Csor.00g122440 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCTCTGCATTGCTCCCCCTCTATCCATAAGTCCTTCTTCGTCAATTCTCTTCCTCAGGTGCATAATTCCTCCCGAATCTTCTCGATTTTGGTTTCTGTTTTATGCCGATCCGTATTCTAATTAACGATCGGTAATGTTCTGTTGCTTACAGAGACTACGTGGAAGATTTGTTTGCTGCAGAGCGGGGATTTCGTTTCTTGTCCGGGCCGAGCAAGCACACGGATCTTCCGGTAATGGTCAAGCCTGCAGTTCCGAAGGTTAGTTTAGCGAATTGATATGGAAAATCGGTTGTTACTTGAATTAGAGTGTTTCTTATACCGGCATTTAACTTTTAGATGTTGACTGTGTTATGAATCAAGATGATTTGGCGGAAGCAAATAGAGTGTAGAAGGTTTGATAACTCTTAATCATCTGTTAGAAAACATGACTCACCGCCATCGCCATACTGATATATTGAAGTAATAGAAAGAAACCACATTGCAAAGTAGTAAATGAAAGGGAAATTAAAACGAAGTGAGACATGTACTAAGCAAATCTTCTTAGAGGACATAGTGTTCGTAACCGCCTAAGCCTACCGCGAGTAGATATTGTCCGCTTTGGCTCGTTAACTATTGTTAGCTTCACGATTTTAAAACTAGTAGGGAGAGGTTTTCACACCTTTATGCTGTTTCCTTTCCAACCAACGTGGGATCTCTCAATCCAATCCACCTCCTTAGAGGTCCAATGTCCTCACTAGTACACCGCTTGGTGTCTAGCTCTAATACCATTTTGTATAACAGCCCAGTTTAAAAGACATGCAATCTAAATAAATTATTCAACACATAAAAACGACCAAAAAGTTTACTCAGTTTCACTCCTGATCCCCATAACTTGTAGGTACCGTAGCATTACGATTCATGAATATTCATTTATGATTAATGGGCCATATTAATTTTGTTGCGTAAACCGAGGGGTTGAATACGAGTCTCCTCCTTTTCATGACCAGAAACTCAAGTCATGATGGGCTAGAATGGATTTTCGTTTTGCTAGCTTACCATGTGCATCTTCATTGCTTATATCACTCAAATGGTATTTTCTGGCTTGTATAGTTTTATCAGAATTCAAGCATTTTTTTACACAATTCAGGAATTTTTTATACTGCCTTTGAATCTCATCCCGTGGATGATCTCACTGCATTCTTGCTCTATTAAAGAATTTCATTGTTCAATAGTTGCTCTGTTTTTTGGCAGATAGGCTTGGGAGACGCCAGCTACTAGCTGGCAGTTCCTTTATCACTTGGATTTCTCTTGCAGACATGAATTCCATGTCATGTAAGATTCATCACTCCTATTTACTTACTGATATCTTATATTTTTCTTTCAAGAAGTTTAATTCTAAAATTAGCACCTCTAGCTTGCACTGTATTTATTTCTTTCAAATTGAAGGATGATGATATCCTAAGAGTACCCGCTTGATATTGCTCAGTTGCTGCAGAATCAAAGAAAGGGTTTCTATCAGTTACTGACAAGACAGATGGTTACTCGTTCCTTTATCCATTTGGGTGGCAGGTACTCTTTATAGTTCAGTTTTCTATGTCCTTCACTCTTGTACTTTTGCACACACAGTCCACTTTAAAGTTAACTACTCGGCAAAAGATGCACGTTTCTAAGTCCTTTTTCACTCGAGGAGTGAGCAGGAAGTAGTCATTGATGGTCAAGATAAGGTGTTCAAAGATGTAATTGAACCATTAGAAAGTGTCAGTGTCAATCTGATACCAACCAGCAAAGAAGATATTCGAGATTTTGGTCCCCCTCAACAGGTTAGCTTTAAAATGTTAGAATAATGCAATAAATTGTTGTTTAAACTGGTAGCTAACTAAAGTTAGTATCGTATGGTTCAGGTTGCAGAAACTTTGATAAAGAAGGTTCTAGCTCCTTCTAATCAAAAAACGAAGTTAATCGAAGCATCAGAGGTTTGGCTATCTATACTCATCTCAGATACTGTCATACTAGTTTCTATGAAGTGAAGTAAATAGTAGCTGTAAATGAACTTACCCCTTAAATCTGATGAACAAATATTTGTAACAGCCCTAGCCCACTCCCTAACCTACGCCCTAACCTACTGTTAGCAGATATTATCCTCTTTGGATTTTTTTTCTTTGGCTTTCCCTCAAGGTTTTGAAATGCGTCTACTAGGAAGAGGTTTCCACGCCTTTATAAGGAATGCTTCGTTCCCCTCTCCAACCAATGTGGGATCTCACAATCCACTCCTCTTGGGAGTCTAGTATCCTTGCTGGCACATCGCTCGGTGTCTGTCTTTGATACAATTTGTGACAGCCCTAGCCCACCGTTAGCAGATATTATCCTCTTTAGGCGTTCCCTCCTAGGCTTCCCCTCAAGATTTAAAAACGTGTTTGCTAGAGAGAGGTTTCCACACTCTTATAAGAAATGCTTCACCACTCAGCACTATGGTGGAAAGTTTTCTCGGAAATTTTTCCACAAATTTTTATGGCAACACTGTAAATCAATCATCTAAAATGAAAAATACATCCAAAAGTAAAACCAATTGTAATCTGTGAAGTGATAGCCTGATAGAACTACCAATAAGTACTTCTTAACTTGTTTTAACGTTTGAAAGCTAGTCCATGTGAACCCTCTTCTATATACTCATTGGTCTGTGTTGATGAATGATGCAGCATGAAGTTGATGGGAAAGCATACTACACATTTGAGTTTGTAGCTCAAGCTCCAAACTACACTCGCCATGCTCTTAGCACAATTGCTGTTTCCAATGGTATGGAACTTCATTACACTTATTTTTCCAAGTTAATCTTATTAGGCCTATCCAACAAATTATATTTGGCAGGAAAATTCTACACTTTGACGACCGGAGCAAATGAGAGGAGGTGGGAGAAAATGAAAGATAAATTGCGCACAGTTGTTGATTCCTTCACAATTTCAAACGTTTGA ATGGCTTCTCTGCATTGCTCCCCCTCTATCCATAAGTCCTTCTTCGTCAATTCTCTTCCTCAGAGACTACGTGGAAGATTTGTTTGCTGCAGAGCGGGGATTTCGTTTCTTGTCCGGGCCGAGCAAGCACACGGATCTTCCGGTAATGGTCAAGCCTGCAGTTCCGAAGATAGGCTTGGGAGACGCCAGCTACTAGCTGGCAGTTCCTTTATCACTTGGATTTCTCTTGCAGACATGAATTCCATGTCATTTGCTGCAGAATCAAAGAAAGGGTTTCTATCAGTTACTGACAAGACAGATGGTTACTCGTTCCTTTATCCATTTGGGTGGCAGGAAGTAGTCATTGATGGTCAAGATAAGGTGTTCAAAGATGTAATTGAACCATTAGAAAGTGTCAGTGTCAATCTGATACCAACCAGCAAAGAAGATATTCGAGATTTTGGTCCCCCTCAACAGGTTGCAGAAACTTTGATAAAGAAGGTTCTAGCTCCTTCTAATCAAAAAACGAAGTTAATCGAAGCATCAGAGCATGAAGTTGATGGGAAAGCATACTACACATTTGAGTTTGTAGCTCAAGCTCCAAACTACACTCGCCATGCTCTTAGCACAATTGCTGTTTCCAATGGAAAATTCTACACTTTGACGACCGGAGCAAATGAGAGGAGGTGGGAGAAAATGAAAGATAAATTGCGCACAGTTGTTGATTCCTTCACAATTTCAAACGTTTGA ATGGCTTCTCTGCATTGCTCCCCCTCTATCCATAAGTCCTTCTTCGTCAATTCTCTTCCTCAGAGACTACGTGGAAGATTTGTTTGCTGCAGAGCGGGGATTTCGTTTCTTGTCCGGGCCGAGCAAGCACACGGATCTTCCGGTAATGGTCAAGCCTGCAGTTCCGAAGATAGGCTTGGGAGACGCCAGCTACTAGCTGGCAGTTCCTTTATCACTTGGATTTCTCTTGCAGACATGAATTCCATGTCATTTGCTGCAGAATCAAAGAAAGGGTTTCTATCAGTTACTGACAAGACAGATGGTTACTCGTTCCTTTATCCATTTGGGTGGCAGGAAGTAGTCATTGATGGTCAAGATAAGGTGTTCAAAGATGTAATTGAACCATTAGAAAGTGTCAGTGTCAATCTGATACCAACCAGCAAAGAAGATATTCGAGATTTTGGTCCCCCTCAACAGGTTGCAGAAACTTTGATAAAGAAGGTTCTAGCTCCTTCTAATCAAAAAACGAAGTTAATCGAAGCATCAGAGCATGAAGTTGATGGGAAAGCATACTACACATTTGAGTTTGTAGCTCAAGCTCCAAACTACACTCGCCATGCTCTTAGCACAATTGCTGTTTCCAATGGAAAATTCTACACTTTGACGACCGGAGCAAATGAGAGGAGGTGGGAGAAAATGAAAGATAAATTGCGCACAGTTGTTGATTCCTTCACAATTTCAAACGTTTGA MASLHCSPSIHKSFFVNSLPQRLRGRFVCCRAGISFLVRAEQAHGSSGNGQACSSEDRLGRRQLLAGSSFITWISLADMNSMSFAAESKKGFLSVTDKTDGYSFLYPFGWQEVVIDGQDKVFKDVIEPLESVSVNLIPTSKEDIRDFGPPQQVAETLIKKVLAPSNQKTKLIEASEHEVDGKAYYTFEFVAQAPNYTRHALSTIAVSNGKFYTLTTGANERRWEKMKDKLRTVVDSFTISNV Homology
BLAST of Csor.00g122440 vs. ExPASy Swiss-Prot
Match: P82538 (PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPL1 PE=1 SV=1) HSP 1 Score: 287.7 bits (735), Expect = 1.2e-76 Identity = 153/241 (63.49%), Postives = 178/241 (73.86%), Query Frame = 0
BLAST of Csor.00g122440 vs. ExPASy Swiss-Prot
Match: O80634 (Photosynthetic NDH subunit of lumenal location 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL1 PE=1 SV=2) HSP 1 Score: 137.1 bits (344), Expect = 2.6e-31 Identity = 77/204 (37.75%), Postives = 107/204 (52.45%), Query Frame = 0
BLAST of Csor.00g122440 vs. ExPASy Swiss-Prot
Match: Q40407 (Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus pseudonarcissus OX=39639 GN=PSBP PE=2 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 3.7e-09 Identity = 56/206 (27.18%), Postives = 90/206 (43.69%), Query Frame = 0
BLAST of Csor.00g122440 vs. ExPASy Swiss-Prot
Match: O49080 (Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria agrestis OX=64177 GN=PSBP PE=2 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 2.4e-08 Identity = 50/177 (28.25%), Postives = 81/177 (45.76%), Query Frame = 0
BLAST of Csor.00g122440 vs. ExPASy Swiss-Prot
Match: Q04127 (Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana tabacum OX=4097 GN=PSBP3 PE=2 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 1.2e-07 Identity = 66/272 (24.26%), Postives = 106/272 (38.97%), Query Frame = 0
BLAST of Csor.00g122440 vs. NCBI nr
Match: KAG6602343.1 (PsbP-like protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 483 bits (1244), Expect = 3.79e-172 Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0
BLAST of Csor.00g122440 vs. NCBI nr
Match: XP_022921417.1 (psbP-like protein 1, chloroplastic [Cucurbita moschata]) HSP 1 Score: 481 bits (1238), Expect = 3.12e-171 Identity = 241/242 (99.59%), Postives = 241/242 (99.59%), Query Frame = 0
BLAST of Csor.00g122440 vs. NCBI nr
Match: XP_022990447.1 (psbP-like protein 1, chloroplastic [Cucurbita maxima]) HSP 1 Score: 478 bits (1229), Expect = 7.35e-170 Identity = 239/242 (98.76%), Postives = 241/242 (99.59%), Query Frame = 0
BLAST of Csor.00g122440 vs. NCBI nr
Match: XP_023523999.1 (psbP-like protein 1, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 475 bits (1223), Expect = 6.04e-169 Identity = 237/242 (97.93%), Postives = 240/242 (99.17%), Query Frame = 0
BLAST of Csor.00g122440 vs. NCBI nr
Match: XP_022134529.1 (psbP-like protein 1, chloroplastic [Momordica charantia]) HSP 1 Score: 443 bits (1139), Expect = 3.85e-156 Identity = 220/242 (90.91%), Postives = 231/242 (95.45%), Query Frame = 0
BLAST of Csor.00g122440 vs. ExPASy TrEMBL
Match: A0A6J1E0E5 (psbP-like protein 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111429701 PE=4 SV=1) HSP 1 Score: 481 bits (1238), Expect = 1.51e-171 Identity = 241/242 (99.59%), Postives = 241/242 (99.59%), Query Frame = 0
BLAST of Csor.00g122440 vs. ExPASy TrEMBL
Match: A0A6J1JIR8 (psbP-like protein 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487303 PE=4 SV=1) HSP 1 Score: 478 bits (1229), Expect = 3.56e-170 Identity = 239/242 (98.76%), Postives = 241/242 (99.59%), Query Frame = 0
BLAST of Csor.00g122440 vs. ExPASy TrEMBL
Match: A0A6J1BYZ6 (psbP-like protein 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006749 PE=4 SV=1) HSP 1 Score: 443 bits (1139), Expect = 1.87e-156 Identity = 220/242 (90.91%), Postives = 231/242 (95.45%), Query Frame = 0
BLAST of Csor.00g122440 vs. ExPASy TrEMBL
Match: A0A6J1JSB4 (psbP-like protein 1, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489333 PE=4 SV=1) HSP 1 Score: 433 bits (1114), Expect = 1.21e-152 Identity = 213/242 (88.02%), Postives = 228/242 (94.21%), Query Frame = 0
BLAST of Csor.00g122440 vs. ExPASy TrEMBL
Match: A0A0A0KS54 (PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G505230 PE=4 SV=1) HSP 1 Score: 432 bits (1112), Expect = 1.96e-152 Identity = 213/234 (91.03%), Postives = 227/234 (97.01%), Query Frame = 0
BLAST of Csor.00g122440 vs. TAIR 10
Match: AT3G55330.1 (PsbP-like protein 1 ) HSP 1 Score: 287.7 bits (735), Expect = 8.5e-78 Identity = 153/241 (63.49%), Postives = 178/241 (73.86%), Query Frame = 0
BLAST of Csor.00g122440 vs. TAIR 10
Match: AT2G39470.1 (PsbP-like protein 2 ) HSP 1 Score: 137.1 bits (344), Expect = 1.9e-32 Identity = 77/204 (37.75%), Postives = 107/204 (52.45%), Query Frame = 0
BLAST of Csor.00g122440 vs. TAIR 10
Match: AT2G39470.2 (PsbP-like protein 2 ) HSP 1 Score: 136.7 bits (343), Expect = 2.4e-32 Identity = 71/182 (39.01%), Postives = 99/182 (54.40%), Query Frame = 0
BLAST of Csor.00g122440 vs. TAIR 10
Match: AT2G39470.3 (PsbP-like protein 2 ) HSP 1 Score: 72.0 bits (175), Expect = 7.3e-13 Identity = 40/116 (34.48%), Postives = 57/116 (49.14%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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