Csor.00g119350 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTCTGCTCAACGCCTCATTATGTTCTTCCACTTGCAGAATCCCTTCCAGACCTCACCTTCCTCTTCCTCCCTCTATTCCCGCCTTTTCCAATCCTCAGGTAAACTTCACCTCTCAACTTCTTCTCTGCTTCTCTCATTTTGTACTGAAATGCTATGATTGCGACCAAAAAAATGAAGGCGATGAAGCACCAAGTGGAAGCTACTCGGAATTTTGTTCTTTCCGTTGGAGAATCCGCCTCTAAAGCCAGCTTCCTCGCTTTGATTTCCGCCTCCTTGTTCCTCGCTGATCCTGCGCTAGCTTTTAAGGTTAAATTGTTAAGCGTATATATCTTTCTTGTTCTGATTGTTTCGAGTGAATGTCTGTTGTTATATCTCTGTATTTGAAGCCGCTTCAATCTGATCATTCACTGATTTTGGGTGAACGGATTCGATTTCGTAATTAGGGCGGAGGTCCTTACGGTGCTGGGGTCACTAGAGGTCAGGATCTCACTGGGAAAGATTTCAGTGGGAAGACCTTGATCAAGCAAGATTTCAAAACGGTTTCTCCCTTTTCAAACAAATTCAATTTTTCCTCATGTTGTGTTTCTGAAATAGCTTTACGTTTCTTTTCTCACCAGTCTATATTACGGCAAGCTAATTTTAAAGGTGCAAAGTTATTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGTTCGTTGTTTCAGTGTTCGTAAGTAATTTTTATGAACTGCCAAGTCTTCCTTGGAGAACAAATTCCCATTAAAGCTGAGTTCAATTGTTTCTTTCTTTGCCTAATTGTTAGGAGCGGATCTTTCTGATGCTGATCTCCGAGGAGCAGACTTTTCTTTGGCCAATGTTACCAAGGTGATGTATGTTTATTTCTGTTAACAGTATCATCTTTAGTTGATTTCAATCTCATTCTATGCACAAAGTAGGTTATGTGATGCAGTGAAATCTGCAGTTTCTATCTGAGATTTTCCATTCAAGTTTTGGTTCATGTTGTGCTTTGATCTTAGAAGCCAATGAAATTATAGTCTTTATCCTCGATGGTTTCTTCTACTTTCGGCAGGCAAATTTAAGCAATGCCAACTTAGAGGGAGCGCTTGCTACAGGAAACACTTCTTTTCGTGGATCAATAATAAATGGAGCTGGTATGTATGTAAAGCTAACATTTATGTAGCTTTTAGTATTTCAAGGGCGATCCTCTCTCCAAAATTGTCTTAGTTAATAAAAGACATTAATATAGGTTGTTACTCCAACCCCTCTATTTTTATCAAATTTGAAATTCTAAACCTATAGCTCCAGTGTAACAACCCAAGTCTATTGGAAATCGATATTGTCCGCTTTGGTCGGTTACGTATTGTCATTTGTTTCACGATTCTAAAATGTGTCTAGGAGAGGTTTCCACACCCTTATAAGGAATGCTTCATTTCCCTTTCCAACCAATGTAGGATCTCACAATCCCAGACGTGCCTTTGCGAGATCCCAGATACGATTTTAAAACGCGTCTATTAAGAAGACACCAGGCTATAAAGGGGGTGGATTGTGAGATCCTACATTGGTTGGAGAGGGGAAAGAAGCATTCATTATAAGGGTTTGGAAACCTCTCCTTAGTAGACGCGTTTTCAAACTGTGAGACTAACGATAATATGTAACGGGCCAAAGTGAACAACATTTGCTAGCGATGAGCTTGAACCGTTACATTTAGTTACTCGTGTTAGGGGTGCAAACAAACTGTCACATTCGTTAGAAAAAGGAGTAATCTTAGGTAGATAAGGAAGGACAAATATCTCTATGAGGAAATACTGATGGTTAATTCATCTCATGATGTCAGACTTCACAGACGTGCCTTTGCGAGAGGATCAGCGGGAGTACCTCTGCAAAGTTGCAGATGGGTAAACAATACTTTCCTCTGTTCTCAAAATGGTTCAATAAAGATTAAAGAAAACATTTTAGATCCTTGAACTTTGATGAAAGTAACAATTTAGTCACTTTAACTTCAAATGTTACATGAAAGTAACATTTTGGATCCTTAAACTTCCATGAAAGTGGTTTTTACTGGTAAATAAACTAATGAACTCAGTCCTTTCTGTTGACAGGGTGAATCCAATGACTGGAAATGCAACCCGGGAGACCTTGCTCTGCAATTGA ATGGCTCTGCTCAACGCCTCATTATGTTCTTCCACTTGCAGAATCCCTTCCAGACCTCACCTTCCTCTTCCTCCCTCTATTCCCGCCTTTTCCAATCCTCAGGCGATGAAGCACCAAGTGGAAGCTACTCGGAATTTTGTTCTTTCCGTTGGAGAATCCGCCTCTAAAGCCAGCTTCCTCGCTTTGATTTCCGCCTCCTTGTTCCTCGCTGATCCTGCGCTAGCTTTTAAGGGCGGAGGTCCTTACGGTGCTGGGGTCACTAGAGGTCAGGATCTCACTGGGAAAGATTTCAGTGGGAAGACCTTGATCAAGCAAGATTTCAAAACGTCTATATTACGGCAAGCTAATTTTAAAGGTGCAAAGTTATTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGAGCGGATCTTTCTGATGCTGATCTCCGAGGAGCAGACTTTTCTTTGGCCAATGTTACCAAGGCAAATTTAAGCAATGCCAACTTAGAGGGAGCGCTTGCTACAGGAAACACTTCTTTTCGTGGATCAATAATAAATGGAGCTGACTTCACAGACGTGCCTTTGCGAGAGGATCAGCGGGAGTACCTCTGCAAAGTTGCAGATGGGGTGAATCCAATGACTGGAAATGCAACCCGGGAGACCTTGCTCTGCAATTGA