Csor.00g136220 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTCTTGCAACAGCAGCACGTAAGATGGGTCTCATGAAACCAGACCGTCAGCTCTTCGCAGTTGCTGATGACACTGCCCTGACGAAGCAAGTTTTGGCCACTCATTCCGACGAAACTCTCGAGTTTCTCGTCACTCCTTTGCTCGGTCTCATTGAACAAATTTTCCTTCGAGCTAAGCTCAATGATAAGCAGGCATGTGATACATGTGTTTTAACAATTTGTTTTCGCATATTCAACCTTTTCATGTAAGCTTTGCTCATTCATTGATTTTGTCTCCACCAGGGAACAACAGGAGCTGAACTGGAGGCAATCGAAGACAACTCTCCAAGCCCAACGGACTTGCTGGACTTGCTGGACTTTGTATCATTCACCATCCATAGAGTTTCCAATGAGGTGAGCCGTCTAGAGTTTTTTTTTCCTTCTTTGGGTATAGAAAAGTCCATTCCTTTTCAGAACTCGTTTTCTTTGCTTGTTTTTAATGATCACAGATACAGTACAAGTGTTCAAGAGCAGGGGAGCCCCATACAGTGACAATGGAAGTGTTGAATTTGTTAACAAACTGGCCATGGGATGCTAAGGCAGTGCTGGCGTTGGCTGCATTTTCCATCAACTATGGAGAGTTTTGGCTATTGGTTCACCAATCCTCATCTGACTTACTCGCCAAAGACATTCACTCCTCAAAAAACTCCCAGAAATATTCGAGAGAATCGACATTGTGA ATGGCTCTTGCAACAGCAGCACGTAAGATGGGTCTCATGAAACCAGACCGTCAGCTCTTCGCAGTTGCTGATGACACTGCCCTGACGAAGCAAGTTTTGGCCACTCATTCCGACGAAACTCTCGAGTTTCTCGTCACTCCTTTGCTCGGTCTCATTGAACAAATTTTCCTTCGAGCTAAGCTCAATGATAAGCAGGGAACAACAGGAGCTGAACTGGAGGCAATCGAAGACAACTCTCCAAGCCCAACGGACTTGCTGGACTTGCTGGACTTTGTATCATTCACCATCCATAGAGTTTCCAATGAGATACAGTACAAGTGTTCAAGAGCAGGGGAGCCCCATACAGTGACAATGGAAGTGTTGAATTTGTTAACAAACTGGCCATGGGATGCTAAGGCAGTGCTGGCGTTGGCTGCATTTTCCATCAACTATGGAGAGTTTTGGCTATTGGTTCACCAATCCTCATCTGACTTACTCGCCAAAGACATTCACTCCTCAAAAAACTCCCAGAAATATTCGAGAGAATCGACATTGTGA ATGGCTCTTGCAACAGCAGCACGTAAGATGGGTCTCATGAAACCAGACCGTCAGCTCTTCGCAGTTGCTGATGACACTGCCCTGACGAAGCAAGTTTTGGCCACTCATTCCGACGAAACTCTCGAGTTTCTCGTCACTCCTTTGCTCGGTCTCATTGAACAAATTTTCCTTCGAGCTAAGCTCAATGATAAGCAGGGAACAACAGGAGCTGAACTGGAGGCAATCGAAGACAACTCTCCAAGCCCAACGGACTTGCTGGACTTGCTGGACTTTGTATCATTCACCATCCATAGAGTTTCCAATGAGATACAGTACAAGTGTTCAAGAGCAGGGGAGCCCCATACAGTGACAATGGAAGTGTTGAATTTGTTAACAAACTGGCCATGGGATGCTAAGGCAGTGCTGGCGTTGGCTGCATTTTCCATCAACTATGGAGAGTTTTGGCTATTGGTTCACCAATCCTCATCTGACTTACTCGCCAAAGACATTCACTCCTCAAAAAACTCCCAGAAATATTCGAGAGAATCGACATTGTGA MALATAARKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAKLNDKQGTTGAELEAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEVLNLLTNWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDIHSSKNSQKYSRESTL Homology
BLAST of Csor.00g136220 vs. ExPASy Swiss-Prot
Match: Q9SS87 (Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana OX=3702 GN=SEOB PE=1 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 1.4e-21 Identity = 59/151 (39.07%), Postives = 85/151 (56.29%), Query Frame = 0
BLAST of Csor.00g136220 vs. ExPASy Swiss-Prot
Match: Q93XX2 (Protein SIEVE ELEMENT OCCLUSION A OS=Arabidopsis thaliana OX=3702 GN=SEOA PE=1 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 7.3e-15 Identity = 57/191 (29.84%), Postives = 93/191 (48.69%), Query Frame = 0
BLAST of Csor.00g136220 vs. ExPASy Swiss-Prot
Match: Q9FXE2 (Protein SIEVE ELEMENT OCCLUSION C OS=Arabidopsis thaliana OX=3702 GN=SEOC PE=4 SV=2) HSP 1 Score: 51.2 bits (121), Expect = 1.4e-05 Identity = 37/147 (25.17%), Postives = 65/147 (44.22%), Query Frame = 0
BLAST of Csor.00g136220 vs. NCBI nr
Match: KAG6585184.1 (Protein SIEVE ELEMENT OCCLUSION B, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 349 bits (895), Expect = 4.61e-121 Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
BLAST of Csor.00g136220 vs. NCBI nr
