Csor.00g136560 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g136560
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	60S ribosomal protein L17
Location	Csor_Chr12: 294537 .. 296072 (-)
RNA-Seq Expression	Csor.00g136560
Synteny	Csor.00g136560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGTCTTTTATCCTCTTGTTTTATTCTTCATAACAATGTCATGTGAGGTTTATGTGTACGATAATCTTGAATTCCTCTTTATGTTCATTGTTGCAGGTTAAGTACTCGAGGGAACCCGACAATCCCACCAAATGTATGTTTCTTGTGGATTTCGATCGATTTCTGTTTGAAGCTCTGCATTTCTTTTGTCTATCTTCTATCGGCTTGAATTTTATGGCTTCGTTGAGATTTTTGCCTTGAACTGACACTTCGTTCTTTCTCTTTTCAGCCTGCAAAGCCAGAGGTTCGGACCTCAGAGTCCACTTTAAGGTAGGTTTAATTCCTCACCATTTCGAGCTTTGATATTTTCTTAGTTTCCATGAACTGTTTTCTACTTCTTTCCGATGTACAAAATATTTGATTCAGGGCCATATTTCCTTTCCGGTGCAAGTAATGGATTGGATAAGTGATAATATATGTGAGCTTTCGCCTTTTCCAGACCTGAAAAGACGTGCTGAATCCTTATGTTTTTTGCCACTCGCATTAACCCGACATCGTCTAGCTTTCCATGATTACTTCTGTGTAACCTGATGATAAAAGCAGGGCTTCTGTTGCCTTCTATGAACAGGGCTCTCGTAAACTTCAGGGAAATTATATGCATTGTTATTGGGTGAACCTCTGTAACCCATAGTGTCTGAAGGTTCAGTAAATGATGCGACATATTTTAGCTTGTAGCTTGACTTGCATATTTCAGTGCATCATGTTGATCAAACTAACGACATTAACATGTTAATCTTTATATTGTAGAACACAAGGGAAACTGCCCATGCCATCAGGAAGTTGCCGCTGGTCAAGGCCAAGAGTTACCTAGAGGATGTACTTGCCCACAAGCAGGCCATTCCTTTTCGTCGCTTCTGTGGTGGTGTTGGACGAACTGCCCAGGCAAAGAACAGGCATTCCAATGGCCAAGGGCGCTGGCCTGTCAAATCTGCCAAGTTTATTCTAGATTTGCTTGTGAATGCCGAGAGTAACGCTGAAGTATGTAATAATTCCTGTTTAGTTTCACTCTAAACTGTTGCTCATAAGTTCAGTTTTTTCACTGTTGCTTATAAGTATTATGTTCTTTCAGGTTAAGGGTCTGGATGTTGATTTGCTCCACGTATCTCACATCCAAGTAAACCAAGCTCAGAAGCAAAGGCGTCGAACCTACCGCGCTCATGGAAGAATCAACCGTATGTTCTGAATACAGTTTACTTATTTTTTCTCTGGATGTCTGCTTAATAAACATCCTGCCTGACATTTCCTTTCCCTTTGTTTTCCTTTTGATTGGCAGCATACATGTCTTCTCCTTGCCATATTGAGTTGATTTTGTCTGAGAAAGAAGAGCCTGTTAAGAAGGAGGTAACCAATTAGATTGCCTAATTTACATTTGTGCTGTGAAGGATATAGATAGATTGCTTTCTTATTGTTCATGATTCTACAGCCTGAGACTCAGCTGGCTACAGGCAAATCGAAGAAAGGTCGAGCGATCCGAAGCGGTGCTTCTTCTTGA

mRNA sequence

ATGGTTAAGTACTCGAGGGAACCCGACAATCCCACCAAATCCTGCAAAGCCAGAGGTTCGGACCTCAGAGTCCACTTTAAGAACACAAGGGAAACTGCCCATGCCATCAGGAAGTTGCCGCTGGTCAAGGCCAAGAGTTACCTAGAGGATGTACTTGCCCACAAGCAGGCCATTCCTTTTCGTCGCTTCTGTGGTGGTGTTGGACGAACTGCCCAGGCAAAGAACAGGCATTCCAATGGCCAAGGGCGCTGGCCTGTCAAATCTGCCAAGTTTATTCTAGATTTGCTTGTGAATGCCGAGAGTAACGCTGAAGTTAAGGGTCTGGATGTTGATTTGCTCCACGTATCTCACATCCAAGTAAACCAAGCTCAGAAGCAAAGGCGTCGAACCTACCGCGCTCATGGAAGAATCAACCCATACATGTCTTCTCCTTGCCATATTGAGTTGATTTTGTCTGAGAAAGAAGAGCCTGTTAAGAAGGAGCCTGAGACTCAGCTGGCTACAGGCAAATCGAAGAAAGGTCGAGCGATCCGAAGCGGTGCTTCTTCTTGA

Coding sequence (CDS)

ATGGTTAAGTACTCGAGGGAACCCGACAATCCCACCAAATCCTGCAAAGCCAGAGGTTCGGACCTCAGAGTCCACTTTAAGAACACAAGGGAAACTGCCCATGCCATCAGGAAGTTGCCGCTGGTCAAGGCCAAGAGTTACCTAGAGGATGTACTTGCCCACAAGCAGGCCATTCCTTTTCGTCGCTTCTGTGGTGGTGTTGGACGAACTGCCCAGGCAAAGAACAGGCATTCCAATGGCCAAGGGCGCTGGCCTGTCAAATCTGCCAAGTTTATTCTAGATTTGCTTGTGAATGCCGAGAGTAACGCTGAAGTTAAGGGTCTGGATGTTGATTTGCTCCACGTATCTCACATCCAAGTAAACCAAGCTCAGAAGCAAAGGCGTCGAACCTACCGCGCTCATGGAAGAATCAACCCATACATGTCTTCTCCTTGCCATATTGAGTTGATTTTGTCTGAGAAAGAAGAGCCTGTTAAGAAGGAGCCTGAGACTCAGCTGGCTACAGGCAAATCGAAGAAAGGTCGAGCGATCCGAAGCGGTGCTTCTTCTTGA

Protein sequence

MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSGASS

Homology

[Close]

BLAST of Csor.00g136560 vs. ExPASy Swiss-Prot
Match: P51413 (60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2)

HSP 1 Score: 312.0 bits (798), Expect = 4.5e-84
Identity = 156/176 (88.64%), Postives = 163/176 (92.61%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL+KAK YLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLL NAESNAEVKGLDVD L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRA 177
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  KSKK  A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]

BLAST of Csor.00g136560 vs. ExPASy Swiss-Prot
Match: Q93VI3 (60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 2.9e-83
Identity = 155/174 (89.08%), Postives = 162/174 (93.10%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARG+DLRVHFKNTRETAHAIRKLPL KAK YLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLL NAESNAEVKGLDVD L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKG 175
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  KSKKG
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]

BLAST of Csor.00g136560 vs. ExPASy Swiss-Prot
Match: O48557 (60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 4.3e-79
Identity = 146/170 (85.88%), Postives = 156/170 (91.76%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYS+EP NPTKS KA G DLRVHFKNTRETA A+RKLPL KAK YLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RR+CGGVGRTAQAK+RHSNGQGRWPVKSA+FILDLL NAESNA+VKGLDVD L+VSHIQV
Sbjct: 61  RRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK 171
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE +  +A  K
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADNIVAARK 170

[Close]

BLAST of Csor.00g136560 vs. ExPASy Swiss-Prot
Match: P35266 (60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.6e-76
Identity = 140/167 (83.83%), Postives = 150/167 (89.82%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYS +P NPTKS KA G DLRVHFKNTRETA A+RK+PL KAK YLEDVLAHKQAIPF
Sbjct: 1   MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RR+C GVGRTAQ KNR  NGQGRWP KSAKF+LDLL NAESNAEVKGLDVD L++SHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA 168
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE E+ +A
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEAESHIA 167

[Close]

BLAST of Csor.00g136560 vs. ExPASy Swiss-Prot
Match: P35267 (60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.7e-75
Identity = 139/171 (81.29%), Postives = 152/171 (88.89%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYSR+P NPTKS KA G DLRVHFKNTRETA A+R++PL KAK YLEDVLAHKQAIPF
Sbjct: 1   MVKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RR+C GVGRTAQ KNR  NGQGRWP KSA+F+LDLL NAESNAEVKGLDVD L++SHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKS 172
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE +  +A  K+
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPRKA 171

