Csor.00g144350 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g144350
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	DNA-binding protein S1FA-like
Location	Csor_Chr03: 9389024 .. 9390176 (+)
RNA-Seq Expression	Csor.00g144350
Synteny	Csor.00g144350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAGATTTCGAGTTCGGTGACAAAGTCCCGCCGGCCGTCAACCGCATGGTACTCCAGAGCTCCCTTGAAAGTATCGCGATGTCATTTCTTTCTTGCTTGTTTGCCGCCTAATCTGAGATTCCTGTTAATGCAGCTTATCCTTTATTTTTCTCCAACGAAGTTATGATTTGGACATGGTTCTGGGGGTTTACTTTGAGGTTAACGTATTTTGTCGATATTTGTTCGATTTCGCTCTCGAGATCTGATTGTCTCTGCAGTCGACTGTAGCAAATAATGCAGTTGAATTTTTTTTGGGATTTGCTCTTCGAGTACCCTTATAATGCAGTTGGATGTTCCGTTCCTTCTTGTATACACACCTTGCTAGGTGATTCCCTTGTATGCTTAGTTTTTAGGTGGATTTTCTTTGTTCTGATTGTGTACAATTCGGTATCAAATATCTACTTTTCTGAAGAATGGTGCTGTTTTTGCAATGTTTTTAGGATGATGCTGATGCATGTGATCATTGTGTTATTTGGAGTCGGAAAAGATTTAAAAAAACTGAACACCTTTTTTGCAATTTCCTGAAAATGGATGGAATTTTAAACTATAGGATGATACATGAATTTGTTAATTCGATCCTACATGTATGACCGAACTTGGAATTGGTGGATGGTTTAATTGTACCTATTCAGTTAATAAGAATAATAACAGTCCTGTTCAGTTCAGTTTTTCATATTGTTAGAGGATTTTCCGTGCATCTCTGATGTGGTATCCTCAGCATCTTTCGTAGCTAAGAATCAGATTAATGATTAGTTGGAGTACAAGGCTACAATTGATCTCCTTTTCGTGTTTACACATAACTTTGCTTGCATGAGATTGCTGACGAAACCAGCCAGCTTCCTTTCTGGGGTGGTTCATGAGTTCCTTCTACAATTCTTGTTGTTGTGTATGTTCTGGTTCATGGTGACGAACAGTTAATATTGGCCTTGGTGCACAGGGGAACGTGATTGGAGATGCGGATGGAAGAGGATTCAATCCAGGACTGATTGTGCTGCTCGTAGTCGGCGGGCTGCTCTTGGCTTTTCTTGTTGTGAATTATGCTCTCTACATGTATGCGCAGAAGACCCTCCCACCACAAAAGAAGAACCAGTTTCCAAGAAGAAGATGA

mRNA sequence

ATGGAAGAAGATTTCGAGTTCGGTGACAAAGTCCCGCCGGCCGTCAACCGCATGGGGAACGTGATTGGAGATGCGGATGGAAGAGGATTCAATCCAGGACTGATTGTGCTGCTCGTAGTCGGCGGGCTGCTCTTGGCTTTTCTTGTTGTGAATTATGCTCTCTACATGTATGCGCAGAAGACCCTCCCACCACAAAAGAAGAACCAGTTTCCAAGAAGAAGATGA

Coding sequence (CDS)

ATGGAAGAAGATTTCGAGTTCGGTGACAAAGTCCCGCCGGCCGTCAACCGCATGGGGAACGTGATTGGAGATGCGGATGGAAGAGGATTCAATCCAGGACTGATTGTGCTGCTCGTAGTCGGCGGGCTGCTCTTGGCTTTTCTTGTTGTGAATTATGCTCTCTACATGTATGCGCAGAAGACCCTCCCACCACAAAAGAAGAACCAGTTTCCAAGAAGAAGATGA

Protein sequence

MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQKTLPPQKKNQFPRRR

Homology

[Close]

