Csor.00g136220 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g136220
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein SIEVE ELEMENT OCCLUSION B-like
Location	Csor_Chr12: 175458 .. 176179 (+)
RNA-Seq Expression	Csor.00g136220
Synteny	Csor.00g136220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTTGCAACAGCAGCACGTAAGATGGGTCTCATGAAACCAGACCGTCAGCTCTTCGCAGTTGCTGATGACACTGCCCTGACGAAGCAAGTTTTGGCCACTCATTCCGACGAAACTCTCGAGTTTCTCGTCACTCCTTTGCTCGGTCTCATTGAACAAATTTTCCTTCGAGCTAAGCTCAATGATAAGCAGGCATGTGATACATGTGTTTTAACAATTTGTTTTCGCATATTCAACCTTTTCATGTAAGCTTTGCTCATTCATTGATTTTGTCTCCACCAGGGAACAACAGGAGCTGAACTGGAGGCAATCGAAGACAACTCTCCAAGCCCAACGGACTTGCTGGACTTGCTGGACTTTGTATCATTCACCATCCATAGAGTTTCCAATGAGGTGAGCCGTCTAGAGTTTTTTTTTCCTTCTTTGGGTATAGAAAAGTCCATTCCTTTTCAGAACTCGTTTTCTTTGCTTGTTTTTAATGATCACAGATACAGTACAAGTGTTCAAGAGCAGGGGAGCCCCATACAGTGACAATGGAAGTGTTGAATTTGTTAACAAACTGGCCATGGGATGCTAAGGCAGTGCTGGCGTTGGCTGCATTTTCCATCAACTATGGAGAGTTTTGGCTATTGGTTCACCAATCCTCATCTGACTTACTCGCCAAAGACATTCACTCCTCAAAAAACTCCCAGAAATATTCGAGAGAATCGACATTGTGA

mRNA sequence

ATGGCTCTTGCAACAGCAGCACGTAAGATGGGTCTCATGAAACCAGACCGTCAGCTCTTCGCAGTTGCTGATGACACTGCCCTGACGAAGCAAGTTTTGGCCACTCATTCCGACGAAACTCTCGAGTTTCTCGTCACTCCTTTGCTCGGTCTCATTGAACAAATTTTCCTTCGAGCTAAGCTCAATGATAAGCAGGGAACAACAGGAGCTGAACTGGAGGCAATCGAAGACAACTCTCCAAGCCCAACGGACTTGCTGGACTTGCTGGACTTTGTATCATTCACCATCCATAGAGTTTCCAATGAGATACAGTACAAGTGTTCAAGAGCAGGGGAGCCCCATACAGTGACAATGGAAGTGTTGAATTTGTTAACAAACTGGCCATGGGATGCTAAGGCAGTGCTGGCGTTGGCTGCATTTTCCATCAACTATGGAGAGTTTTGGCTATTGGTTCACCAATCCTCATCTGACTTACTCGCCAAAGACATTCACTCCTCAAAAAACTCCCAGAAATATTCGAGAGAATCGACATTGTGA

Coding sequence (CDS)

ATGGCTCTTGCAACAGCAGCACGTAAGATGGGTCTCATGAAACCAGACCGTCAGCTCTTCGCAGTTGCTGATGACACTGCCCTGACGAAGCAAGTTTTGGCCACTCATTCCGACGAAACTCTCGAGTTTCTCGTCACTCCTTTGCTCGGTCTCATTGAACAAATTTTCCTTCGAGCTAAGCTCAATGATAAGCAGGGAACAACAGGAGCTGAACTGGAGGCAATCGAAGACAACTCTCCAAGCCCAACGGACTTGCTGGACTTGCTGGACTTTGTATCATTCACCATCCATAGAGTTTCCAATGAGATACAGTACAAGTGTTCAAGAGCAGGGGAGCCCCATACAGTGACAATGGAAGTGTTGAATTTGTTAACAAACTGGCCATGGGATGCTAAGGCAGTGCTGGCGTTGGCTGCATTTTCCATCAACTATGGAGAGTTTTGGCTATTGGTTCACCAATCCTCATCTGACTTACTCGCCAAAGACATTCACTCCTCAAAAAACTCCCAGAAATATTCGAGAGAATCGACATTGTGA

Protein sequence

MALATAARKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAKLNDKQGTTGAELEAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEVLNLLTNWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDIHSSKNSQKYSRESTL

Homology

[Close]

BLAST of Csor.00g136220 vs. ExPASy Swiss-Prot
Match: Q9SS87 (Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana OX=3702 GN=SEOB PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-21
Identity = 59/151 (39.07%), Postives = 85/151 (56.29%), Query Frame = 0


Query: 13  MKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAKLNDKQGTTGAEL 72
           M P   L   +D++ + K +  THS +  E  V  LL L+E I  RA L D + T  + L
Sbjct: 28  MIPATGLAMSSDESMMLKLIQQTHSPDAREVQVRGLLSLVEDILDRATL-DSEDTNASML 87

Query: 73  EAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEVLNLLTNWPWDAK 132
               ++    + ++ +LD VS+ I RV+ EI YK     + H +TM V   L+++ WD K
Sbjct: 88  PLPTEDKLMQSSMMSVLDSVSYAIDRVACEIAYKSLTGSDSHEITMSVFEHLSSFQWDGK 147

Query: 133 AVLALAAFSINYGEFWLLVHQSSSDLLAKDI 164
            VL LAAF++NYGEFWLLV   S + LAK +
Sbjct: 148 LVLTLAAFALNYGEFWLLVQFYSKNQLAKSL 177

[Close]

BLAST of Csor.00g136220 vs. ExPASy Swiss-Prot
Match: Q93XX2 (Protein SIEVE ELEMENT OCCLUSION A OS=Arabidopsis thaliana OX=3702 GN=SEOA PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.3e-15
Identity = 57/191 (29.84%), Postives = 93/191 (48.69%), Query Frame = 0


Query: 8   RKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAKLNDKQGT 67
           +K    +  R +F+++DD  +  +VL THS + + F VT LL ++  IF           
Sbjct: 122 KKQAFHRNGRPMFSLSDDRVMADRVLKTHSPDMIFFDVTSLLSVVNDIF----------- 181

Query: 68  TGAELEAIEDNSPSPT----DLLDLLDFVSFT--IHRVSNEIQYKCSRAGEPH------- 127
             + + +I+ ++P P+    D  D   F +F   I ++S EI  KC   GE H       
Sbjct: 182 -KSHVPSIDSSAPKPSLVFKDYADHTSFETFADLIDQISCEIDCKCLHGGESHGMMTSGL 241

Query: 128 ------TVTMEVLNLLTNWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDIHSSKN 179
                 T T  VL+L++ + WDAK VL L+A ++ YG F LL    +++ L K +   K 
Sbjct: 242 HLDSRNTTTFSVLSLVSKYRWDAKLVLVLSALAVKYGVFLLLAETHATNQLTKSLALIKQ 300

[Close]

BLAST of Csor.00g136220 vs. ExPASy Swiss-Prot
Match: Q9FXE2 (Protein SIEVE ELEMENT OCCLUSION C OS=Arabidopsis thaliana OX=3702 GN=SEOC PE=4 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 1.4e-05
Identity = 37/147 (25.17%), Postives = 65/147 (44.22%), Query Frame = 0


Query: 17  RQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAKLNDKQGTTGAELEAIE 76
           R+  +  ++  + +Q+L +H  +        LL  +E I      ND           + 
Sbjct: 4   RRDISALNEDIIVEQLLRSHDPDGRWLDSEMLLQEVETILSFVLQND------VSRPLLT 63

Query: 77  DNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEVLNLLTNWPWDAKAVLA 136
           +N  +  ++ D  + + + I R+S ++   C+   E    TM + +LL  + WDAKAVL 
Sbjct: 64  ENCITTIEVFDSKETLPYAIFRISVQMLCPCTGENEIRKRTMVLFDLLKEYRWDAKAVLV 123

Query: 137 LAAFSINYGEFWLLVHQSSSDLLAKDI 164
           L   +  YG   L VH +  D +A  I
Sbjct: 124 LGVLAATYGGLLLPVHLAICDPVAASI 144

[Close]

