Csor.00g171400 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g171400
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	dof zinc finger protein DOF1.4
Location	Csor_Chr11: 8195863 .. 8196212 (+)
RNA-Seq Expression	Csor.00g171400
Synteny	Csor.00g171400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACTCACTTCCCATCCTCCCGCCATCTCATTCGATCGAAATTCACAGCTTTTCGGTAATTTCGAAGCTGGTTTGATGAAGGAAGACTTGAACAGGTAAATCACCGTTGAACTCAAAAGTTTAAATTGATAGATTGAACGTATAAAAAATTAATCATTTGTTCGCATTGACTTAATAGGCTGTCCCATAATCAAACCGAGCAAGTCGATCCATCGAATTTTTCTGACCCTTCTCTCGGTTCTGGAACTCATCAACCACGGCGACGAGCAATTGGCATGATCCGACGAATAATGGGTCCTCAATTGCTTCTCTATTCTAGGAGATCAAAGCATTGGGTGTCTATATAA

mRNA sequence

ATGCAACTCACTTCCCATCCTCCCGCCATCTCATTCGATCGAAATTCACAGCTTTTCGGTAATTTCGAAGCTGGTTTGATGAAGGAAGACTTGAACAGGCTGTCCCATAATCAAACCGAGCAAGTCGATCCATCGAATTTTTCTGACCCTTCTCTCGGTTCTGGAACTCATCAACCACGGCGACGAGCAATTGGCATGATCCGACGAATAATGGGTCCTCAATTGCTTCTCTATTCTAGGAGATCAAAGCATTGGGTGTCTATATAA

Coding sequence (CDS)

ATGCAACTCACTTCCCATCCTCCCGCCATCTCATTCGATCGAAATTCACAGCTTTTCGGTAATTTCGAAGCTGGTTTGATGAAGGAAGACTTGAACAGGCTGTCCCATAATCAAACCGAGCAAGTCGATCCATCGAATTTTTCTGACCCTTCTCTCGGTTCTGGAACTCATCAACCACGGCGACGAGCAATTGGCATGATCCGACGAATAATGGGTCCTCAATTGCTTCTCTATTCTAGGAGATCAAAGCATTGGGTGTCTATATAA

Protein sequence

MQLTSHPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPSLGSGTHQPRRRAIGMIRRIMGPQLLLYSRRSKHWVSI

Homology

[Close]

BLAST of Csor.00g171400 vs. NCBI nr
Match: KAG6588551.1 (hypothetical protein SDJN03_17116, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 183 bits (465), Expect = 2.19e-58
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MQLTSHPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPSLGSGTHQPR 60
          MQLTSHPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPSLGSGTHQPR
Sbjct: 1  MQLTSHPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPSLGSGTHQPR 60

Query: 61 RRAIGMIRRIMGPQLLLYSRRSKHWVSI 88
          RRAIGMIRRIMGPQLLLYSRRSKHWVSI
Sbjct: 61 RRAIGMIRRIMGPQLLLYSRRSKHWVSI 88

[Close]

BLAST of Csor.00g171400 vs. NCBI nr
Match: KAG6604456.1 (Dof zinc finger protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.4 bits (246), Expect = 4.78e-23
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 6   HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPS 51
           HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPS
Sbjct: 198 HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPS 243

[Close]

BLAST of Csor.00g171400 vs. NCBI nr
Match: XP_023544408.1 (dof zinc finger protein DOF1.4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.8 bits (242), Expect = 1.73e-22
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 6   HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPS 51
           HPPAISFDRNSQ FGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPS
Sbjct: 194 HPPAISFDRNSQFFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPS 239

[Close]

BLAST of Csor.00g171400 vs. NCBI nr
Match: XP_022978746.1 (dof zinc finger protein DOF1.4 [Cucurbita maxima])

HSP 1 Score: 97.4 bits (241), Expect = 2.31e-22
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 6   HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPS 51
           HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQV+PSNFSDPS
Sbjct: 191 HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVNPSNFSDPS 236

[Close]

BLAST of Csor.00g171400 vs. NCBI nr
Match: XP_022925833.1 (dof zinc finger protein DOF1.4 [Cucurbita moschata])