BLAST of Csor.00g144350 vs. ExPASy Swiss-Prot
Match: Q42337 (DNA-binding protein S1FA2 OS=Arabidopsis thaliana OX=3702 GN=S1FA2 PE=3 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-10
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 26 DGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQKTLPPQKKNQFPRRR 75
          + +G NPGLIVLLV+GGLL+ FL+ NY +YMYAQK LPP+KK    +++
Sbjct: 13 EAKGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLSKKK 61

[Close]

BLAST of Csor.00g144350 vs. ExPASy Swiss-Prot
Match: P42551 (DNA-binding protein S1FA1 OS=Arabidopsis thaliana OX=3702 GN=S1FA1 PE=3 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-10
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 25 ADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQKTLPPQKKNQFPRRR 75
          A+ +G NPGLIVLLVVGG LL FL+ NY LY+YAQK LPP+KK    +++
Sbjct: 12 AEAKGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKK 61

[Close]

BLAST of Csor.00g144350 vs. ExPASy Swiss-Prot
Match: P42552 (DNA-binding protein S1FA OS=Spinacia oleracea OX=3562 GN=S1FA PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.9e-10
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 22 IGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQKTLPPQKKNQFPRRR 75
          + + + +G NPGLIVLLV+GGLLL FLV N+ LY YAQK LPP+KK    +++
Sbjct: 3  VNEVEAKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPKKKKPISKKK 55

[Close]

BLAST of Csor.00g144350 vs. ExPASy Swiss-Prot
Match: Q93VI0 (DNA-binding protein S1FA3 OS=Arabidopsis thaliana OX=3702 GN=S1FA3 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 8.6e-10
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 23 GDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQKTLPPQKKNQFPRRR 75
          G  + +G NPGLIVLLV+GGLLL FLV N+ LY YAQK LPP+KK    +++
Sbjct: 7  GKIESKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPRKKKPVSKKK 58

[Close]

BLAST of Csor.00g144350 vs. ExPASy Swiss-Prot
Match: P42553 (DNA-binding protein S1FA1 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA1 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.5e-09
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 16 NRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQKTLPPQKKNQFPRRR 75
          ++  N+I +   +G NPG IVLLVV  LL+ F V NYALYMYAQKTLPP+KK    +++
Sbjct: 3  DQSNNMIIEEVNKGLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKK 61

[Close]

BLAST of Csor.00g144350 vs. NCBI nr
Match: KAG6604436.1 (DNA-binding protein S1FA2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147 bits (371), Expect = 1.78e-44
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK 60
          MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK
Sbjct: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK 60

Query: 61 TLPPQKKNQFPRRR 74
          TLPPQKKNQFPRRR
Sbjct: 61 TLPPQKKNQFPRRR 74

[Close]

BLAST of Csor.00g144350 vs. NCBI nr
Match: XP_022926041.1 (DNA-binding protein S1FA-like [Cucurbita moschata])

HSP 1 Score: 132 bits (331), Expect = 3.51e-38
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK 60
          MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK
Sbjct: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK 60

Query: 61 TLPPQKK 67
          TLPP+KK
Sbjct: 61 TLPPKKK 67

[Close]

BLAST of Csor.00g144350 vs. NCBI nr
Match: XP_022979165.1 (DNA-binding protein S1FA-like [Cucurbita maxima])

HSP 1 Score: 124 bits (311), Expect = 3.95e-35
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK 60
          MEEDFE G+KVPPAVNRMGNVIGDADGRGFNPGLIV LVVGGLLLAFLVVNYA YMYAQK
Sbjct: 1  MEEDFELGEKVPPAVNRMGNVIGDADGRGFNPGLIVRLVVGGLLLAFLVVNYAFYMYAQK 60

Query: 61 TLPPQKK 67
          TLPP+KK
Sbjct: 61 TLPPKKK 67

[Close]

BLAST of Csor.00g144350 vs. NCBI nr
Match: XP_038881351.1 (DNA-binding protein S1FA-like [Benincasa hispida])

HSP 1 Score: 120 bits (300), Expect = 1.88e-33
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK 60
          ME+DF+FGDKVPPAVNRMGNVI DAD RGFNPGLIVLLVVGGLLLAFL  NYALYMYAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMGNVIRDADARGFNPGLIVLLVVGGLLLAFLAGNYALYMYAQK 60