BLAST of Csor.00g136220 vs. NCBI nr
Match: KAG6585184.1 (Protein SIEVE ELEMENT OCCLUSION B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 349 bits (895), Expect = 4.61e-121
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MALATAARKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAK 60
           MALATAARKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAK
Sbjct: 1   MALATAARKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAK 60

Query: 61  LNDKQGTTGAELEAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEV 120
           LNDKQGTTGAELEAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEV
Sbjct: 61  LNDKQGTTGAELEAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEV 120

Query: 121 LNLLTNWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDIHSSKNSQKYSRESTL 178
           LNLLTNWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDIHSSKNSQKYSRESTL
Sbjct: 121 LNLLTNWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDIHSSKNSQKYSRESTL 178

[Close]

BLAST of Csor.00g136220 vs. NCBI nr
Match: XP_023537424.1 (protein SIEVE ELEMENT OCCLUSION B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 322 bits (825), Expect = 1.91e-103
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MALATAARKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAK 60
           MALATAARKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAK
Sbjct: 1   MALATAARKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAK 60

Query: 61  LNDKQGTTGAELEAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEV 120
           LNDKQGTTGAELEAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEV
Sbjct: 61  LNDKQGTTGAELEAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEV 120

Query: 121 LNLLTNWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDI 163
           LNLLTNWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDI
Sbjct: 121 LNLLTNWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDI 163

[Close]

BLAST of Csor.00g136220 vs. NCBI nr
Match: XP_023002121.1 (protein SIEVE ELEMENT OCCLUSION B-like [Cucurbita maxima])

HSP 1 Score: 322 bits (825), Expect = 1.91e-103
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MALATAARKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAK 60
           MALATAARKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAK
Sbjct: 1   MALATAARKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAK 60

Query: 61  LNDKQGTTGAELEAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEV 120
           LNDKQGTTGAELEAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEV
Sbjct: 61  LNDKQGTTGAELEAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEV 120

Query: 121 LNLLTNWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDI 163
           LNLLTNWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDI
Sbjct: 121 LNLLTNWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDI 163

[Close]

BLAST of Csor.00g136220 vs. NCBI nr
Match: XP_022951465.1 (protein SIEVE ELEMENT OCCLUSION B-like [Cucurbita moschata] >KAG7020104.1 Protein SIEVE ELEMENT OCCLUSION B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 322 bits (825), Expect = 1.91e-103
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MALATAARKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAK 60
           MALATAARKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAK
Sbjct: 1   MALATAARKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAK 60

Query: 61  LNDKQGTTGAELEAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEV 120
           LNDKQGTTGAELEAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEV
Sbjct: 61  LNDKQGTTGAELEAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEV 120

Query: 121 LNLLTNWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDI 163
           LNLLTNWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDI
Sbjct: 121 LNLLTNWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDI 163

[Close]

BLAST of Csor.00g136220 vs. NCBI nr
Match: XP_004143056.1 (protein SIEVE ELEMENT OCCLUSION B [Cucumis sativus] >KGN62332.1 hypothetical protein Csa_018749 [Cucumis sativus])

HSP 1 Score: 260 bits (664), Expect = 1.47e-79
Identity = 130/158 (82.28%), Postives = 142/158 (89.87%), Query Frame = 0


Query: 6   AARKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAKLNDKQ 65
           A RK+ L+KPDRQLFA  D+ ALTKQVLATHS+E LEF VTPLL L+EQIFLRAKLN  Q
Sbjct: 5   APRKLSLIKPDRQLFAGGDENALTKQVLATHSEEPLEFPVTPLLSLVEQIFLRAKLNTLQ 64

Query: 66  GTTGAELEAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEVLNLLT 125
           GTT A+LEAIED SPSPTDLLDLLDFVSFTI+RVSNEIQYKCS AG+PHTVTMEV NLL+
Sbjct: 65  GTTRAQLEAIEDKSPSPTDLLDLLDFVSFTINRVSNEIQYKCSGAGDPHTVTMEVFNLLS 124

Query: 126 NWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDI 163
           +WPWDAK VLALAAF+INYGEFWLLV QSS+DLLAKDI
Sbjct: 125 SWPWDAKVVLALAAFAINYGEFWLLVQQSSTDLLAKDI 162

[Close]

BLAST of Csor.00g136220 vs. ExPASy TrEMBL
Match: A0A6J1KKF1 (protein SIEVE ELEMENT OCCLUSION B-like OS=Cucurbita maxima OX=3661 GN=LOC111496078 PE=4 SV=1)

HSP 1 Score: 322 bits (825), Expect = 9.25e-104
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MALATAARKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAK 60
           MALATAARKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAK
Sbjct: 1   MALATAARKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAK 60

Query: 61  LNDKQGTTGAELEAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEV 120
           LNDKQGTTGAELEAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEV
Sbjct: 61  LNDKQGTTGAELEAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEV 120

Query: 121 LNLLTNWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDI 163
           LNLLTNWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDI
Sbjct: 121 LNLLTNWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDI 163

[Close]

BLAST of Csor.00g136220 vs. ExPASy TrEMBL
Match: A0A6J1GIV3 (protein SIEVE ELEMENT OCCLUSION B-like OS=Cucurbita moschata OX=3662 GN=LOC111454275 PE=4 SV=1)

HSP 1 Score: 322 bits (825), Expect = 9.25e-104
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MALATAARKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAK 60
           MALATAARKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAK
Sbjct: 1   MALATAARKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAK 60

Query: 61  LNDKQGTTGAELEAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEV 120
           LNDKQGTTGAELEAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEV
Sbjct: 61  LNDKQGTTGAELEAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEV 120

Query: 121 LNLLTNWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDI 163
           LNLLTNWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDI
Sbjct: 121 LNLLTNWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDI 163

[Close]

BLAST of Csor.00g136220 vs. ExPASy TrEMBL
Match: A0A0A0LNE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G349660 PE=4 SV=1)

HSP 1 Score: 260 bits (664), Expect = 7.13e-80
Identity = 130/158 (82.28%), Postives = 142/158 (89.87%), Query Frame = 0


Query: 6   AARKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAKLNDKQ 65
           A RK+ L+KPDRQLFA  D+ ALTKQVLATHS+E LEF VTPLL L+EQIFLRAKLN  Q
Sbjct: 5   APRKLSLIKPDRQLFAGGDENALTKQVLATHSEEPLEFPVTPLLSLVEQIFLRAKLNTLQ 64

Query: 66  GTTGAELEAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEVLNLLT 125
           GTT A+LEAIED SPSPTDLLDLLDFVSFTI+RVSNEIQYKCS AG+PHTVTMEV NLL+
Sbjct: 65  GTTRAQLEAIEDKSPSPTDLLDLLDFVSFTINRVSNEIQYKCSGAGDPHTVTMEVFNLLS 124

Query: 126 NWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDI 163
           +WPWDAK VLALAAF+INYGEFWLLV QSS+DLLAKDI
Sbjct: 125 SWPWDAKVVLALAAFAINYGEFWLLVQQSSTDLLAKDI 162

[Close]

BLAST of Csor.00g136220 vs. ExPASy TrEMBL
Match: A0A1S3B9Q6 (protein SIEVE ELEMENT OCCLUSION B OS=Cucumis melo OX=3656 GN=LOC103487729 PE=4 SV=1)

HSP 1 Score: 259 bits (661), Expect = 1.97e-79
Identity = 129/159 (81.13%), Postives = 142/159 (89.31%), Query Frame = 0


Query: 5   TAARKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAKLNDK 64
           +A RK+ L+KPDRQLFA  D+ ALTKQVLATHS+E LEF VTPLL L+EQIFLRAKLN  
Sbjct: 4   SAPRKLSLIKPDRQLFAGGDENALTKQVLATHSEEPLEFPVTPLLSLVEQIFLRAKLNTH 63

Query: 65  QGTTGAELEAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEVLNLL 124
           QG T A+LEAIED SPSPTDLLDLLDFVSFTI+RVSNEIQYKCS AG+PHTVTMEV NLL
Sbjct: 64  QGATRAQLEAIEDKSPSPTDLLDLLDFVSFTINRVSNEIQYKCSGAGDPHTVTMEVFNLL 123