[Close]

BLAST of Csor.00g136560 vs. NCBI nr
Match: KAG6585218.1 (60S ribosomal protein L17-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 365 bits (936), Expect = 3.77e-127
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180

Query: 181 ASS 183
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Csor.00g136560 vs. NCBI nr
Match: XP_022951813.1 (60S ribosomal protein L17-2-like [Cucurbita moschata] >XP_023002842.1 60S ribosomal protein L17-2-like [Cucurbita maxima] >KAG7020137.1 60S ribosomal protein L17-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 363 bits (931), Expect = 2.18e-126
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAK YLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180

Query: 181 ASS 183
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Csor.00g136560 vs. NCBI nr
Match: XP_023545223.1 (60S ribosomal protein L17-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 357 bits (915), Expect = 6.01e-124
Identity = 178/183 (97.27%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAK YLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLL NAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK KKG+AIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 183
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Csor.00g136560 vs. NCBI nr
Match: XP_038885177.1 (60S ribosomal protein L17-2-like [Benincasa hispida])

HSP 1 Score: 355 bits (912), Expect = 1.72e-123
Identity = 178/183 (97.27%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPL KAK YLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLL NAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK KKG+AIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 183
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Csor.00g136560 vs. NCBI nr
Match: XP_004144196.1 (60S ribosomal protein L17-2 [Cucumis sativus] >XP_022132326.1 60S ribosomal protein L17-2-like [Momordica charantia] >XP_022962539.1 60S ribosomal protein L17-2-like [Cucurbita moschata] >KAG6598615.1 60S ribosomal protein L17-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 355 bits (911), Expect = 2.45e-123
Identity = 177/183 (96.72%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPL KAK YLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLL NAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK KKG+AIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 183
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Csor.00g136560 vs. ExPASy TrEMBL
Match: A0A6J1KKP7 (60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111496586 PE=3 SV=1)

HSP 1 Score: 363 bits (931), Expect = 1.06e-126
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAK YLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180

Query: 181 ASS 183
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Csor.00g136560 vs. ExPASy TrEMBL
Match: A0A6J1GIS5 (60S ribosomal protein L17-2-like OS=Cucurbita moschata OX=3662 GN=LOC111454545 PE=3 SV=1)

HSP 1 Score: 363 bits (931), Expect = 1.06e-126
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAK YLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180

Query: 181 ASS 183
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Csor.00g136560 vs. ExPASy TrEMBL
Match: A0A6J1BRY8 (60S ribosomal protein L17-2-like OS=Momordica charantia OX=3673 GN=LOC111005205 PE=3 SV=1)

HSP 1 Score: 355 bits (911), Expect = 1.19e-123
Identity = 177/183 (96.72%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPL KAK YLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLL NAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK KKG+AIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 183
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Csor.00g136560 vs. ExPASy TrEMBL
Match: A0A6J1HHD8 (60S ribosomal protein L17-2-like OS=Cucurbita moschata OX=3662 GN=LOC111462939 PE=3 SV=1)

HSP 1 Score: 355 bits (911), Expect = 1.19e-123
Identity = 177/183 (96.72%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPL KAK YLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLL NAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK KKG+AIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 183
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Csor.00g136560 vs. ExPASy TrEMBL
Match: A0A1S3BCV8 (60S ribosomal protein L17-2-like OS=Cucumis melo OX=3656 GN=LOC103488496 PE=3 SV=1)

HSP 1 Score: 352 bits (903), Expect = 1.97e-122
Identity = 177/183 (96.72%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETA AIRKLPL KAK YLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLL NAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK KKG+AIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 183
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Csor.00g136560 vs. TAIR 10
Match: AT1G67430.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 312.0 bits (798), Expect = 3.2e-85
Identity = 156/176 (88.64%), Postives = 163/176 (92.61%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL+KAK YLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLL NAESNAEVKGLDVD L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRA 177
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  KSKK  A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]