Match: XP_023537424.1 (protein SIEVE ELEMENT OCCLUSION B-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 322 bits (825), Expect = 1.91e-103 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
BLAST of Csor.00g136220 vs. NCBI nr
Match: XP_023002121.1 (protein SIEVE ELEMENT OCCLUSION B-like [Cucurbita maxima]) HSP 1 Score: 322 bits (825), Expect = 1.91e-103 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
BLAST of Csor.00g136220 vs. NCBI nr
Match: XP_022951465.1 (protein SIEVE ELEMENT OCCLUSION B-like [Cucurbita moschata] >KAG7020104.1 Protein SIEVE ELEMENT OCCLUSION B [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 322 bits (825), Expect = 1.91e-103 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
BLAST of Csor.00g136220 vs. NCBI nr
Match: XP_004143056.1 (protein SIEVE ELEMENT OCCLUSION B [Cucumis sativus] >KGN62332.1 hypothetical protein Csa_018749 [Cucumis sativus]) HSP 1 Score: 260 bits (664), Expect = 1.47e-79 Identity = 130/158 (82.28%), Postives = 142/158 (89.87%), Query Frame = 0
BLAST of Csor.00g136220 vs. ExPASy TrEMBL
Match: A0A6J1KKF1 (protein SIEVE ELEMENT OCCLUSION B-like OS=Cucurbita maxima OX=3661 GN=LOC111496078 PE=4 SV=1) HSP 1 Score: 322 bits (825), Expect = 9.25e-104 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
BLAST of Csor.00g136220 vs. ExPASy TrEMBL
Match: A0A6J1GIV3 (protein SIEVE ELEMENT OCCLUSION B-like OS=Cucurbita moschata OX=3662 GN=LOC111454275 PE=4 SV=1) HSP 1 Score: 322 bits (825), Expect = 9.25e-104 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
BLAST of Csor.00g136220 vs. ExPASy TrEMBL
Match: A0A0A0LNE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G349660 PE=4 SV=1) HSP 1 Score: 260 bits (664), Expect = 7.13e-80 Identity = 130/158 (82.28%), Postives = 142/158 (89.87%), Query Frame = 0
BLAST of Csor.00g136220 vs. ExPASy TrEMBL
Match: A0A1S3B9Q6 (protein SIEVE ELEMENT OCCLUSION B OS=Cucumis melo OX=3656 GN=LOC103487729 PE=4 SV=1) HSP 1 Score: 259 bits (661), Expect = 1.97e-79 Identity = 129/159 (81.13%), Postives = 142/159 (89.31%), Query Frame = 0
BLAST of Csor.00g136220 vs. ExPASy TrEMBL
Match: A0A5A7V141 (Protein SIEVE ELEMENT OCCLUSION B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001880 PE=4 SV=1) HSP 1 Score: 253 bits (646), Expect = 3.44e-77 Identity = 129/163 (79.14%), Postives = 142/163 (87.12%), Query Frame = 0
BLAST of Csor.00g136220 vs. TAIR 10
Match: AT3G01680.1 (CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 104.4 bits (259), Expect = 9.8e-23 Identity = 59/151 (39.07%), Postives = 85/151 (56.29%), Query Frame = 0
BLAST of Csor.00g136220 vs. TAIR 10
Match: AT3G01670.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01680.1); Has 121 Blast hits to 111 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 82.0 bits (201), Expect = 5.2e-16 Identity = 57/191 (29.84%), Postives = 93/191 (48.69%), Query Frame = 0
BLAST of Csor.00g136220 vs. TAIR 10
Match: AT1G67790.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01680.1); Has 208 Blast hits to 125 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 208; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 51.2 bits (121), Expect = 9.8e-07 Identity = 37/147 (25.17%), Postives = 65/147 (44.22%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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