ATGGCTCTGCTCAACGCCTCATTATGTTCTTCCACTTGCAGAATCCCTTCCAGACCTCACCTTCCTCTTCCTCCCTCTATTCCCGCCTTTTCCAATCCTCAGGCGATGAAGCACCAAGTGGAAGCTACTCGGAATTTTGTTCTTTCCGTTGGAGAATCCGCCTCTAAAGCCAGCTTCCTCGCTTTGATTTCCGCCTCCTTGTTCCTCGCTGATCCTGCGCTAGCTTTTAAGGGCGGAGGTCCTTACGGTGCTGGGGTCACTAGAGGTCAGGATCTCACTGGGAAAGATTTCAGTGGGAAGACCTTGATCAAGCAAGATTTCAAAACGTCTATATTACGGCAAGCTAATTTTAAAGGTGCAAAGTTATTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGAGCGGATCTTTCTGATGCTGATCTCCGAGGAGCAGACTTTTCTTTGGCCAATGTTACCAAGGCAAATTTAAGCAATGCCAACTTAGAGGGAGCGCTTGCTACAGGAAACACTTCTTTTCGTGGATCAATAATAAATGGAGCTGACTTCACAGACGTGCCTTTGCGAGAGGATCAGCGGGAGTACCTCTGCAAAGTTGCAGATGGGGTGAATCCAATGACTGGAAATGCAACCCGGGAGACCTTGCTCTGCAATTGA MALLNASLCSSTCRIPSRPHLPLPPSIPAFSNPQAMKHQVEATRNFVLSVGESASKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIINGADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN Homology
BLAST of Csor.00g119350 vs. ExPASy Swiss-Prot
Match: O22160 (Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g44920 PE=1 SV=2) HSP 1 Score: 288.9 bits (738), Expect = 4.8e-77 Identity = 156/224 (69.64%), Postives = 173/224 (77.23%), Query Frame = 0
BLAST of Csor.00g119350 vs. ExPASy Swiss-Prot
Match: B1WVN5 (Pentapeptide repeat protein Rfr32 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=rfr32 PE=1 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 2.0e-14 Identity = 55/126 (43.65%), Postives = 70/126 (55.56%), Query Frame = 0
BLAST of Csor.00g119350 vs. ExPASy Swiss-Prot
Match: Q8H1Q1 (Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TL20.3 PE=1 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 5.6e-09 Identity = 52/164 (31.71%), Postives = 81/164 (49.39%), Query Frame = 0
BLAST of Csor.00g119350 vs. ExPASy Swiss-Prot
Match: Q9SE95 (FH protein interacting protein FIP2 OS=Arabidopsis thaliana OX=3702 GN=FIP2 PE=1 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 5.3e-07 Identity = 42/111 (37.84%), Postives = 53/111 (47.75%), Query Frame = 0
BLAST of Csor.00g119350 vs. ExPASy Swiss-Prot
Match: P73709 (Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1819 PE=4 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 3.4e-06 Identity = 39/97 (40.21%), Postives = 52/97 (53.61%), Query Frame = 0
BLAST of Csor.00g119350 vs. NCBI nr
Match: KAG6602651.1 (Thylakoid lumenal 15 kDa protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 420 bits (1079), Expect = 8.60e-148 Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0
BLAST of Csor.00g119350 vs. NCBI nr
Match: XP_022991096.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 [Cucurbita maxima]) HSP 1 Score: 413 bits (1061), Expect = 4.77e-145 Identity = 215/218 (98.62%), Postives = 216/218 (99.08%), Query Frame = 0
BLAST of Csor.00g119350 vs. NCBI nr
Match: XP_022955551.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 [Cucurbita moschata]) HSP 1 Score: 412 bits (1060), Expect = 6.78e-145 Identity = 214/218 (98.17%), Postives = 215/218 (98.62%), Query Frame = 0