BLAST of Csor.00g136560 vs. TAIR 10
Match: AT1G27400.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 309.3 bits (791), Expect = 2.1e-84
Identity = 155/174 (89.08%), Postives = 162/174 (93.10%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARG+DLRVHFKNTRETAHAIRKLPL KAK YLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLL NAESNAEVKGLDVD L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKG 175
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  KSKKG
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]

BLAST of Csor.00g136560 vs. TAIR 10
Match: AT1G67430.2 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 210.7 bits (535), Expect = 1.0e-54
Identity = 117/176 (66.48%), Postives = 122/176 (69.32%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL+KAK YLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLL NAESNA                 
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNA----------------- 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRA 177
                                      ELILSEKEEPVKKEPETQLA  KSKK  A
Sbjct: 121 ---------------------------ELILSEKEEPVKKEPETQLA-AKSKKSAA 131

The following BLAST results are available for this feature:

BLAST of Csor.00g136560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51413	4.5e-84	88.64	60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2	[more]
Q93VI3	2.9e-83	89.08	60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1	[more]
O48557	4.3e-79	85.88	60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1	[more]
P35266	2.6e-76	83.83	60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1	[more]
P35267	1.7e-75	81.29	60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1	[more]

BLAST of Csor.00g136560 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6585218.1	3.77e-127	100.00	60S ribosomal protein L17-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022951813.1	2.18e-126	99.45	60S ribosomal protein L17-2-like [Cucurbita moschata] >XP_023002842.1 60S riboso...	[more]
XP_023545223.1	6.01e-124	97.27	60S ribosomal protein L17-2-like [Cucurbita pepo subsp. pepo]	[more]
XP_038885177.1	1.72e-123	97.27	60S ribosomal protein L17-2-like [Benincasa hispida]	[more]
XP_004144196.1	2.45e-123	96.72	60S ribosomal protein L17-2 [Cucumis sativus] >XP_022132326.1 60S ribosomal prot...	[more]

BLAST of Csor.00g136560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KKP7	1.06e-126	99.45	60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111496586 PE=...	[more]
A0A6J1GIS5	1.06e-126	99.45	60S ribosomal protein L17-2-like OS=Cucurbita moschata OX=3662 GN=LOC111454545 P...	[more]
A0A6J1BRY8	1.19e-123	96.72	60S ribosomal protein L17-2-like OS=Momordica charantia OX=3673 GN=LOC111005205 ...	[more]
A0A6J1HHD8	1.19e-123	96.72	60S ribosomal protein L17-2-like OS=Cucurbita moschata OX=3662 GN=LOC111462939 P...	[more]
A0A1S3BCV8	1.97e-122	96.72	60S ribosomal protein L17-2-like OS=Cucumis melo OX=3656 GN=LOC103488496 PE=3 SV...	[more]

BLAST of Csor.00g136560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67430.1	3.2e-85	88.64	Ribosomal protein L22p/L17e family protein	[more]
AT1G27400.1	2.1e-84	89.08	Ribosomal protein L22p/L17e family protein	[more]
AT1G67430.2	1.0e-54	66.48	Ribosomal protein L22p/L17e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036394	Ribosomal protein L22/L17 superfamily	GENE3D	3.90.470.10	Ribosomal protein L22/L17	coord: 1..181 e-value: 3.7E-75 score: 253.7
IPR036394	Ribosomal protein L22/L17 superfamily	SUPERFAMILY	54843	Ribosomal protein L22	coord: 1..154
IPR001063	Ribosomal protein L22/L17	PFAM	PF00237	Ribosomal_L22	coord: 17..152 e-value: 1.2E-37 score: 128.2
IPR001063	Ribosomal protein L22/L17	CDD	cd00336	Ribosomal_L22	coord: 15..151 e-value: 4.24454E-35 score: 117.207
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	TIGRFAM	TIGR01038	TIGR01038	coord: 4..154 e-value: 2.6E-59 score: 197.4
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	PANTHER	PTHR11593	60S RIBOSOMAL PROTEIN L17	coord: 1..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..183
None	No IPR available	PANTHER	PTHR11593:SF35	60S RIBOSOMAL PROTEIN L17-2-LIKE	coord: 1..183
IPR018260	Ribosomal protein L22/L17, conserved site	PROSITE	PS00464	RIBOSOMAL_L22	coord: 127..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g136560.m01	Csor.00g136560.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome