Csor.00g144050 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g144050
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RNA polymerase sigma factor
Location	Csor_Chr03: 9236287 .. 9237235 (-)
RNA-Seq Expression	Csor.00g144050
Synteny	Csor.00g144050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAGAATCCCACAGTCATTGCAGCAAACTGTATGGGCTGACCAAGATACAACTTTTCAGGTATCTTTCACTTTTTCTCTCGAGTTTTAACCCAATAGAATAGAACAGAAAATTAAACAAGAACAGGTTATGACTCTAAACATACTGCTTCCGGAATGTAAGATTTTAAATTTTTACCTTCCAAAAAGCTTGCAAGTCTGGTACTACTTTATTGTAAATGTGGCTCAGAGTAACGGAACCGTGCAGCTTTGCTAAAGGCTGGGTTACCGATGAAATTCGCTTTATAACGGTATTATCATTCGACAGGGAAACCGTTTTAAATGTAAAGAGACTAATGATGTCAGGAATAGAGATGAATGAGAGATGTGTATCCATTATTGAAAATCCATCTTGCTAAGTTCGATCATATGTCTGTTGTCCAAGCTTTGGTATTAGTTAGTTTGCCACTGGTTAGTGATTATAAGTTGCTTTGCATGTATCATTTGAAGATACATTACAGAACTGGTTGCCAACGTAGAAAATGCGTGGATATATTTGATTTTATCGGGCTCGTTAGATACATAGAGTCGATCCGTTTAGGCAGATGATATATTCATTCTTAACATCATGCTGACGTTCTCTACCATCATCTGAGAATGCATTCTGAATTATATTACAGGAAATAACTGCAGACTCTGAAGTTGATACCCCGGATATCAGTGTAGAGAGGGAGCTTATGCGAAGGCACATACGGAATCTCCTTAACGTTCTCAATTCGAAAGAGAGACAGATAATCAGATTACGATTTGGTATCGAAGATGGTAAAGAGAAAACACTGTTGGAAATTGGCAACATGTTTGGTTTGTCCAAGGAGAGGGTGCGACAGCTTGAAAGCCGAGCGTTATACAAGCTAAAACGATGCTGCAACAGCCAAGGGCTTGGCGCATACACCAATTTACTGATATGA

mRNA sequence

ATGTCTAGAATCCCACAGTCATTGCAGCAAACTGTATGGGCTGACCAAGATACAACTTTTCAGGAAATAACTGCAGACTCTGAAGTTGATACCCCGGATATCAGTGTAGAGAGGGAGCTTATGCGAAGGCACATACGGAATCTCCTTAACGTTCTCAATTCGAAAGAGAGACAGATAATCAGATTACGATTTGGTATCGAAGATGGTAAAGAGAAAACACTGTTGGAAATTGGCAACATGTTTGGTTTGTCCAAGGAGAGGGTGCGACAGCTTGAAAGCCGAGCGTTATACAAGCTAAAACGATGCTGCAACAGCCAAGGGCTTGGCGCATACACCAATTTACTGATATGA

Coding sequence (CDS)

ATGTCTAGAATCCCACAGTCATTGCAGCAAACTGTATGGGCTGACCAAGATACAACTTTTCAGGAAATAACTGCAGACTCTGAAGTTGATACCCCGGATATCAGTGTAGAGAGGGAGCTTATGCGAAGGCACATACGGAATCTCCTTAACGTTCTCAATTCGAAAGAGAGACAGATAATCAGATTACGATTTGGTATCGAAGATGGTAAAGAGAAAACACTGTTGGAAATTGGCAACATGTTTGGTTTGTCCAAGGAGAGGGTGCGACAGCTTGAAAGCCGAGCGTTATACAAGCTAAAACGATGCTGCAACAGCCAAGGGCTTGGCGCATACACCAATTTACTGATATGA

Protein sequence

MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLLI

Homology

[Close]

BLAST of Csor.00g144050 vs. ExPASy Swiss-Prot
Match: Q9LD95 (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-36
Identity = 75/115 (65.22%), Postives = 98/115 (85.22%), Query Frame = 0


Query: 2   SRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIR 61
           +R P S+QQ +W+DQDTTFQEIT DS ++TP +SV ++LMR H+RNLLNVL+ KER+II+
Sbjct: 433 TRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIK 492

Query: 62  LRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLLI 117
           LRFGI+ GK+++L EIG ++GLSKERVRQLESRALY+LK+  NS GL AY +LL+
Sbjct: 493 LRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAYADLLV 547

[Close]

BLAST of Csor.00g144050 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 84.7 bits (208), Expect = 7.4e-16
Identity = 47/107 (43.93%), Postives = 69/107 (64.49%), Query Frame = 0


Query: 5   PQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRF 64
           P+SL Q +  +Q+    E+ AD E  T +  + +E MR+ +  +L+ L ++E+Q+IR RF
Sbjct: 461 PRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRF 520

Query: 65  GIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAY 112
           G+EDG+ KTL EIG M G+S+ERVRQ+ES A  KLK    +  L  Y
Sbjct: 521 GMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQY 567

[Close]

BLAST of Csor.00g144050 vs. ExPASy Swiss-Prot
Match: P33118 (RNA polymerase sigma factor SigB OS=Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis) OX=257309 GN=sigB PE=3 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 1.8e-14
Identity = 44/110 (40.00%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 2   SRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIR 61
           SR P SL   V AD++    +   DSE    + +V   L    IR +L+ L  +E+ +IR
Sbjct: 218 SRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASLRHSDIRTVLDTLEQREQDVIR 277

Query: 62  LRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAY 112
           LR+G++DG  +TL +IG  FGLS+ERVRQ+E   + KL+    ++ L AY
Sbjct: 278 LRYGLDDGVPRTLDQIGRQFGLSRERVRQIEREVMSKLRDGARAEKLRAY 327

[Close]

BLAST of Csor.00g144050 vs. ExPASy Swiss-Prot
Match: P52322 (RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.8e-14
Identity = 40/100 (40.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 2   SRIPQSLQQTVWADQDTTFQE-ITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII 61
           +++P SL+  +  ++D+   + I AD E  TP+  V + L+R  + N+L+ L+ +ER ++
Sbjct: 306 AQLPISLETPIGKEEDSRLGDFIEADGE--TPEDEVSKNLLREDLENVLDTLSPRERDVL 365

Query: 62  RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLK 101
           RLR+G++DG+ KTL EIG +F +++ER+RQ+E++AL KL+
Sbjct: 366 RLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403

[Close]

BLAST of Csor.00g144050 vs. ExPASy Swiss-Prot
Match: P74565 (RNA polymerase sigma factor SigA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sigA PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.8e-14
Identity = 40/100 (40.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 2   SRIPQSLQQTVWADQDTTFQE-ITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII 61
           +++P SL+  +  ++D+   + I AD E  TP+  V + L+R  + N+L+ L+ +ER ++
Sbjct: 315 AQLPISLETPIGKEEDSRLGDFIEADGE--TPEDEVSKNLLREDLENVLDTLSPRERDVL 374

Query: 62  RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLK 101
           RLR+G++DG+ KTL EIG +F +++ER+RQ+E++AL KL+
Sbjct: 375 RLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 412

[Close]

BLAST of Csor.00g144050 vs. NCBI nr
Match: KAG6604406.1 (RNA polymerase sigma factor sigF, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 224 bits (572), Expect = 8.02e-74
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII 60
           MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII
Sbjct: 1   MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII 60

Query: 61  RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLLI 116
           RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLLI
Sbjct: 61  RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLLI 116

[Close]

BLAST of Csor.00g144050 vs. NCBI nr
Match: KAG7034557.1 (RNA polymerase sigma factor sigF, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 224 bits (572), Expect = 9.82e-69
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII 60
           MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII
Sbjct: 401 MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII 460

Query: 61  RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLLI 116
           RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLLI
Sbjct: 461 RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLLI 516

[Close]

BLAST of Csor.00g144050 vs. NCBI nr
Match: XP_022978801.1 (RNA polymerase sigma factor sigF, chloroplastic [Cucurbita maxima])

HSP 1 Score: 224 bits (572), Expect = 2.11e-66
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII 60
           MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII
Sbjct: 712 MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII 771

Query: 61  RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLLI 116
           RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLLI
Sbjct: 772 RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLLI 827

[Close]

BLAST of Csor.00g144050 vs. NCBI nr
Match: XP_022926086.1 (RNA polymerase sigma factor sigF, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 224 bits (572), Expect = 2.11e-66
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII 60
           MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII
Sbjct: 712 MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII 771

Query: 61  RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLLI 116
           RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLLI
Sbjct: 772 RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLLI 827

[Close]

BLAST of Csor.00g144050 vs. NCBI nr
Match: XP_023543698.1 (RNA polymerase sigma factor sigF, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224 bits (572), Expect = 2.14e-66
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII 60
           MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII
Sbjct: 713 MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII 772