HSP 1 Score: 96.3 bits (238), Expect = 7.27e-22
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 6   HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPS 51
           HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSD S
Sbjct: 198 HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDSS 243

[Close]

BLAST of Csor.00g171400 vs. ExPASy TrEMBL
Match: A0A6J1INW3 (dof zinc finger protein DOF1.4 OS=Cucurbita maxima OX=3661 GN=LOC111478610 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.12e-22
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 6   HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPS 51
           HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQV+PSNFSDPS
Sbjct: 191 HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVNPSNFSDPS 236

[Close]

BLAST of Csor.00g171400 vs. ExPASy TrEMBL
Match: A0A6J1EGC8 (dof zinc finger protein DOF1.4 OS=Cucurbita moschata OX=3662 GN=LOC111433122 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.52e-22
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 6   HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPS 51
           HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSD S
Sbjct: 198 HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDSS 243

[Close]

BLAST of Csor.00g171400 vs. ExPASy TrEMBL
Match: A0A6J1KR08 (dof zinc finger protein DOF1.4-like OS=Cucurbita maxima OX=3661 GN=LOC111497470 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.36e-10
Identity = 37/53 (69.81%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 6   HPPAISFDRNSQLFGNFEAGL---MKE----DLNRLSHNQTEQVDPSNFSDPS 51
           H P ISFDRNSQL GNFEA L   MKE     LNRL  N TEQVD SNFSDPS
Sbjct: 173 HHPTISFDRNSQLSGNFEASLTMPMKEVKMEGLNRLRQNHTEQVDLSNFSDPS 225

[Close]

BLAST of Csor.00g171400 vs. ExPASy TrEMBL
Match: A0A0A0KI37 (Dof-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G517950 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.63e-10
Identity = 33/53 (62.26%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 6   HPPAISFDRNSQLFGNFEAGLMK-------EDLNRLSHNQTEQVDPSNFSDPS 51
           H P ISFDRNS L GN +  LM        EDLNRL  NQTEQ+D SNFSDPS
Sbjct: 169 HHPTISFDRNSHLLGNIDPNLMTSMKEIKIEDLNRLCQNQTEQIDLSNFSDPS 221

[Close]

BLAST of Csor.00g171400 vs. ExPASy TrEMBL
Match: A0A5A7UBU9 (Dof zinc finger protein DOF1.7-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007570 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.72e-10
Identity = 33/53 (62.26%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 6   HPPAISFDRNSQLFGNFEAGLMK-------EDLNRLSHNQTEQVDPSNFSDPS 51
           H P ISFDRNS L GN +  LM        EDLNRL  NQTEQ+D SNFSDPS
Sbjct: 171 HHPTISFDRNSHLLGNIDPNLMTSMKEIKIEDLNRLCQNQTEQIDLSNFSDPS 223

The following BLAST results are available for this feature:

BLAST of Csor.00g171400 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g171400 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588551.1	2.19e-58	100.00	hypothetical protein SDJN03_17116, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6604456.1	4.78e-23	100.00	Dof zinc finger protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023544408.1	1.73e-22	97.83	dof zinc finger protein DOF1.4 [Cucurbita pepo subsp. pepo]	[more]
XP_022978746.1	2.31e-22	97.83	dof zinc finger protein DOF1.4 [Cucurbita maxima]	[more]
XP_022925833.1	7.27e-22	97.83	dof zinc finger protein DOF1.4 [Cucurbita moschata]	[more]

BLAST of Csor.00g171400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1INW3	1.12e-22	97.83	dof zinc finger protein DOF1.4 OS=Cucurbita maxima OX=3661 GN=LOC111478610 PE=4 ...	[more]
A0A6J1EGC8	3.52e-22	97.83	dof zinc finger protein DOF1.4 OS=Cucurbita moschata OX=3662 GN=LOC111433122 PE=...	[more]
A0A6J1KR08	3.36e-10	69.81	dof zinc finger protein DOF1.4-like OS=Cucurbita maxima OX=3661 GN=LOC111497470 ...	[more]
A0A0A0KI37	4.63e-10	62.26	Dof-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G517950 PE...	[more]
A0A5A7UBU9	4.72e-10	62.26	Dof zinc finger protein DOF1.7-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of Csor.00g171400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g171400.m01	Csor.00g171400.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding