Csor.00g144050 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTAGAATCCCACAGTCATTGCAGCAAACTGTATGGGCTGACCAAGATACAACTTTTCAGGTATCTTTCACTTTTTCTCTCGAGTTTTAACCCAATAGAATAGAACAGAAAATTAAACAAGAACAGGTTATGACTCTAAACATACTGCTTCCGGAATGTAAGATTTTAAATTTTTACCTTCCAAAAAGCTTGCAAGTCTGGTACTACTTTATTGTAAATGTGGCTCAGAGTAACGGAACCGTGCAGCTTTGCTAAAGGCTGGGTTACCGATGAAATTCGCTTTATAACGGTATTATCATTCGACAGGGAAACCGTTTTAAATGTAAAGAGACTAATGATGTCAGGAATAGAGATGAATGAGAGATGTGTATCCATTATTGAAAATCCATCTTGCTAAGTTCGATCATATGTCTGTTGTCCAAGCTTTGGTATTAGTTAGTTTGCCACTGGTTAGTGATTATAAGTTGCTTTGCATGTATCATTTGAAGATACATTACAGAACTGGTTGCCAACGTAGAAAATGCGTGGATATATTTGATTTTATCGGGCTCGTTAGATACATAGAGTCGATCCGTTTAGGCAGATGATATATTCATTCTTAACATCATGCTGACGTTCTCTACCATCATCTGAGAATGCATTCTGAATTATATTACAGGAAATAACTGCAGACTCTGAAGTTGATACCCCGGATATCAGTGTAGAGAGGGAGCTTATGCGAAGGCACATACGGAATCTCCTTAACGTTCTCAATTCGAAAGAGAGACAGATAATCAGATTACGATTTGGTATCGAAGATGGTAAAGAGAAAACACTGTTGGAAATTGGCAACATGTTTGGTTTGTCCAAGGAGAGGGTGCGACAGCTTGAAAGCCGAGCGTTATACAAGCTAAAACGATGCTGCAACAGCCAAGGGCTTGGCGCATACACCAATTTACTGATATGA ATGTCTAGAATCCCACAGTCATTGCAGCAAACTGTATGGGCTGACCAAGATACAACTTTTCAGGAAATAACTGCAGACTCTGAAGTTGATACCCCGGATATCAGTGTAGAGAGGGAGCTTATGCGAAGGCACATACGGAATCTCCTTAACGTTCTCAATTCGAAAGAGAGACAGATAATCAGATTACGATTTGGTATCGAAGATGGTAAAGAGAAAACACTGTTGGAAATTGGCAACATGTTTGGTTTGTCCAAGGAGAGGGTGCGACAGCTTGAAAGCCGAGCGTTATACAAGCTAAAACGATGCTGCAACAGCCAAGGGCTTGGCGCATACACCAATTTACTGATATGA ATGTCTAGAATCCCACAGTCATTGCAGCAAACTGTATGGGCTGACCAAGATACAACTTTTCAGGAAATAACTGCAGACTCTGAAGTTGATACCCCGGATATCAGTGTAGAGAGGGAGCTTATGCGAAGGCACATACGGAATCTCCTTAACGTTCTCAATTCGAAAGAGAGACAGATAATCAGATTACGATTTGGTATCGAAGATGGTAAAGAGAAAACACTGTTGGAAATTGGCAACATGTTTGGTTTGTCCAAGGAGAGGGTGCGACAGCTTGAAAGCCGAGCGTTATACAAGCTAAAACGATGCTGCAACAGCCAAGGGCTTGGCGCATACACCAATTTACTGATATGA MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTNLLI Homology
BLAST of Csor.00g144050 vs. ExPASy Swiss-Prot
Match: Q9LD95 (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 1.3e-36 Identity = 75/115 (65.22%), Postives = 98/115 (85.22%), Query Frame = 0
BLAST of Csor.00g144050 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2) HSP 1 Score: 84.7 bits (208), Expect = 7.4e-16 Identity = 47/107 (43.93%), Postives = 69/107 (64.49%), Query Frame = 0
BLAST of Csor.00g144050 vs. ExPASy Swiss-Prot
Match: P33118 (RNA polymerase sigma factor SigB OS=Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis) OX=257309 GN=sigB PE=3 SV=2) HSP 1 Score: 80.1 bits (196), Expect = 1.8e-14 Identity = 44/110 (40.00%), Postives = 65/110 (59.09%), Query Frame = 0
BLAST of Csor.00g144050 vs. ExPASy Swiss-Prot
Match: P52322 (RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 1.8e-14 Identity = 40/100 (40.00%), Postives = 72/100 (72.00%), Query Frame = 0
BLAST of Csor.00g144050 vs. ExPASy Swiss-Prot
Match: P74565 (RNA polymerase sigma factor SigA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sigA PE=3 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 1.8e-14 Identity = 40/100 (40.00%), Postives = 72/100 (72.00%), Query Frame = 0
BLAST of Csor.00g144050 vs. NCBI nr
Match: KAG6604406.1 (RNA polymerase sigma factor sigF, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 224 bits (572), Expect = 8.02e-74 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
BLAST of Csor.00g144050 vs. NCBI nr
Match: KAG7034557.1 (RNA polymerase sigma factor sigF, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 224 bits (572), Expect = 9.82e-69 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
BLAST of Csor.00g144050 vs. NCBI nr
Match: XP_022978801.1 (RNA polymerase sigma factor sigF, chloroplastic [Cucurbita maxima]) HSP 1 Score: 224 bits (572), Expect = 2.11e-66 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
BLAST of Csor.00g144050 vs. NCBI nr
Match: XP_022926086.1 (RNA polymerase sigma factor sigF, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 224 bits (572), Expect = 2.11e-66 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
BLAST of Csor.00g144050 vs. NCBI nr
Match: XP_023543698.1 (RNA polymerase sigma factor sigF, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 224 bits (572), Expect = 2.14e-66 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
BLAST of Csor.00g144050 vs. ExPASy TrEMBL
Match: A0A6J1IP18 (RNA polymerase sigma factor sigF, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111478657 PE=3 SV=1) HSP 1 Score: 224 bits (572), Expect = 1.02e-66 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
BLAST of Csor.00g144050 vs. ExPASy TrEMBL
Match: A0A6J1EDW3 (RNA polymerase sigma factor sigF, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111433307 PE=3 SV=1) HSP 1 Score: 224 bits (572), Expect = 1.02e-66 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
BLAST of Csor.00g144050 vs. ExPASy TrEMBL
Match: A0A5D3CAF4 (RNA polymerase sigma factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00200 PE=3 SV=1) HSP 1 Score: 205 bits (521), Expect = 1.90e-61 Identity = 103/115 (89.57%), Postives = 112/115 (97.39%), Query Frame = 0
BLAST of Csor.00g144050 vs. ExPASy TrEMBL
Match: A0A0A0KEQ6 (RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G446410 PE=3 SV=1) HSP 1 Score: 203 bits (517), Expect = 1.79e-60 Identity = 102/115 (88.70%), Postives = 112/115 (97.39%), Query Frame = 0
BLAST of Csor.00g144050 vs. ExPASy TrEMBL
Match: A0A1S4E4I4 (RNA polymerase sigma factor sigF, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500810 PE=3 SV=1) HSP 1 Score: 205 bits (521), Expect = 1.97e-59 Identity = 103/115 (89.57%), Postives = 112/115 (97.39%), Query Frame = 0
BLAST of Csor.00g144050 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F ) HSP 1 Score: 153.7 bits (387), Expect = 9.2e-38 Identity = 75/115 (65.22%), Postives = 98/115 (85.22%), Query Frame = 0
BLAST of Csor.00g144050 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 ) HSP 1 Score: 84.7 bits (208), Expect = 5.2e-17 Identity = 47/107 (43.93%), Postives = 69/107 (64.49%), Query Frame = 0
BLAST of Csor.00g144050 vs. TAIR 10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C ) HSP 1 Score: 72.4 bits (176), Expect = 2.7e-13 Identity = 38/96 (39.58%), Postives = 64/96 (66.67%), Query Frame = 0
BLAST of Csor.00g144050 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 ) HSP 1 Score: 59.3 bits (142), Expect = 2.4e-09 Identity = 39/110 (35.45%), Postives = 55/110 (50.00%), Query Frame = 0
BLAST of Csor.00g144050 vs. TAIR 10
Match: AT5G24120.1 (sigma factor E ) HSP 1 Score: 43.9 bits (102), Expect = 1.0e-04 Identity = 24/61 (39.34%), Postives = 39/61 (63.93%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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