Query: 61 TLPPQKK 67
          TLPP+KK
Sbjct: 61 TLPPKKK 67

[Close]

BLAST of Csor.00g144350 vs. NCBI nr
Match: XP_004143239.1 (DNA-binding protein S1FA [Cucumis sativus] >KGN48135.1 hypothetical protein Csa_003029 [Cucumis sativus])

HSP 1 Score: 117 bits (292), Expect = 3.12e-32
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK 60
          ME+DF+FGDKVPPAVNRMGNVI D + RGFNPGLIVLLVVGGLL AFLV NYALYMYAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60

Query: 61 TLPPQKK 67
          TLPP+KK
Sbjct: 61 TLPPKKK 67

[Close]

BLAST of Csor.00g144350 vs. ExPASy TrEMBL
Match: A0A6J1EDS2 (DNA-binding protein S1FA-like OS=Cucurbita moschata OX=3662 GN=LOC111433279 PE=3 SV=1)

HSP 1 Score: 132 bits (331), Expect = 1.70e-38
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK 60
          MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK
Sbjct: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK 60

Query: 61 TLPPQKK 67
          TLPP+KK
Sbjct: 61 TLPPKKK 67

[Close]

BLAST of Csor.00g144350 vs. ExPASy TrEMBL
Match: A0A6J1ISG2 (DNA-binding protein S1FA-like OS=Cucurbita maxima OX=3661 GN=LOC111478884 PE=3 SV=1)

HSP 1 Score: 124 bits (311), Expect = 1.91e-35
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK 60
          MEEDFE G+KVPPAVNRMGNVIGDADGRGFNPGLIV LVVGGLLLAFLVVNYA YMYAQK
Sbjct: 1  MEEDFELGEKVPPAVNRMGNVIGDADGRGFNPGLIVRLVVGGLLLAFLVVNYAFYMYAQK 60

Query: 61 TLPPQKK 67
          TLPP+KK
Sbjct: 61 TLPPKKK 67

[Close]

BLAST of Csor.00g144350 vs. ExPASy TrEMBL
Match: A0A0A0KEM3 (DNA-binding protein S1FA OS=Cucumis sativus OX=3659 GN=Csa_6G445000 PE=3 SV=1)

HSP 1 Score: 117 bits (292), Expect = 1.51e-32
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK 60
          ME+DF+FGDKVPPAVNRMGNVI D + RGFNPGLIVLLVVGGLL AFLV NYALYMYAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60

Query: 61 TLPPQKK 67
          TLPP+KK
Sbjct: 61 TLPPKKK 67

[Close]

BLAST of Csor.00g144350 vs. ExPASy TrEMBL
Match: A0A6J1HDT2 (DNA-binding protein S1FA-like OS=Cucurbita moschata OX=3662 GN=LOC111463054 PE=3 SV=1)

HSP 1 Score: 115 bits (289), Expect = 4.33e-32
Identity = 57/67 (85.07%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK 60
          ME+DF+FGDKVPPAVNRMGNVI +AD RGFNPGLIVLLVVGGLLLAFL  NYALY+YAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQK 60

Query: 61 TLPPQKK 67
          TLPP++K
Sbjct: 61 TLPPKRK 67

[Close]

BLAST of Csor.00g144350 vs. ExPASy TrEMBL
Match: A0A5A7TZ88 (DNA-binding protein S1FA-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00690 PE=3 SV=1)

HSP 1 Score: 114 bits (284), Expect = 2.50e-31
Identity = 57/67 (85.07%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK 60
          ME+DF+FGDKVPPAVNRM NVI D + RGFNPGLIVLLVVGGLL AFLV NYALYMYAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMRNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60

Query: 61 TLPPQKK 67
          TLPP+KK
Sbjct: 61 TLPPKKK 67

[Close]

BLAST of Csor.00g144350 vs. TAIR 10
Match: AT2G37120.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-11
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 26 DGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQKTLPPQKKNQFPRRR 75
          + +G NPGLIVLLV+GGLL+ FL+ NY +YMYAQK LPP+KK    +++
Sbjct: 13 EAKGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLSKKK 61