Query: 61  RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLLI 116
           RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLLI
Sbjct: 773 RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLLI 828

[Close]

BLAST of Csor.00g144050 vs. ExPASy TrEMBL
Match: A0A6J1IP18 (RNA polymerase sigma factor sigF, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111478657 PE=3 SV=1)

HSP 1 Score: 224 bits (572), Expect = 1.02e-66
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII 60
           MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII
Sbjct: 712 MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII 771

Query: 61  RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLLI 116
           RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLLI
Sbjct: 772 RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLLI 827

[Close]

BLAST of Csor.00g144050 vs. ExPASy TrEMBL
Match: A0A6J1EDW3 (RNA polymerase sigma factor sigF, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111433307 PE=3 SV=1)

HSP 1 Score: 224 bits (572), Expect = 1.02e-66
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII 60
           MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII
Sbjct: 712 MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII 771

Query: 61  RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLLI 116
           RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLLI
Sbjct: 772 RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLLI 827

[Close]

BLAST of Csor.00g144050 vs. ExPASy TrEMBL
Match: A0A5D3CAF4 (RNA polymerase sigma factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00200 PE=3 SV=1)

HSP 1 Score: 205 bits (521), Expect = 1.90e-61
Identity = 103/115 (89.57%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII 60
           MSRIP+SLQQ VWADQDTT+QEITADSEVDTPD+SVERELMRRHIRNLL++L+ KER+II
Sbjct: 403 MSRIPRSLQQPVWADQDTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRII 462

Query: 61  RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLL 115
           RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLE+RALYKLKRCCNSQGLGAY +LL
Sbjct: 463 RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLL 517

[Close]

BLAST of Csor.00g144050 vs. ExPASy TrEMBL
Match: A0A0A0KEQ6 (RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G446410 PE=3 SV=1)

HSP 1 Score: 203 bits (517), Expect = 1.79e-60
Identity = 102/115 (88.70%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII 60
           MSRIP+SLQQ VWADQ+TTFQEITADSEVDTPD+SVERELMRRHIRNLL++L+ KER+II
Sbjct: 447 MSRIPRSLQQPVWADQETTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRII 506

Query: 61  RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLL 115
           RLRFGIEDG+EKTLLEIGNMFGLSKERVRQLE+RALYKLKRCCNSQGLGAY +LL
Sbjct: 507 RLRFGIEDGREKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLL 561

[Close]

BLAST of Csor.00g144050 vs. ExPASy TrEMBL
Match: A0A1S4E4I4 (RNA polymerase sigma factor sigF, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500810 PE=3 SV=1)

HSP 1 Score: 205 bits (521), Expect = 1.97e-59
Identity = 103/115 (89.57%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQII 60
           MSRIP+SLQQ VWADQDTT+QEITADSEVDTPD+SVERELMRRHIRNLL++L+ KER+II
Sbjct: 716 MSRIPRSLQQPVWADQDTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRII 775

Query: 61  RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLL 115
           RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLE+RALYKLKRCCNSQGLGAY +LL
Sbjct: 776 RLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLL 830

[Close]

BLAST of Csor.00g144050 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 153.7 bits (387), Expect = 9.2e-38
Identity = 75/115 (65.22%), Postives = 98/115 (85.22%), Query Frame = 0


Query: 2   SRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIR 61
           +R P S+QQ +W+DQDTTFQEIT DS ++TP +SV ++LMR H+RNLLNVL+ KER+II+
Sbjct: 433 TRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIK 492

Query: 62  LRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLLI 117
           LRFGI+ GK+++L EIG ++GLSKERVRQLESRALY+LK+  NS GL AY +LL+
Sbjct: 493 LRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAYADLLV 547

[Close]

BLAST of Csor.00g144050 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 84.7 bits (208), Expect = 5.2e-17
Identity = 47/107 (43.93%), Postives = 69/107 (64.49%), Query Frame = 0


Query: 5   PQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRF 64
           P+SL Q +  +Q+    E+ AD E  T +  + +E MR+ +  +L+ L ++E+Q+IR RF
Sbjct: 461 PRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRF 520

Query: 65  GIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAY 112
           G+EDG+ KTL EIG M G+S+ERVRQ+ES A  KLK    +  L  Y
Sbjct: 521 GMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQY 567

[Close]

BLAST of Csor.00g144050 vs. TAIR 10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C )

