Csor.00g173060 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g173060
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr11: 5938811 .. 5939131 (+)
RNA-Seq Expression	Csor.00g173060
Synteny	Csor.00g173060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAATTGCAGAAATCAAAGGATCATAGGAAGCTGCATAAGAAACAACATGAACAAGAAGAAGAAGAACAGGGGAAAAACAGAGAGGGTGGAGAAGAGGAACAGAGAGCATCAATGGCGGACGGAGGAAGAAGAGAAATGGGGGATTTGGGGGGGCAGAGAAATGGGGAGTTGGGGAATTGGATTTGGATTGCAGAGATGAATGGAATGGAAATGGAAGAAGTTTCTCTCTCTAGATTTGAGGAGAGAGAAAGGGAAGGAAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGAGAGAATGA

mRNA sequence

ATGGCCAAATTGCAGAAATCAAAGGATCATAGGAAGCTGCATAAGAAACAACATGAACAAGAAGAAGAAGAACAGGGGAAAAACAGAGAGGGTGGAGAAGAGGAACAGAGAGCATCAATGGCGGACGGAGGAAGAAGAGAAATGGGGGATTTGGGGGGGCAGAGAAATGGGGAGTTGGGGAATTGGATTTGGATTGCAGAGATGAATGGAATGGAAATGGAAGAAGTTTCTCTCTCTAGATTTGAGGAGAGAGAAAGGGAAGGAAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGAGAGAATGA

Coding sequence (CDS)

ATGGCCAAATTGCAGAAATCAAAGGATCATAGGAAGCTGCATAAGAAACAACATGAACAAGAAGAAGAAGAACAGGGGAAAAACAGAGAGGGTGGAGAAGAGGAACAGAGAGCATCAATGGCGGACGGAGGAAGAAGAGAAATGGGGGATTTGGGGGGGCAGAGAAATGGGGAGTTGGGGAATTGGATTTGGATTGCAGAGATGAATGGAATGGAAATGGAAGAAGTTTCTCTCTCTAGATTTGAGGAGAGAGAAAGGGAAGGAAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGAGAGAATGA

Protein sequence

MAKLQKSKDHRKLHKKQHEQEEEEQGKNREGGEEEQRASMADGGRREMGDLGGQRNGELGNWIWIAEMNGMEMEEVSLSRFEEREREGRKKKKKKKKKKKKKKGRE

Homology

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BLAST of Csor.00g173060 vs. NCBI nr
Match: KAG6588379.1 (hypothetical protein SDJN03_16944, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177 bits (448), Expect = 3.16e-55
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MAKLQKSKDHRKLHKKQHEQEEEEQGKNREGGEEEQRASMADGGRREMGDLGGQRNGELG 60
           MAKLQKSKDHRKLHKKQHEQEEEEQGKNREGGEEEQRASMADGGRREMGDLGGQRNGELG
Sbjct: 1   MAKLQKSKDHRKLHKKQHEQEEEEQGKNREGGEEEQRASMADGGRREMGDLGGQRNGELG 60

Query: 61  NWIWIAEMNGMEMEEVSLSRFEEREREGRKKKKKKKKKKKKKKGRE 106
           NWIWIAEMNGMEMEEVSLSRFEEREREGRKKKKKKKKKKKKKKGRE
Sbjct: 61  NWIWIAEMNGMEMEEVSLSRFEEREREGRKKKKKKKKKKKKKKGRE 106

The following BLAST results are available for this feature:

BLAST of Csor.00g173060 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g173060 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588379.1	3.16e-55	100.00	hypothetical protein SDJN03_16944, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g173060 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g173060 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 4..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g173060.m01	Csor.00g173060.m01	mRNA