Query: 125 TNWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDI 163
           ++WPWDAK VLALAAF+INYGEFWLLV QSS+DLLAKDI
Sbjct: 124 SSWPWDAKVVLALAAFAINYGEFWLLVQQSSTDLLAKDI 162

[Close]

BLAST of Csor.00g136220 vs. ExPASy TrEMBL
Match: A0A5A7V141 (Protein SIEVE ELEMENT OCCLUSION B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001880 PE=4 SV=1)

HSP 1 Score: 253 bits (646), Expect = 3.44e-77
Identity = 129/163 (79.14%), Postives = 142/163 (87.12%), Query Frame = 0


Query: 5   TAARKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAKLNDK 64
           +A RK+ L+KPDRQLFA  D+ ALTKQVLATHS+E LEF VTPLL L+EQIFLRAKLN  
Sbjct: 4   SAPRKLSLIKPDRQLFAGGDENALTKQVLATHSEEPLEFPVTPLLSLVEQIFLRAKLNTH 63

Query: 65  Q----GTTGAELEAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEV 124
           Q    G T A+LEAIED SPSPTDLLDLLDFVSFTI+RVSNEIQYKCS AG+PHTVTMEV
Sbjct: 64  QAYTCGATRAQLEAIEDKSPSPTDLLDLLDFVSFTINRVSNEIQYKCSGAGDPHTVTMEV 123

Query: 125 LNLLTNWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDI 163
            NLL++WPWDAK VLALAAF+INYGEFWLLV QSS+DLLAKDI
Sbjct: 124 FNLLSSWPWDAKVVLALAAFAINYGEFWLLVQQSSTDLLAKDI 166

[Close]

BLAST of Csor.00g136220 vs. TAIR 10
Match: AT3G01680.1 (CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 104.4 bits (259), Expect = 9.8e-23
Identity = 59/151 (39.07%), Postives = 85/151 (56.29%), Query Frame = 0


Query: 13  MKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAKLNDKQGTTGAEL 72
           M P   L   +D++ + K +  THS +  E  V  LL L+E I  RA L D + T  + L
Sbjct: 28  MIPATGLAMSSDESMMLKLIQQTHSPDAREVQVRGLLSLVEDILDRATL-DSEDTNASML 87

Query: 73  EAIEDNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEVLNLLTNWPWDAK 132
               ++    + ++ +LD VS+ I RV+ EI YK     + H +TM V   L+++ WD K
Sbjct: 88  PLPTEDKLMQSSMMSVLDSVSYAIDRVACEIAYKSLTGSDSHEITMSVFEHLSSFQWDGK 147

Query: 133 AVLALAAFSINYGEFWLLVHQSSSDLLAKDI 164
            VL LAAF++NYGEFWLLV   S + LAK +
Sbjct: 148 LVLTLAAFALNYGEFWLLVQFYSKNQLAKSL 177

[Close]

BLAST of Csor.00g136220 vs. TAIR 10
Match: AT3G01670.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01680.1); Has 121 Blast hits to 111 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 82.0 bits (201), Expect = 5.2e-16
Identity = 57/191 (29.84%), Postives = 93/191 (48.69%), Query Frame = 0


Query: 8   RKMGLMKPDRQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAKLNDKQGT 67
           +K    +  R +F+++DD  +  +VL THS + + F VT LL ++  IF           
Sbjct: 122 KKQAFHRNGRPMFSLSDDRVMADRVLKTHSPDMIFFDVTSLLSVVNDIF----------- 181

Query: 68  TGAELEAIEDNSPSPT----DLLDLLDFVSFT--IHRVSNEIQYKCSRAGEPH------- 127
             + + +I+ ++P P+    D  D   F +F   I ++S EI  KC   GE H       
Sbjct: 182 -KSHVPSIDSSAPKPSLVFKDYADHTSFETFADLIDQISCEIDCKCLHGGESHGMMTSGL 241

Query: 128 ------TVTMEVLNLLTNWPWDAKAVLALAAFSINYGEFWLLVHQSSSDLLAKDIHSSKN 179
                 T T  VL+L++ + WDAK VL L+A ++ YG F LL    +++ L K +   K 
Sbjct: 242 HLDSRNTTTFSVLSLVSKYRWDAKLVLVLSALAVKYGVFLLLAETHATNQLTKSLALIKQ 300

[Close]

BLAST of Csor.00g136220 vs. TAIR 10
Match: AT1G67790.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01680.1); Has 208 Blast hits to 125 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 208; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 9.8e-07
Identity = 37/147 (25.17%), Postives = 65/147 (44.22%), Query Frame = 0


Query: 17  RQLFAVADDTALTKQVLATHSDETLEFLVTPLLGLIEQIFLRAKLNDKQGTTGAELEAIE 76
           R+  +  ++  + +Q+L +H  +        LL  +E I      ND           + 
Sbjct: 4   RRDISALNEDIIVEQLLRSHDPDGRWLDSEMLLQEVETILSFVLQND------VSRPLLT 63

Query: 77  DNSPSPTDLLDLLDFVSFTIHRVSNEIQYKCSRAGEPHTVTMEVLNLLTNWPWDAKAVLA 136
           +N  +  ++ D  + + + I R+S ++   C+   E    TM + +LL  + WDAKAVL 
Sbjct: 64  ENCITTIEVFDSKETLPYAIFRISVQMLCPCTGENEIRKRTMVLFDLLKEYRWDAKAVLV 123

Query: 137 LAAFSINYGEFWLLVHQSSSDLLAKDI 164
           L   +  YG   L VH +  D +A  I
Sbjct: 124 LGVLAATYGGLLLPVHLAICDPVAASI 144

The following BLAST results are available for this feature:

BLAST of Csor.00g136220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SS87	1.4e-21	39.07	Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana OX=3702 GN=SEOB PE=1 S...	[more]
Q93XX2	7.3e-15	29.84	Protein SIEVE ELEMENT OCCLUSION A OS=Arabidopsis thaliana OX=3702 GN=SEOA PE=1 S...	[more]
Q9FXE2	1.4e-05	25.17	Protein SIEVE ELEMENT OCCLUSION C OS=Arabidopsis thaliana OX=3702 GN=SEOC PE=4 S...	[more]

BLAST of Csor.00g136220 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6585184.1	4.61e-121	100.00	Protein SIEVE ELEMENT OCCLUSION B, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023537424.1	1.91e-103	100.00	protein SIEVE ELEMENT OCCLUSION B-like [Cucurbita pepo subsp. pepo]	[more]
XP_023002121.1	1.91e-103	100.00	protein SIEVE ELEMENT OCCLUSION B-like [Cucurbita maxima]	[more]
XP_022951465.1	1.91e-103	100.00	protein SIEVE ELEMENT OCCLUSION B-like [Cucurbita moschata] >KAG7020104.1 Protei...	[more]
XP_004143056.1	1.47e-79	82.28	protein SIEVE ELEMENT OCCLUSION B [Cucumis sativus] >KGN62332.1 hypothetical pro...	[more]

BLAST of Csor.00g136220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KKF1	9.25e-104	100.00	protein SIEVE ELEMENT OCCLUSION B-like OS=Cucurbita maxima OX=3661 GN=LOC1114960...	[more]
A0A6J1GIV3	9.25e-104	100.00	protein SIEVE ELEMENT OCCLUSION B-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A0A0LNE1	7.13e-80	82.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G349660 PE=4 SV=1	[more]
A0A1S3B9Q6	1.97e-79	81.13	protein SIEVE ELEMENT OCCLUSION B OS=Cucumis melo OX=3656 GN=LOC103487729 PE=4 S...	[more]
A0A5A7V141	3.44e-77	79.14	Protein SIEVE ELEMENT OCCLUSION B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Csor.00g136220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01680.1	9.8e-23	39.07	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640);...	[more]
AT3G01670.1	5.2e-16	29.84	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G67790.1	9.8e-07	25.17	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027942	Sieve element occlusion, N-terminal	PFAM	PF14576	SEO_N	coord: 24..163 e-value: 7.6E-41 score: 140.2
None	No IPR available	PANTHER	PTHR33232:SF20	PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE	coord: 5..168
IPR039299	Protein SIEVE ELEMENT OCCLUSION	PANTHER	PTHR33232	PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE	coord: 5..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g136220.m01	Csor.00g136220.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010088	phloem development