[Close]

BLAST of Csor.00g144350 vs. TAIR 10
Match: AT3G53370.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 65.5 bits (158), Expect = 2.1e-11
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 25 ADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQKTLPPQKKNQFPRRR 75
          A+ +G NPGLIVLLVVGG LL FL+ NY LY+YAQK LPP+KK    +++
Sbjct: 12 AEAKGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKK 61

[Close]

BLAST of Csor.00g144350 vs. TAIR 10
Match: AT3G09735.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 63.9 bits (154), Expect = 6.1e-11
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 23 GDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQKTLPPQKKNQFPRRR 75
          G  + +G NPGLIVLLV+GGLLL FLV N+ LY YAQK LPP+KK    +++
Sbjct: 7  GKIESKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPRKKKPVSKKK 58

The following BLAST results are available for this feature:

BLAST of Csor.00g144350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q42337	1.7e-10	59.18	DNA-binding protein S1FA2 OS=Arabidopsis thaliana OX=3702 GN=S1FA2 PE=3 SV=2	[more]
P42551	3.0e-10	62.00	DNA-binding protein S1FA1 OS=Arabidopsis thaliana OX=3702 GN=S1FA1 PE=3 SV=2	[more]
P42552	3.9e-10	56.60	DNA-binding protein S1FA OS=Spinacia oleracea OX=3562 GN=S1FA PE=3 SV=1	[more]
Q93VI0	8.6e-10	59.62	DNA-binding protein S1FA3 OS=Arabidopsis thaliana OX=3702 GN=S1FA3 PE=3 SV=1	[more]
P42553	2.5e-09	54.24	DNA-binding protein S1FA1 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA1 PE=3...	[more]

BLAST of Csor.00g144350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604436.1	1.78e-44	100.00	DNA-binding protein S1FA2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022926041.1	3.51e-38	98.51	DNA-binding protein S1FA-like [Cucurbita moschata]	[more]
XP_022979165.1	3.95e-35	92.54	DNA-binding protein S1FA-like [Cucurbita maxima]	[more]
XP_038881351.1	1.88e-33	89.55	DNA-binding protein S1FA-like [Benincasa hispida]	[more]
XP_004143239.1	3.12e-32	86.57	DNA-binding protein S1FA [Cucumis sativus] >KGN48135.1 hypothetical protein Csa_...	[more]

BLAST of Csor.00g144350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EDS2	1.70e-38	98.51	DNA-binding protein S1FA-like OS=Cucurbita moschata OX=3662 GN=LOC111433279 PE=3...	[more]
A0A6J1ISG2	1.91e-35	92.54	DNA-binding protein S1FA-like OS=Cucurbita maxima OX=3661 GN=LOC111478884 PE=3 S...	[more]
A0A0A0KEM3	1.51e-32	86.57	DNA-binding protein S1FA OS=Cucumis sativus OX=3659 GN=Csa_6G445000 PE=3 SV=1	[more]
A0A6J1HDT2	4.33e-32	85.07	DNA-binding protein S1FA-like OS=Cucurbita moschata OX=3662 GN=LOC111463054 PE=3...	[more]
A0A5A7TZ88	2.50e-31	85.07	DNA-binding protein S1FA-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of Csor.00g144350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37120.1	1.2e-11	59.18	S1FA-like DNA-binding protein	[more]
AT3G53370.1	2.1e-11	62.00	S1FA-like DNA-binding protein	[more]
AT3G09735.1	6.1e-11	59.62	S1FA-like DNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006779	DNA binding protein S1FA	PFAM	PF04689	S1FA	coord: 25..68 e-value: 8.7E-23 score: 80.3
IPR006779	DNA binding protein S1FA	PANTHER	PTHR35298	DNA-BINDING PROTEIN S1FA2	coord: 3..69
None	No IPR available	PANTHER	PTHR35298:SF9	DNA-BINDING PROTEIN S1FA1-RELATED	coord: 3..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g144350.m01	Csor.00g144350.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding