Csor.00g137350 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g137350
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionMethyltransferase
LocationCsor_Chr12: 766816 .. 768331 (+)
RNA-Seq ExpressionCsor.00g137350
SyntenyCsor.00g137350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGAAGGCATAGAAGATTACTCCCACCAAATTGGAGGGATGATTGGGCTAATAAATGCATCTAATATCATACAGGAGTAAGTAAATTTATATTTAGAGCCAGCAAACAGCAAACTTAACTCACAGATCATTGGTCCTCTCACCAGTCCAATATCAGGGTTGTCATTCGTGAGATCCCACATCGATTGGGAGGGGAACGAAACATTTCTTATAAAGATGTGGAAACTTTTCCCTACTAGATGTGTTTTAAAAAAACCTTGAGGGGAAGCCCAGAAGAAAAAGATCAAAGAGGATAATATCTGCTAGTGGTGGGCTTGGGCTGTTACAAATGGTATAAGAGCCAGACATCTGGTGGTGCACCAACGAGAACGCTAGGTCTCCAAAGAAGGTGGATTGTGAGATCTAACATCGATTGGAGAGGGAAACAAAGCATTCCTTATAAGGGTGTGGAAACCTCTCCTTACCAAACGCATTTTAAAAACCTTGAGGGGAACCTCAAAAGGGAAAGCCCAAATAGGACAATATCTACTCGTGGTGAGCATGAGCTGTTACTGCTTTCTCCACAACAAAACCAATCAAAAAAGATGGAACGTTATTCGTTATTCGTGAGTTTACTGAGAGCCTGATCATAAAATTTGTTTATTGCCATGTTATTGTGATCGTTTGCTATACTCTGCTTGTAATCTTAGTAACTCTGGCTCAGGTCCATCCCTATGTAGCGAAGGCCATTGTGGCGAATCTCAATATTATCAACCTATTGAAGACTGCAATCGAACAAAAAGCTCTAGGTGGGTACTTGTGGAAGAGAGGACACGGCCTTCTAGAGCTAAAATAAACAAGAGTGAACTTGAAGTATATGGTAATGATTTTCTTCTGTTATTGATTATTAAGGTACTTAGGATGAAGTTCTTACTTCCCCACTGATATTCTCAGATCACCTGAAAGAGACCTGATGATGACTATCCTTCGCCCTCATATAACATGCTACGTGTCACAATTGCACTATTACAACAGTAGGACAGCGATTGTGTGACATTTGTTCTAACCCAGCGAACATGTCAGCTATGTGAACACTTCGAGGACAATAACGGCGTATGCTCAAGCCTGGATCATGTTTGAGAGAAATGTACATTTTGGGGCATTTGATAGCATATAACTTAAGTAAACAACGACTTTGATAACATATAACCTAGGTAGGAAGATTTGAAAACTAGTCACATCCTCGCATGGTACATTTTGGGACATTTTAGCCCAAGTGGGCGTAGACATGATTTTGTGACTAACAATATTAATAGAAACCTATCTAACATGAAAATAAGTAAAAATGGTATTTAGAACGAGCATGCAGCCTTGGACAACACGTCTTGGAAAAACATGATCAAGGCATCTAACATGTAGTCATAGGTAACACGTCTTGAACAAGCATAATGTTTCATATGATATGGTGCATGCAGATGGTATCTTGTCCCCGTCGAAGCTCCTCAACGTCGCTGCATCATGCTTCATCTATTAA

mRNA sequence

ATGTCTGAAGGCATAGAAGATTACTCCCACCAAATTGGAGGGATGATTGGGCTAATAAATGCATCTAATATCATACAGGACGAAGGCCATTGTGGCGAATCTCAATATTATCAACCTATTGAAGACTGCAATCGAACAAAAAGCTCTAGGTGGGTACTTGTGGAAGAGAGGACACGGCCTTCTAGAGCTAAAATAAACAAGAGTGAACTTGAAGTATATGATGGTATCTTGTCCCCGTCGAAGCTCCTCAACGTCGCTGCATCATGCTTCATCTATTAA

Coding sequence (CDS)

ATGTCTGAAGGCATAGAAGATTACTCCCACCAAATTGGAGGGATGATTGGGCTAATAAATGCATCTAATATCATACAGGACGAAGGCCATTGTGGCGAATCTCAATATTATCAACCTATTGAAGACTGCAATCGAACAAAAAGCTCTAGGTGGGTACTTGTGGAAGAGAGGACACGGCCTTCTAGAGCTAAAATAAACAAGAGTGAACTTGAAGTATATGATGGTATCTTGTCCCCGTCGAAGCTCCTCAACGTCGCTGCATCATGCTTCATCTATTAA

Protein sequence

MSEGIEDYSHQIGGMIGLINASNIIQDEGHCGESQYYQPIEDCNRTKSSRWVLVEERTRPSRAKINKSELEVYDGILSPSKLLNVAASCFIY
Homology
[Close]
BLAST of Csor.00g137350 vs. NCBI nr
Match: KAG6585297.1 (putative pectin methyltransferase QUA2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189 bits (480), Expect = 1.50e-60
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MSEGIEDYSHQIGGMIGLINASNIIQDEGHCGESQYYQPIEDCNRTKSSRWVLVEERTRP 60
          MSEGIEDYSHQIGGMIGLINASNIIQDEGHCGESQYYQPIEDCNRTKSSRWVLVEERTRP
Sbjct: 1  MSEGIEDYSHQIGGMIGLINASNIIQDEGHCGESQYYQPIEDCNRTKSSRWVLVEERTRP 60

Query: 61 SRAKINKSELEVYDGILSPSKLLNVAASCFIY 92
          SRAKINKSELEVYDGILSPSKLLNVAASCFIY
Sbjct: 61 SRAKINKSELEVYDGILSPSKLLNVAASCFIY 92

[Close]
BLAST of Csor.00g137350 vs. NCBI nr
Match: XP_022132200.1 (probable pectin methyltransferase QUA2 [Momordica charantia])

HSP 1 Score: 65.5 bits (158), Expect = 6.35e-10
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 28  EGHCGESQYYQPIEDC-NRTKSSRWVLVEERTRPSRAKINKSELEVY 73
           +GH  ES YY+P+EDC   TKSSRW+ VEERT PSRA +NKSEL VY
Sbjct: 437 KGHYVESPYYRPLEDCIGGTKSSRWIPVEERTWPSRANLNKSELAVY 483

[Close]
BLAST of Csor.00g137350 vs. NCBI nr
Match: XP_022997075.1 (probable pectin methyltransferase QUA2 [Cucurbita maxima])

HSP 1 Score: 59.7 bits (143), Expect = 6.81e-08
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 27  DEGHCGESQYYQPIEDC-NRTKSSRWVLVEERTRPSRAKINKSELEVY 73
           ++GH  ES YY+P+E+C   TKSSRW  VE+RT PSRA +NKS+L VY
Sbjct: 415 NKGHYVESPYYRPLENCIGGTKSSRWFPVEQRTWPSRANLNKSKLAVY 462

[Close]
BLAST of Csor.00g137350 vs. NCBI nr
Match: KAG7029633.1 (putative pectin methyltransferase QUA2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 59.3 bits (142), Expect = 9.04e-08
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 28  EGHCGESQYYQPIEDC-NRTKSSRWVLVEERTRPSRAKINKSELEVY 73
           +GH  ES YY+P+E+C   TKSSRW  VE+RT PSRA +NKS+L VY
Sbjct: 211 KGHYVESPYYRPLENCIGGTKSSRWFPVEQRTWPSRANLNKSKLAVY 257

[Close]
BLAST of Csor.00g137350 vs. NCBI nr
Match: KAG6598691.1 (putative pectin methyltransferase QUA2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.3 bits (142), Expect = 9.31e-08
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 28  EGHCGESQYYQPIEDC-NRTKSSRWVLVEERTRPSRAKINKSELEVY 73
           +GH  ES YY+P+E+C   TKSSRW  VE+RT PSRA +NKS+L VY
Sbjct: 413 KGHYVESPYYRPLENCIGGTKSSRWFPVEQRTWPSRANLNKSKLAVY 459

[Close]
BLAST of Csor.00g137350 vs. ExPASy TrEMBL
Match: A0A6J1BRS5 (Methyltransferase OS=Momordica charantia OX=3673 GN=LOC111005117 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.07e-10
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 28  EGHCGESQYYQPIEDC-NRTKSSRWVLVEERTRPSRAKINKSELEVY 73
           +GH  ES YY+P+EDC   TKSSRW+ VEERT PSRA +NKSEL VY
Sbjct: 437 KGHYVESPYYRPLEDCIGGTKSSRWIPVEERTWPSRANLNKSELAVY 483

[Close]
BLAST of Csor.00g137350 vs. ExPASy TrEMBL
Match: A0A6J1K8J6 (Methyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111492106 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.30e-08
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 27  DEGHCGESQYYQPIEDC-NRTKSSRWVLVEERTRPSRAKINKSELEVY 73
           ++GH  ES YY+P+E+C   TKSSRW  VE+RT PSRA +NKS+L VY
Sbjct: 415 NKGHYVESPYYRPLENCIGGTKSSRWFPVEQRTWPSRANLNKSKLAVY 462

[Close]
BLAST of Csor.00g137350 vs. ExPASy TrEMBL
Match: A0A6J1HDD0 (Methyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111462579 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.51e-08
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 28  EGHCGESQYYQPIEDC-NRTKSSRWVLVEERTRPSRAKINKSELEVY 73
           +GH  ES YY+P+E+C   TKSSRW  VE+RT PSRA +NKS+L VY
Sbjct: 416 KGHYVESPYYRPLENCIGGTKSSRWFPVEQRTWPSRANLNKSKLAVY 462

[Close]
BLAST of Csor.00g137350 vs. ExPASy TrEMBL
Match: E0CRL6 (Methyltransferase OS=Vitis vinifera OX=29760 GN=VIT_18s0001g05800 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.49e-07
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 30  HCGESQYYQPIEDC-NRTKSSRWVLVEERTR-PSRAKINKSELEVYD 74
           H GES YY+P+E C   T+SSRW+ ++ RT  PSRAK+N SEL++YD
Sbjct: 451 HDGESPYYRPLEACIGGTQSSRWIPIKARTTWPSRAKLNSSELQIYD 497

[Close]
BLAST of Csor.00g137350 vs. ExPASy TrEMBL
Match: A0A438FZS6 (Methyltransferase OS=Vitis vinifera OX=29760 GN=QUA2_1 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.49e-07
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 30  HCGESQYYQPIEDC-NRTKSSRWVLVEERTR-PSRAKINKSELEVYD 74
           H GES YY+P+E C   T+SSRW+ ++ RT  PSRAK+N SEL++YD
Sbjct: 451 HDGESPYYRPLEACIGGTQSSRWIPIKARTTWPSRAKLNSSELQIYD 497

The following BLAST results are available for this feature:
BLAST of Csor.00g137350 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g137350 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6585297.11.50e-60100.00putative pectin methyltransferase QUA2, partial [Cucurbita argyrosperma subsp. s... [more]
XP_022132200.16.35e-1068.09probable pectin methyltransferase QUA2 [Momordica charantia][more]
XP_022997075.16.81e-0860.42probable pectin methyltransferase QUA2 [Cucurbita maxima][more]
KAG7029633.19.04e-0861.70putative pectin methyltransferase QUA2 [Cucurbita argyrosperma subsp. argyrosper... [more]
KAG6598691.19.31e-0861.70putative pectin methyltransferase QUA2, partial [Cucurbita argyrosperma subsp. s... [more]
BLAST of Csor.00g137350 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BRS53.07e-1068.09Methyltransferase OS=Momordica charantia OX=3673 GN=LOC111005117 PE=3 SV=1[more]
A0A6J1K8J63.30e-0860.42Methyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111492106 PE=3 SV=1[more]
A0A6J1HDD04.51e-0861.70Methyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111462579 PE=3 SV=1[more]
E0CRL65.49e-0757.45Methyltransferase OS=Vitis vinifera OX=29760 GN=VIT_18s0001g05800 PE=3 SV=1[more]
A0A438FZS65.49e-0757.45Methyltransferase OS=Vitis vinifera OX=29760 GN=QUA2_1 PE=3 SV=1[more]
BLAST of Csor.00g137350 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g137350.m01Csor.00g137350.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032259 methylation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0008168 methyltransferase activity