HSP 1 Score: 72.4 bits (176), Expect = 2.7e-13
Identity = 38/96 (39.58%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 18  TTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEI 77
           T F E T D+ +++P+ +V R+  RR I +LL  L  +E+Q++ LR+G++D + K+L EI
Sbjct: 475 TKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEI 534

Query: 78  GNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTN 114
           G +  +SKE +R++E RA+ KL+   N++ L  Y N
Sbjct: 535 GKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYLN 570

[Close]

BLAST of Csor.00g144050 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-09
Identity = 39/110 (35.45%), Postives = 55/110 (50.00%), Query Frame = 0


Query: 2   SRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIR 61
           SR P SL +    +   T QEI    +   P+  V+RE M+  I  LL  L ++E +++ 
Sbjct: 305 SRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLG 364

Query: 62  LRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAY 112
           L FG+      +  EIG    LS+ERVRQ+   AL KL+   N   L  Y
Sbjct: 365 LYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 414

[Close]

BLAST of Csor.00g144050 vs. TAIR 10
Match: AT5G24120.1 (sigma factor E )

HSP 1 Score: 43.9 bits (102), Expect = 1.0e-04
Identity = 24/61 (39.34%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 40  LMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKL 99
           L+R  + ++L+ L  KE  +IR R+G++   ++TL EI     +S+E VR+ E +AL KL
Sbjct: 444 LLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKL 503

Query: 100 K 101
           K
Sbjct: 504 K 504

The following BLAST results are available for this feature:

BLAST of Csor.00g144050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LD95	1.3e-36	65.22	RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
O22056	7.4e-16	43.93	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]
P33118	1.8e-14	40.00	RNA polymerase sigma factor SigB OS=Corynebacterium diphtheriae (strain ATCC 700...	[more]
P52322	1.8e-14	40.00	RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 ...	[more]
P74565	1.8e-14	40.00	RNA polymerase sigma factor SigA OS=Synechocystis sp. (strain PCC 6803 / Kazusa)...	[more]

BLAST of Csor.00g144050 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604406.1	8.02e-74	100.00	RNA polymerase sigma factor sigF, chloroplastic, partial [Cucurbita argyrosperma...	[more]
KAG7034557.1	9.82e-69	100.00	RNA polymerase sigma factor sigF, chloroplastic [Cucurbita argyrosperma subsp. a...	[more]
XP_022978801.1	2.11e-66	100.00	RNA polymerase sigma factor sigF, chloroplastic [Cucurbita maxima]	[more]
XP_022926086.1	2.11e-66	100.00	RNA polymerase sigma factor sigF, chloroplastic-like [Cucurbita moschata]	[more]
XP_023543698.1	2.14e-66	100.00	RNA polymerase sigma factor sigF, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g144050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IP18	1.02e-66	100.00	RNA polymerase sigma factor sigF, chloroplastic OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1EDW3	1.02e-66	100.00	RNA polymerase sigma factor sigF, chloroplastic-like OS=Cucurbita moschata OX=36...	[more]
A0A5D3CAF4	1.90e-61	89.57	RNA polymerase sigma factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A0A0KEQ6	1.79e-60	88.70	RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G446410 PE=3 SV=1	[more]
A0A1S4E4I4	1.97e-59	89.57	RNA polymerase sigma factor sigF, chloroplastic isoform X2 OS=Cucumis melo OX=36...	[more]

BLAST of Csor.00g144050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36990.1	9.2e-38	65.22	RNApolymerase sigma-subunit F	[more]
AT1G08540.1	5.2e-17	43.93	RNApolymerase sigma subunit 2	[more]
AT3G53920.1	2.7e-13	39.58	RNApolymerase sigma-subunit C	[more]
AT5G13730.1	2.4e-09	35.45	sigma factor 4	[more]
AT5G24120.1	1.0e-04	39.34	sigma factor E	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 52..64 score: 41.59 coord: 73..88 score: 49.64 coord: 88..99 score: 54.09
IPR000943	RNA polymerase sigma-70	PROSITE	PS00716	SIGMA70_2	coord: 73..99
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 48..100 e-value: 9.7E-19 score: 66.6
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 35..115 e-value: 6.1E-25 score: 88.7
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 15..102 e-value: 1.3E-14 score: 52.1
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 2..116
None	No IPR available	PANTHER	PTHR30603:SF50	RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED	coord: 2..116
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 42..100 e-value: 1.10502E-12 score: 55.9586
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 13..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g144050.m01	Csor.00g144050.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity