Csor.00g172210 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g172210
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr16: 3264599 .. 3266374 (-)
RNA-Seq Expression	Csor.00g172210
Synteny	Csor.00g172210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACTTTCGAATAAGAACCAGCAATTCGGCTACATCAAAACCCCAGATCCCGTGCTCGTCGTTGTTGCAAAAGCCTCAAGCATCGCCATCGGGAAGTGGAAAAAAGGAGCGGAGAAGAGGATGAAGAAGAGGGTGAGGCTCGCACAACGAAGCAAAGGAGTGCTTAGTCACCACCAGAGGGCGAGAGCTTCAATCAGAAGACATGCCACACACCCTTCTCGAGCTTTGAACGGATCCAACCAATTTCTTCTTCAATTCTTTTTTCTTCTTTTTTTTCCTTTTTCATGTTTAATATTAAATTCAATTGGCTAAATTATATAAAATATATGTAATCGTTCTAATTTAAAAAATATTATCAAACCTTCAATAATTCTCTCCCAACTTTTATATATATATATATATATATATATATATATATATATATTTATTTTATATTTGCAGTTAATTTGAGAGGAAAATAATTGATATTTATTTATAAAAATATATCTAAATTTTTAATAATTTCATTATAAAAATGATTAGAAAGTCTAGTTAGCATTGAAGAGGAAATACATCCAAGAAGGAATCTTTTACTCCATTTGATGAAGTAAGGAGAATTCTAAAGATGAAGGTGTCGAAGAAAATGAGAATGAAGCAAGTGATCTTAACAAGAGTGAGCAGACTTGGAATAGAGGTTGGAGTGGGGTCAAGGGGTCTCGTTAGAGTCGTTGGCATCAACTTGTAGTAGTTGTTTCCAGTGTTTCAGTCACCTTTCAATGGCTCCCTGGATTGGAGAGGAGCGAAGCCGTTTTACCAAGTGAAAGAAAGGAGAGGACCACCTGCGATAGGAGAAGAAATTTTTTTACGGAATGTCCTACTCCTACCCGAGCTTTCCGATCAACCAATCCCCTAGTTTCAGGGGCATCTCTATCTTAGGTAGGGTCATAGATCACTAATTAGTCGAATGAGCCTATCCCTCTAGCCTATCATTATTGGGTTGATCCGATGAATAAAAAGATAAGAAACTTGATCCTTCATATATATATATATATATATATAATGAGAGAAAGAAGATGAAGATGAAGATGATATACAAGAATTGAGAGGGGAAGGGGTTTTGTTTGGAGAAAGTTTATAACTAAAAAAGAAAAAAAACTCGAACGTTTACTCTTTGGTAACCAAAGAAACCACCCGAAAAAAACTAGATTCTCAAAAAAGTTATCATAAATTTATCGATCATTGACATCAGAACAACCAAACAAACCATGCTCTATAAAACATGATTTAAGAAACAATAGCTTTTAAAAAGGTTGATGGTTTTTTGAAGGGGGTTAAAAATTGTAGGTGGGCTGAATGAATGGGTGAAAAGCAAAGGTCCAGTGGTTACCAAGAAGGTTAGGAAAATAAGTGAGCTCCTCTATAAGCAATGTAGCCATGAATTCAGGGGAAAAGGGAAAAAAGAAGCTTTAAAGTAAATGCTCCTCTTCTCCAACTAATTTCCTCTTTTCAATCCTTAACTTTCAGTCCAAACATTTAACACTGGGCCCTACACCTTCCAATCCCTATGATTAATCAACCTTTTACTATAGCCTGTTTGTGCATAACTAAGGTAGGGTCACTAATATTCTAACACTTCTATTTGGTTTGGAAATCTCAGCCTCTAAGCTAGTCAAAAGCAAGGCAAGGCAAGTCTCTATCAGTATCTTGCTTGCAAGCTTTGGCTATGGAGCCGCTTGCACCATTCCTACCAACTTATTCTCACAAACAAACCTTCATATCAGCGCAGCTTTCTAA

mRNA sequence

ATGAAACTTTCGAATAAGAACCAGCAATTCGGCTACATCAAAACCCCAGATCCCGTGCTCGTCGTTGTTGCAAAAGCCTCAAGCATCGCCATCGGGAAGTGGAAAAAAGGAGCGGAGAAGAGGATGAAGAAGAGGGAGAATTCTAAAGATGAAGGTGTCGAAGAAAATGAGAATGAAGCAAGTGATCTTAACAAGAGTGAGCAGACTTGGAATAGAGCCTCTAAGCTAGTCAAAAGCAAGGCAAGGCAAGTCTCTATCAGTATCTTGCTTGCAAGCTTTGGCTATGGAGCCGCTTGCACCATTCCTACCAACTTATTCTCACAAACAAACCTTCATATCAGCGCAGCTTTCTAA

Coding sequence (CDS)

ATGAAACTTTCGAATAAGAACCAGCAATTCGGCTACATCAAAACCCCAGATCCCGTGCTCGTCGTTGTTGCAAAAGCCTCAAGCATCGCCATCGGGAAGTGGAAAAAAGGAGCGGAGAAGAGGATGAAGAAGAGGGAGAATTCTAAAGATGAAGGTGTCGAAGAAAATGAGAATGAAGCAAGTGATCTTAACAAGAGTGAGCAGACTTGGAATAGAGCCTCTAAGCTAGTCAAAAGCAAGGCAAGGCAAGTCTCTATCAGTATCTTGCTTGCAAGCTTTGGCTATGGAGCCGCTTGCACCATTCCTACCAACTTATTCTCACAAACAAACCTTCATATCAGCGCAGCTTTCTAA

Protein sequence

MKLSNKNQQFGYIKTPDPVLVVVAKASSIAIGKWKKGAEKRMKKRENSKDEGVEENENEASDLNKSEQTWNRASKLVKSKARQVSISILLASFGYGAACTIPTNLFSQTNLHISAAF

Homology

[Close]

BLAST of Csor.00g172210 vs. NCBI nr
Match: KAG6577214.1 (hypothetical protein SDJN03_24788, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 223 bits (567), Expect = 5.00e-73
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MKLSNKNQQFGYIKTPDPVLVVVAKASSIAIGKWKKGAEKRMKKRENSKDEGVEENENEA 60
           MKLSNKNQQFGYIKTPDPVLVVVAKASSIAIGKWKKGAEKRMKKRENSKDEGVEENENEA
Sbjct: 1   MKLSNKNQQFGYIKTPDPVLVVVAKASSIAIGKWKKGAEKRMKKRENSKDEGVEENENEA 60

Query: 61  SDLNKSEQTWNRASKLVKSKARQVSISILLASFGYGAACTIPTNLFSQTNLHISAAF 117
           SDLNKSEQTWNRASKLVKSKARQVSISILLASFGYGAACTIPTNLFSQTNLHISAAF
Sbjct: 61  SDLNKSEQTWNRASKLVKSKARQVSISILLASFGYGAACTIPTNLFSQTNLHISAAF 117

The following BLAST results are available for this feature:

BLAST of Csor.00g172210 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g172210 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577214.1	5.00e-73	100.00	hypothetical protein SDJN03_24788, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g172210 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g172210 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g172210.m01	Csor.00g172210.m01	mRNA