEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPSLRAGTAAGN 116

Query: 63  Q-RNDAPETFENREAMIRAVPAFDEPYIKVPKVLDKE 99
             R D PETF NR+A+I +VP++D+PYIKVP+VL+KE
Sbjct: 117 SLREDRPETFTNRDAIIESVPSYDDPYIKVPRVLNKE 153

[Close]
BLAST of Csor.00g178200 vs. ExPASy Swiss-Prot
Match: Q7XZZ1 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=GATC PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.8e-30
Identity = 64/97 (65.98%), Postives = 79/97 (81.44%), Query Frame = 0 

Query: 3   SLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADTGGVN 62
           +L+PPD+ RLA  ARISL+P E EE APKI QVVDWFGQLQ VDL+S+EPS+RA T   N
Sbjct: 57  ALEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPSLRAGTAAGN 116

Query: 63  Q-RNDAPETFENREAMIRAVPAFDEPYIKVPKVLDKE 99
             R D PETF NR+A+I +VP++D+PYIKVP+VL+KE
Sbjct: 117 SLREDRPETFTNRDAIIESVPSYDDPYIKVPRVLNKE 153

[Close]
BLAST of Csor.00g178200 vs. NCBI nr
Match: KAG6591723.1 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196 bits (498), Expect = 4.17e-63
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADTGG 60
          MASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADTGG
Sbjct: 1  MASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADTGG 60

Query: 61 VNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLDKE 98
          VNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLDKE
Sbjct: 61 VNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLDKE 98

[Close]
BLAST of Csor.00g178200 vs. NCBI nr
Match: XP_023534971.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193 bits (490), Expect = 3.13e-61
Identity = 96/98 (97.96%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1   MASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADTGG 60
           MASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADTGG
Sbjct: 48  MASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADTGG 107

Query: 61  VNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLDKE 98
           VNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVL+K+
Sbjct: 108 VNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD 145

[Close]
BLAST of Csor.00g178200 vs. NCBI nr
Match: XP_022975686.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 187 bits (476), Expect = 4.26e-59
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0 

Query: 1   MASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADTGG 60
           MASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEP IRAD+GG
Sbjct: 48  MASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPFIRADSGG 107

Query: 61  VNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLDKE 98
            NQRNDAPETFENREAMIRAVPAFDEPYIKVPKVL+KE
Sbjct: 108 GNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKE 145

[Close]
BLAST of Csor.00g178200 vs. NCBI nr
Match: XP_008466091.1 (PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis melo] >KAA0038633.1 glutamyl-tRNA(Gln) amidotransferase subunit C [Cucumis melo var. makuwa] >TYK31232.1 glutamyl-tRNA(Gln) amidotransferase subunit C [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (423), Expect = 5.05e-51
Identity = 84/98 (85.71%), Postives = 89/98 (90.82%), Query Frame = 0 

Query: 1   MASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADTGG 60
           +ASLQPPDV RLA+TARISLTP +VEE APKI QVVDWFGQLQTVDLQS+EPSIRADT G
Sbjct: 48  LASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEG 107

Query: 61  VNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLDKE 98
            NQRND PETFENREAMI AVP FDEPYIKVPKVL+KE
Sbjct: 108 GNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of Csor.00g178200 vs. NCBI nr
Match: XP_038897282.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida] >XP_038897283.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida])

HSP 1 Score: 167 bits (422), Expect = 7.18e-51
Identity = 84/98 (85.71%), Postives = 89/98 (90.82%), Query Frame = 0 

Query: 1   MASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADTGG 60
           +ASLQPPDV RLAETARISLTP +VEE APKI QVVDWFGQLQTVDLQS+EP+IRADT G
Sbjct: 48  LASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPAIRADTEG 107

Query: 61  VNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLDKE 98
            NQRND PETFENREAMI AVP FDEPYIKVPKVL+KE
Sbjct: 108 GNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of Csor.00g178200 vs. ExPASy TrEMBL
Match: A0A6J1IEW2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111475576 PE=3 SV=1)

HSP 1 Score: 187 bits (476), Expect = 2.06e-59
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0 

Query: 1   MASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADTGG 60
           MASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEP IRAD+GG
Sbjct: 48  MASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPFIRADSGG 107

Query: 61  VNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLDKE 98
            NQRNDAPETFENREAMIRAVPAFDEPYIKVPKVL+KE
Sbjct: 108 GNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKE 145

[Close]
BLAST of Csor.00g178200 vs. ExPASy TrEMBL
Match: A0A5A7T6R5 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis melo var. makuwa OX=1194695 GN=GATC PE=3 SV=1)

HSP 1 Score: 167 bits (423), Expect = 2.45e-51
Identity = 84/98 (85.71%), Postives = 89/98 (90.82%), Query Frame = 0 

Query: 1   MASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADTGG 60
           +ASLQPPDV RLA+TARISLTP +VEE APKI QVVDWFGQLQTVDLQS+EPSIRADT G
Sbjct: 48  LASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEG 107

Query: 61  VNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLDKE 98
            NQRND PETFENREAMI AVP FDEPYIKVPKVL+KE
Sbjct: 108 GNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of Csor.00g178200 vs. ExPASy TrEMBL
Match: A0A1S3CQE8 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103503618 PE=3 SV=1)

HSP 1 Score: 167 bits (423), Expect = 2.45e-51
Identity = 84/98 (85.71%), Postives = 89/98 (90.82%), Query Frame = 0 

Query: 1   MASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADTGG 60
           +ASLQPPDV RLA+TARISLTP +VEE APKI QVVDWFGQLQTVDLQS+EPSIRADT G
Sbjct: 48  LASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEG 107

Query: 61  VNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLDKE 98
            NQRND PETFENREAMI AVP FDEPYIKVPKVL+KE
Sbjct: 108 GNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of Csor.00g178200 vs. ExPASy TrEMBL
Match: A0A6J1CQ90 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013151 PE=3 SV=1)

HSP 1 Score: 164 bits (415), Expect = 4.31e-50
Identity = 84/97 (86.60%), Postives = 87/97 (89.69%), Query Frame = 0 

Query: 2   ASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADTGGV 61
           ASLQPPDV RLAETARISLTP EVEE APKI QVVDWFGQLQTVDLQS+EPSIRADT G 
Sbjct: 51  ASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGG 110

Query: 62  NQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLDKE 98
           NQRND  ETFENREAMI AVP FDEPYI+VPKVL+KE
Sbjct: 111 NQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE 147

[Close]
BLAST of Csor.00g178200 vs. ExPASy TrEMBL
Match: A0A0A0LJU5 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis sativus OX=3659 GN=GATC PE=3 SV=1)

HSP 1 Score: 162 bits (411), Expect = 1.64e-49
Identity = 82/97 (84.54%), Postives = 87/97 (89.69%), Query Frame = 0 

Query: 2   ASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADTGGV 61
           ASLQPPDV RLA+TARISLTP + EE APKI QVVDWFGQLQTVDLQS+EPSIRADT G 
Sbjct: 49  ASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGG 108

Query: 62  NQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLDKE 98
           +QRND PETFENREAMI AVP FDEPYIKVPKVL+KE
Sbjct: 109 SQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of Csor.00g178200 vs. TAIR 10
Match: AT4G32915.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 129.8 bits (325), Expect = 1.2e-30
Identity = 59/95 (62.11%), Postives = 79/95 (83.16%), Query Frame = 0 

Query: 4   LQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADTGGVNQ 63
           LQPPDV RLA+TARISLTP E+EE   KI +V+DWFGQLQ VD+ S+EP+IRA+  G N 
Sbjct: 61  LQPPDVARLAQTARISLTPAEIEECETKIRRVIDWFGQLQQVDVNSVEPAIRAEMDGGNL 120

Query: 64  RNDAPETFENREAMIRAVPAFDEPYIKVPKVLDKE 99
           R DAPETF+NR+++  ++P+F++ Y+KVPK+L+KE
Sbjct: 121 REDAPETFDNRDSIRASIPSFEDAYLKVPKILNKE 155

The following BLAST results are available for this feature:
BLAST of Csor.00g178200 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
D7STK29.2e-3674.23Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vi... [more]
B9RRX21.5e-3371.13Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ri... [more]
B9INH04.0e-3170.10Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Po... [more]
A2XK575.8e-3065.98Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Or... [more]
Q7XZZ15.8e-3065.98Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Or... [more]
BLAST of Csor.00g178200 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6591723.14.17e-63100.00Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial, part... [more]
XP_023534971.13.13e-6197.96glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like ... [more]
XP_022975686.14.26e-5995.92glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like ... [more]
XP_008466091.15.05e-5185.71PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochon... [more]
XP_038897282.17.18e-5185.71glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Beni... [more]
BLAST of Csor.00g178200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IEW22.06e-5995.92Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A5A7T6R52.45e-5185.71Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A1S3CQE82.45e-5185.71Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A6J1CQ904.31e-5086.60Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Mo... [more]
A0A0A0LJU51.64e-4984.54Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
BLAST of Csor.00g178200 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G32915.11.2e-3062.11FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translation... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.20.60coord: 5..46
e-value: 1.4E-8
score: 36.7
NoneNo IPR availablePANTHERPTHR15004:SF2GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT C, CHLOROPLASTIC/MITOCHONDRIALcoord: 7..98
IPR003837Glu-tRNAGln amidotransferase C subunitPFAMPF02686Glu-tRNAGlncoord: 20..91
e-value: 9.4E-10
score: 38.7
IPR003837Glu-tRNAGln amidotransferase C subunitTIGRFAMTIGR00135TIGR00135coord: 8..96
e-value: 4.5E-15
score: 53.7
IPR003837Glu-tRNAGln amidotransferase C subunitPANTHERPTHR15004UNCHARACTERIZEDcoord: 7..98
IPR003837Glu-tRNAGln amidotransferase C subunitHAMAPMF_00122GatCcoord: 1..96
score: 18.012709
IPR036113Glu-tRNAGln amidotransferase superfamily, subunit CSUPERFAMILY141000Glu-tRNAGln amidotransferase C subunitcoord: 4..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g178200.m01Csor.00g178200.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070681 glutaminyl-tRNAGln biosynthesis via transamidation
biological_process GO:0032543 mitochondrial translation
biological_process GO:0006450 regulation of translational fidelity
cellular_component GO:0009507 chloroplast
cellular_component GO:0030956 glutamyl-tRNA(Gln) amidotransferase complex
cellular_component GO:0005739 mitochondrion
molecular_function GO:0005524 ATP binding
molecular_function GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
molecular_function GO:0016740 transferase activity