Csor.00g173060 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g173060
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr11: 5938811 .. 5939131 (+)
RNA-Seq ExpressionCsor.00g173060
SyntenyCsor.00g173060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAATTGCAGAAATCAAAGGATCATAGGAAGCTGCATAAGAAACAACATGAACAAGAAGAAGAAGAACAGGGGAAAAACAGAGAGGGTGGAGAAGAGGAACAGAGAGCATCAATGGCGGACGGAGGAAGAAGAGAAATGGGGGATTTGGGGGGGCAGAGAAATGGGGAGTTGGGGAATTGGATTTGGATTGCAGAGATGAATGGAATGGAAATGGAAGAAGTTTCTCTCTCTAGATTTGAGGAGAGAGAAAGGGAAGGAAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGAGAGAATGA

mRNA sequence

ATGGCCAAATTGCAGAAATCAAAGGATCATAGGAAGCTGCATAAGAAACAACATGAACAAGAAGAAGAAGAACAGGGGAAAAACAGAGAGGGTGGAGAAGAGGAACAGAGAGCATCAATGGCGGACGGAGGAAGAAGAGAAATGGGGGATTTGGGGGGGCAGAGAAATGGGGAGTTGGGGAATTGGATTTGGATTGCAGAGATGAATGGAATGGAAATGGAAGAAGTTTCTCTCTCTAGATTTGAGGAGAGAGAAAGGGAAGGAAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGAGAGAATGA

Coding sequence (CDS)

ATGGCCAAATTGCAGAAATCAAAGGATCATAGGAAGCTGCATAAGAAACAACATGAACAAGAAGAAGAAGAACAGGGGAAAAACAGAGAGGGTGGAGAAGAGGAACAGAGAGCATCAATGGCGGACGGAGGAAGAAGAGAAATGGGGGATTTGGGGGGGCAGAGAAATGGGGAGTTGGGGAATTGGATTTGGATTGCAGAGATGAATGGAATGGAAATGGAAGAAGTTTCTCTCTCTAGATTTGAGGAGAGAGAAAGGGAAGGAAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGAGAGAATGA

Protein sequence

MAKLQKSKDHRKLHKKQHEQEEEEQGKNREGGEEEQRASMADGGRREMGDLGGQRNGELGNWIWIAEMNGMEMEEVSLSRFEEREREGRKKKKKKKKKKKKKKGRE
Homology
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BLAST of Csor.00g173060 vs. NCBI nr
Match: KAG6588379.1 (hypothetical protein SDJN03_16944, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177 bits (448), Expect = 3.16e-55
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MAKLQKSKDHRKLHKKQHEQEEEEQGKNREGGEEEQRASMADGGRREMGDLGGQRNGELG 60
           MAKLQKSKDHRKLHKKQHEQEEEEQGKNREGGEEEQRASMADGGRREMGDLGGQRNGELG
Sbjct: 1   MAKLQKSKDHRKLHKKQHEQEEEEQGKNREGGEEEQRASMADGGRREMGDLGGQRNGELG 60

Query: 61  NWIWIAEMNGMEMEEVSLSRFEEREREGRKKKKKKKKKKKKKKGRE 106
           NWIWIAEMNGMEMEEVSLSRFEEREREGRKKKKKKKKKKKKKKGRE
Sbjct: 61  NWIWIAEMNGMEMEEVSLSRFEEREREGRKKKKKKKKKKKKKKGRE 106

The following BLAST results are available for this feature:
BLAST of Csor.00g173060 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g173060 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6588379.13.16e-55100.00hypothetical protein SDJN03_16944, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g173060 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g173060 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 4..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 89..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g173060.m01Csor.00g173060.m01mRNA