BLAST of Csor.00g119350 vs. NCBI nr
Match: XP_022955559.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 [Cucurbita moschata]) HSP 1 Score: 412 bits (1060), Expect = 6.78e-145 Identity = 214/218 (98.17%), Postives = 215/218 (98.62%), Query Frame = 0
BLAST of Csor.00g119350 vs. NCBI nr
Match: KAG7033337.1 (Thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 412 bits (1058), Expect = 1.37e-144 Identity = 215/218 (98.62%), Postives = 215/218 (98.62%), Query Frame = 0
BLAST of Csor.00g119350 vs. ExPASy TrEMBL
Match: A0A6J1JPS6 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487791 PE=4 SV=1) HSP 1 Score: 413 bits (1061), Expect = 2.31e-145 Identity = 215/218 (98.62%), Postives = 216/218 (99.08%), Query Frame = 0
BLAST of Csor.00g119350 vs. ExPASy TrEMBL
Match: A0A6J1GWM1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457530 PE=4 SV=1) HSP 1 Score: 412 bits (1060), Expect = 3.28e-145 Identity = 214/218 (98.17%), Postives = 215/218 (98.62%), Query Frame = 0
BLAST of Csor.00g119350 vs. ExPASy TrEMBL
Match: A0A6J1GU31 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457530 PE=4 SV=1) HSP 1 Score: 412 bits (1060), Expect = 3.28e-145 Identity = 214/218 (98.17%), Postives = 215/218 (98.62%), Query Frame = 0
BLAST of Csor.00g119350 vs. ExPASy TrEMBL
Match: A0A6J1JKT4 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487791 PE=4 SV=1) HSP 1 Score: 411 bits (1057), Expect = 9.40e-145 Identity = 214/218 (98.17%), Postives = 215/218 (98.62%), Query Frame = 0
BLAST of Csor.00g119350 vs. ExPASy TrEMBL
Match: A0A6J1BVJ8 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006104 PE=4 SV=1) HSP 1 Score: 372 bits (954), Expect = 4.70e-129 Identity = 194/218 (88.99%), Postives = 202/218 (92.66%), Query Frame = 0
BLAST of Csor.00g119350 vs. TAIR 10
Match: AT2G44920.2 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 288.9 bits (738), Expect = 3.4e-78 Identity = 156/224 (69.64%), Postives = 173/224 (77.23%), Query Frame = 0
BLAST of Csor.00g119350 vs. TAIR 10
Match: AT2G44920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 220.7 bits (561), Expect = 1.1e-57 Identity = 124/187 (66.31%), Postives = 139/187 (74.33%), Query Frame = 0
BLAST of Csor.00g119350 vs. TAIR 10
Match: AT1G12250.1 (Pentapeptide repeat-containing protein ) HSP 1 Score: 62.8 bits (151), Expect = 4.0e-10 Identity = 52/164 (31.71%), Postives = 81/164 (49.39%), Query Frame = 0
BLAST of Csor.00g119350 vs. TAIR 10
Match: AT1G12250.2 (Pentapeptide repeat-containing protein ) HSP 1 Score: 62.8 bits (151), Expect = 4.0e-10 Identity = 52/164 (31.71%), Postives = 81/164 (49.39%), Query Frame = 0
BLAST of Csor.00g119350 vs. TAIR 10
Match: AT5G55000.2 (potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein ) HSP 1 Score: 56.2 bits (134), Expect = 3.7e-08 Identity = 42/111 (37.84%), Postives = 53/111 (47.75%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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