Csor.00g157560 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSsinglestart_codonpolypeptidestop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGACGACTCGTTTCAAGAAGAACAGGAAGAAGAGAGGTCATGTTAGCGCCGGTCATGGTCGAATCGGCAAACACCGAAAGCATCCAGGTGGTCGGGGTAACGCCGGAGGTATGCACCACCATCGGATTCTCTTCGACAAGTATCATCCCGGTTATTTCGGTAAGGTCGGTATGCGTTACTTTCACAAGCTTCGCAACAAGTTCTATTGCCCGATTGTCAACGTTGACAAGATCTGGTCCTTGATCCCTCAAGAAGTGAAGGATAAGGCCTCCAAAGACAATGTTCCATTGGTCGATGTTACGCAGTTCGGTTATTTCAAGGTTTTAGGCAAGGGTGTCTTGCCGGAGAATCAGCCTATTGTGGTGAAGGCCAAGCTCGTGTCAAAGATCGCCGAGAAGAAGATTAAGGAGGCTGGTGGCGCAGTGGTTCTTACAGCCTAG ATGACGACTCGTTTCAAGAAGAACAGGAAGAAGAGAGGTCATGTTAGCGCCGGTCATGGTCGAATCGGCAAACACCGAAAGCATCCAGGTGGTCGGGGTAACGCCGGAGGTATGCACCACCATCGGATTCTCTTCGACAAGTATCATCCCGGTTATTTCGGTAAGGTCGGTATGCGTTACTTTCACAAGCTTCGCAACAAGTTCTATTGCCCGATTGTCAACGTTGACAAGATCTGGTCCTTGATCCCTCAAGAAGTGAAGGATAAGGCCTCCAAAGACAATGTTCCATTGGTCGATGTTACGCAGTTCGGTTATTTCAAGGTTTTAGGCAAGGGTGTCTTGCCGGAGAATCAGCCTATTGTGGTGAAGGCCAAGCTCGTGTCAAAGATCGCCGAGAAGAAGATTAAGGAGGCTGGTGGCGCAGTGGTTCTTACAGCCTAG ATGACGACTCGTTTCAAGAAGAACAGGAAGAAGAGAGGTCATGTTAGCGCCGGTCATGGTCGAATCGGCAAACACCGAAAGCATCCAGGTGGTCGGGGTAACGCCGGAGGTATGCACCACCATCGGATTCTCTTCGACAAGTATCATCCCGGTTATTTCGGTAAGGTCGGTATGCGTTACTTTCACAAGCTTCGCAACAAGTTCTATTGCCCGATTGTCAACGTTGACAAGATCTGGTCCTTGATCCCTCAAGAAGTGAAGGATAAGGCCTCCAAAGACAATGTTCCATTGGTCGATGTTACGCAGTTCGGTTATTTCAAGGTTTTAGGCAAGGGTGTCTTGCCGGAGAATCAGCCTATTGTGGTGAAGGCCAAGCTCGTGTCAAAGATCGCCGAGAAGAAGATTAAGGAGGCTGGTGGCGCAGTGGTTCTTACAGCCTAG MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPIVVKAKLVSKIAEKKIKEAGGAVVLTA Homology
BLAST of Csor.00g157560 vs. ExPASy Swiss-Prot
Match: P49637 (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27AC PE=2 SV=2) HSP 1 Score: 271.9 bits (694), Expect = 4.1e-72 Identity = 129/146 (88.36%), Postives = 141/146 (96.58%), Query Frame = 0
BLAST of Csor.00g157560 vs. ExPASy Swiss-Prot
Match: Q9LR33 (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27AB PE=2 SV=1) HSP 1 Score: 266.5 bits (680), Expect = 1.7e-70 Identity = 127/146 (86.99%), Postives = 138/146 (94.52%), Query Frame = 0
BLAST of Csor.00g157560 vs. ExPASy Swiss-Prot
Match: P48160 (60S ribosomal protein L27a OS=Dictyostelium discoideum OX=44689 GN=rpl27a PE=3 SV=1) HSP 1 Score: 198.4 bits (503), Expect = 5.8e-50 Identity = 96/149 (64.43%), Postives = 120/149 (80.54%), Query Frame = 0
BLAST of Csor.00g157560 vs. ExPASy Swiss-Prot
Match: O01358 (60S ribosomal protein L27a OS=Oscheius tipulae OX=141969 GN=rpl-27a PE=3 SV=1) HSP 1 Score: 196.8 bits (499), Expect = 1.7e-49 Identity = 96/146 (65.75%), Postives = 112/146 (76.71%), Query Frame = 0
BLAST of Csor.00g157560 vs. ExPASy Swiss-Prot
Match: Q56K03 (60S ribosomal protein L27a OS=Bos taurus OX=9913 GN=RPL27A PE=2 SV=3) HSP 1 Score: 195.7 bits (496), Expect = 3.7e-49 Identity = 95/149 (63.76%), Postives = 119/149 (79.87%), Query Frame = 0
BLAST of Csor.00g157560 vs. NCBI nr
Match: XP_008446169.1 (PREDICTED: 60S ribosomal protein L27a-3 [Cucumis melo] >XP_022945883.1 60S ribosomal protein L27a-3 [Cucurbita moschata] >XP_022957581.1 60S ribosomal protein L27a-3 [Cucurbita moschata] >XP_022966982.1 60S ribosomal protein L27a-3 [Cucurbita maxima] >XP_022984987.1 60S ribosomal protein L27a-3 [Cucurbita maxima] >XP_023523163.1 60S ribosomal protein L27a-3 [Cucurbita pepo subsp. pepo] >XP_023541079.1 60S ribosomal protein L27a-3 [Cucurbita pepo subsp. pepo] >XP_031741794.1 60S ribosomal protein L27a-3 [Cucumis sativus] >KAA0034278.1 60S ribosomal protein L27a-3-like [Cucumis melo var. makuwa] >KAG6573714.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012791.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG6601534.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. sororia] >KGN51763.1 hypothetical protein Csa_007887 [Cucumis sativus]) HSP 1 Score: 295 bits (754), Expect = 1.30e-100 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Csor.00g157560 vs. NCBI nr
Match: XP_038891740.1 (60S ribosomal protein L27a-3-like [Benincasa hispida]) HSP 1 Score: 293 bits (751), Expect = 3.74e-100 Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Csor.00g157560 vs. NCBI nr
Match: KAG7032307.1 (60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 292 bits (747), Expect = 1.52e-99 Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0
BLAST of Csor.00g157560 vs. NCBI nr
Match: XP_010102488.1 (60S ribosomal protein L27a-3 [Morus notabilis] >XP_010113107.1 60S ribosomal protein L27a-3 [Morus notabilis] >EXB93552.1 hypothetical protein L484_014543 [Morus notabilis] >EXC65297.1 hypothetical protein L484_000089 [Morus notabilis]) HSP 1 Score: 290 bits (743), Expect = 6.21e-99 Identity = 139/146 (95.21%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Csor.00g157560 vs. NCBI nr
Match: XP_022151906.1 (60S ribosomal protein L27a-3 [Momordica charantia]) HSP 1 Score: 290 bits (743), Expect = 6.21e-99 Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 0
BLAST of Csor.00g157560 vs. ExPASy TrEMBL
Match: A0A6J1J3M5 (60S ribosomal protein L27a-3 OS=Cucurbita maxima OX=3661 GN=LOC111483090 PE=3 SV=1) HSP 1 Score: 295 bits (754), Expect = 6.31e-101 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Csor.00g157560 vs. ExPASy TrEMBL
Match: A0A6J1GZL8 (60S ribosomal protein L27a-3 OS=Cucurbita moschata OX=3662 GN=LOC111458930 PE=3 SV=1) HSP 1 Score: 295 bits (754), Expect = 6.31e-101 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Csor.00g157560 vs. ExPASy TrEMBL
Match: A0A5D3CUR0 (60S ribosomal protein L27a-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001380 PE=3 SV=1) HSP 1 Score: 295 bits (754), Expect = 6.31e-101 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Csor.00g157560 vs. ExPASy TrEMBL
Match: A0A0A0KQ56 (Ribosomal_L18e/L15P domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G598710 PE=3 SV=1) HSP 1 Score: 295 bits (754), Expect = 6.31e-101 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Csor.00g157560 vs. ExPASy TrEMBL
Match: A0A1S3BF89 (60S ribosomal protein L27a-3 OS=Cucumis melo OX=3656 GN=LOC103488974 PE=3 SV=1) HSP 1 Score: 295 bits (754), Expect = 6.31e-101 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Csor.00g157560 vs. TAIR 10
Match: AT1G70600.1 (Ribosomal protein L18e/L15 superfamily protein ) HSP 1 Score: 271.9 bits (694), Expect = 2.9e-73 Identity = 129/146 (88.36%), Postives = 141/146 (96.58%), Query Frame = 0
BLAST of Csor.00g157560 vs. TAIR 10
Match: AT1G23290.1 (Ribosomal protein L18e/L15 superfamily protein ) HSP 1 Score: 266.5 bits (680), Expect = 1.2e-71 Identity = 127/146 (86.99%), Postives = 138/146 (94.52%), Query Frame = 0
BLAST of Csor.00g157560 vs. TAIR 10
Match: AT1G12960.1 (Ribosomal protein L18e/L15 superfamily protein ) HSP 1 Score: 129.4 bits (324), Expect = 2.3e-30 Identity = 79/145 (54.48%), Postives = 84/145 (57.93%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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