Csor.00g119350 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g119350
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1
Location	Csor_Chr04: 20748742 .. 20750896 (-)
RNA-Seq Expression	Csor.00g119350
Synteny	Csor.00g119350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTGCTCAACGCCTCATTATGTTCTTCCACTTGCAGAATCCCTTCCAGACCTCACCTTCCTCTTCCTCCCTCTATTCCCGCCTTTTCCAATCCTCAGGTAAACTTCACCTCTCAACTTCTTCTCTGCTTCTCTCATTTTGTACTGAAATGCTATGATTGCGACCAAAAAAATGAAGGCGATGAAGCACCAAGTGGAAGCTACTCGGAATTTTGTTCTTTCCGTTGGAGAATCCGCCTCTAAAGCCAGCTTCCTCGCTTTGATTTCCGCCTCCTTGTTCCTCGCTGATCCTGCGCTAGCTTTTAAGGTTAAATTGTTAAGCGTATATATCTTTCTTGTTCTGATTGTTTCGAGTGAATGTCTGTTGTTATATCTCTGTATTTGAAGCCGCTTCAATCTGATCATTCACTGATTTTGGGTGAACGGATTCGATTTCGTAATTAGGGCGGAGGTCCTTACGGTGCTGGGGTCACTAGAGGTCAGGATCTCACTGGGAAAGATTTCAGTGGGAAGACCTTGATCAAGCAAGATTTCAAAACGGTTTCTCCCTTTTCAAACAAATTCAATTTTTCCTCATGTTGTGTTTCTGAAATAGCTTTACGTTTCTTTTCTCACCAGTCTATATTACGGCAAGCTAATTTTAAAGGTGCAAAGTTATTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGTTCGTTGTTTCAGTGTTCGTAAGTAATTTTTATGAACTGCCAAGTCTTCCTTGGAGAACAAATTCCCATTAAAGCTGAGTTCAATTGTTTCTTTCTTTGCCTAATTGTTAGGAGCGGATCTTTCTGATGCTGATCTCCGAGGAGCAGACTTTTCTTTGGCCAATGTTACCAAGGTGATGTATGTTTATTTCTGTTAACAGTATCATCTTTAGTTGATTTCAATCTCATTCTATGCACAAAGTAGGTTATGTGATGCAGTGAAATCTGCAGTTTCTATCTGAGATTTTCCATTCAAGTTTTGGTTCATGTTGTGCTTTGATCTTAGAAGCCAATGAAATTATAGTCTTTATCCTCGATGGTTTCTTCTACTTTCGGCAGGCAAATTTAAGCAATGCCAACTTAGAGGGAGCGCTTGCTACAGGAAACACTTCTTTTCGTGGATCAATAATAAATGGAGCTGGTATGTATGTAAAGCTAACATTTATGTAGCTTTTAGTATTTCAAGGGCGATCCTCTCTCCAAAATTGTCTTAGTTAATAAAAGACATTAATATAGGTTGTTACTCCAACCCCTCTATTTTTATCAAATTTGAAATTCTAAACCTATAGCTCCAGTGTAACAACCCAAGTCTATTGGAAATCGATATTGTCCGCTTTGGTCGGTTACGTATTGTCATTTGTTTCACGATTCTAAAATGTGTCTAGGAGAGGTTTCCACACCCTTATAAGGAATGCTTCATTTCCCTTTCCAACCAATGTAGGATCTCACAATCCCAGACGTGCCTTTGCGAGATCCCAGATACGATTTTAAAACGCGTCTATTAAGAAGACACCAGGCTATAAAGGGGGTGGATTGTGAGATCCTACATTGGTTGGAGAGGGGAAAGAAGCATTCATTATAAGGGTTTGGAAACCTCTCCTTAGTAGACGCGTTTTCAAACTGTGAGACTAACGATAATATGTAACGGGCCAAAGTGAACAACATTTGCTAGCGATGAGCTTGAACCGTTACATTTAGTTACTCGTGTTAGGGGTGCAAACAAACTGTCACATTCGTTAGAAAAAGGAGTAATCTTAGGTAGATAAGGAAGGACAAATATCTCTATGAGGAAATACTGATGGTTAATTCATCTCATGATGTCAGACTTCACAGACGTGCCTTTGCGAGAGGATCAGCGGGAGTACCTCTGCAAAGTTGCAGATGGGTAAACAATACTTTCCTCTGTTCTCAAAATGGTTCAATAAAGATTAAAGAAAACATTTTAGATCCTTGAACTTTGATGAAAGTAACAATTTAGTCACTTTAACTTCAAATGTTACATGAAAGTAACATTTTGGATCCTTAAACTTCCATGAAAGTGGTTTTTACTGGTAAATAAACTAATGAACTCAGTCCTTTCTGTTGACAGGGTGAATCCAATGACTGGAAATGCAACCCGGGAGACCTTGCTCTGCAATTGA

mRNA sequence

ATGGCTCTGCTCAACGCCTCATTATGTTCTTCCACTTGCAGAATCCCTTCCAGACCTCACCTTCCTCTTCCTCCCTCTATTCCCGCCTTTTCCAATCCTCAGGCGATGAAGCACCAAGTGGAAGCTACTCGGAATTTTGTTCTTTCCGTTGGAGAATCCGCCTCTAAAGCCAGCTTCCTCGCTTTGATTTCCGCCTCCTTGTTCCTCGCTGATCCTGCGCTAGCTTTTAAGGGCGGAGGTCCTTACGGTGCTGGGGTCACTAGAGGTCAGGATCTCACTGGGAAAGATTTCAGTGGGAAGACCTTGATCAAGCAAGATTTCAAAACGTCTATATTACGGCAAGCTAATTTTAAAGGTGCAAAGTTATTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGAGCGGATCTTTCTGATGCTGATCTCCGAGGAGCAGACTTTTCTTTGGCCAATGTTACCAAGGCAAATTTAAGCAATGCCAACTTAGAGGGAGCGCTTGCTACAGGAAACACTTCTTTTCGTGGATCAATAATAAATGGAGCTGACTTCACAGACGTGCCTTTGCGAGAGGATCAGCGGGAGTACCTCTGCAAAGTTGCAGATGGGGTGAATCCAATGACTGGAAATGCAACCCGGGAGACCTTGCTCTGCAATTGA

Coding sequence (CDS)

ATGGCTCTGCTCAACGCCTCATTATGTTCTTCCACTTGCAGAATCCCTTCCAGACCTCACCTTCCTCTTCCTCCCTCTATTCCCGCCTTTTCCAATCCTCAGGCGATGAAGCACCAAGTGGAAGCTACTCGGAATTTTGTTCTTTCCGTTGGAGAATCCGCCTCTAAAGCCAGCTTCCTCGCTTTGATTTCCGCCTCCTTGTTCCTCGCTGATCCTGCGCTAGCTTTTAAGGGCGGAGGTCCTTACGGTGCTGGGGTCACTAGAGGTCAGGATCTCACTGGGAAAGATTTCAGTGGGAAGACCTTGATCAAGCAAGATTTCAAAACGTCTATATTACGGCAAGCTAATTTTAAAGGTGCAAAGTTATTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGAGCGGATCTTTCTGATGCTGATCTCCGAGGAGCAGACTTTTCTTTGGCCAATGTTACCAAGGCAAATTTAAGCAATGCCAACTTAGAGGGAGCGCTTGCTACAGGAAACACTTCTTTTCGTGGATCAATAATAAATGGAGCTGACTTCACAGACGTGCCTTTGCGAGAGGATCAGCGGGAGTACCTCTGCAAAGTTGCAGATGGGGTGAATCCAATGACTGGAAATGCAACCCGGGAGACCTTGCTCTGCAATTGA

Protein sequence

MALLNASLCSSTCRIPSRPHLPLPPSIPAFSNPQAMKHQVEATRNFVLSVGESASKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIINGADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN

Homology

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BLAST of Csor.00g119350 vs. ExPASy Swiss-Prot
Match: O22160 (Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g44920 PE=1 SV=2)

HSP 1 Score: 288.9 bits (738), Expect = 4.8e-77
Identity = 156/224 (69.64%), Postives = 173/224 (77.23%), Query Frame = 0


Query: 1   MALLNASLCSSTCRIPSRPHLPLPPS------IPAFSNPQAMKHQVEATRNFVLSVGESA 60
           M +L+     S C I  +P L  P S      I    + +  +      R+ V S+GE  
Sbjct: 1   MVILSNVSLFSCCNISQKPSLFSPSSRSSHCPIRCSQSQEGKEVVTSPLRSVVWSLGEEV 60

Query: 61  SKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQ 120
           SK S  AL+SASLF  DPALAFKGGGPYG GVTRGQDL+GKDFSG+TLI+QDFKTSILRQ
Sbjct: 61  SKRSLFALVSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQ 120

Query: 121 ANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFR 180
           ANFKGAKLLGASFFDADLTGADLS+ADLRGADFSLANVTK NL+NANLEGA  TGNTSF+
Sbjct: 121 ANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTSFK 180

Query: 181 GSIINGADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN 219
           GS I GADFTDVPLR+DQR YLCKVADGVN  TGNATR+TLLCN
Sbjct: 181 GSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCN 224

[Close]

BLAST of Csor.00g119350 vs. ExPASy Swiss-Prot
Match: B1WVN5 (Pentapeptide repeat protein Rfr32 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=rfr32 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-14
Identity = 55/126 (43.65%), Postives = 70/126 (55.56%), Query Frame = 0


Query: 92  LTGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLAN 151
           L G+DFSGK+L    F  + L  +NF  A L GA F  + L GADL  ADL      L +
Sbjct: 54  LIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTS 113

Query: 152 VTKANLSNANLEGALATGNTSFRGSIINGADFTDVPLREDQREYLCKVADGVNPMTGNAT 211
              A+L+NA L  A+    T F  + I GADF+   L   + + LC  ADGVNP TG +T
Sbjct: 114 FKGADLTNAVLTEAIMM-RTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVST 173

Query: 212 RETLLC 218
           RE+L C
Sbjct: 174 RESLGC 178

[Close]

BLAST of Csor.00g119350 vs. ExPASy Swiss-Prot
Match: Q8H1Q1 (Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TL20.3 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.6e-09
Identity = 52/164 (31.71%), Postives = 81/164 (49.39%), Query Frame = 0


Query: 54  ASKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 113
           AS +   A+   + F AD    F  G     G     DL+    S +   + +F ++ +R
Sbjct: 81  ASSSGVPAMAELNRFEADTRGEFGIGSAAQYG---SADLSKTVHSNENFRRANFTSADMR 140

Query: 114 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 173
           +++F G+   GA    A    A+ S ADL         + +ANL+NA L  ++ T  +  
Sbjct: 141 ESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLT-RSDL 200

Query: 174 RGSIINGADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLC 218
            G+ I GADF+D  +   Q++ LCK A G NP+TG  TR++L C
Sbjct: 201 GGAKIEGADFSDAVIDLLQKQALCKYATGTNPLTGVDTRKSLGC 240

[Close]

BLAST of Csor.00g119350 vs. ExPASy Swiss-Prot
Match: Q9SE95 (FH protein interacting protein FIP2 OS=Arabidopsis thaliana OX=3702 GN=FIP2 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.3e-07
Identity = 42/111 (37.84%), Postives = 53/111 (47.75%), Query Frame = 0


Query: 88  RGQDLTGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADF 147
           R  D  G  F    L + +F ++ LR A   G  L  A+  DA L G     ADLR A  
Sbjct: 174 RNADAEGSIFHNAILRECEFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRTAHL 233

Query: 148 SLANVTKANLSNANLEGALATG----NTSFRGSIINGADFTDVPLREDQRE 195
             A++T ANL  ANLEGA   G    N +F+G+ +  A    V LRE   E
Sbjct: 234 QNADLTNANLEGANLEGANLKGAKLSNANFKGANLQRAYLRHVNLREAHME 284

[Close]

BLAST of Csor.00g119350 vs. ExPASy Swiss-Prot
Match: P73709 (Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1819 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.4e-06
Identity = 39/97 (40.21%), Postives = 52/97 (53.61%), Query Frame = 0


Query: 91  DLTGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSD-----ADLRGA 150
           +L   + SG +L + D   + LR ANF GA L GA   D+D+T A L D     ADLRGA
Sbjct: 61  NLVAANLSGASLNQADLAGADLRSANFHGAMLQGAILRDSDMTLATLQDTNLIGADLRGA 120

Query: 151 DFSLANVTKANLSNANLEGALATGNTSFRGSIINGAD 183
           D S A +T A L  AN+        T+ + +I+  AD
Sbjct: 121 DLSGATLTGACLRGANMRQEKKGYYTNLQAAILGRAD 157

[Close]

BLAST of Csor.00g119350 vs. NCBI nr
Match: KAG6602651.1 (Thylakoid lumenal 15 kDa protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 420 bits (1079), Expect = 8.60e-148
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MALLNASLCSSTCRIPSRPHLPLPPSIPAFSNPQAMKHQVEATRNFVLSVGESASKASFL 60
           MALLNASLCSSTCRIPSRPHLPLPPSIPAFSNPQAMKHQVEATRNFVLSVGESASKASFL
Sbjct: 1   MALLNASLCSSTCRIPSRPHLPLPPSIPAFSNPQAMKHQVEATRNFVLSVGESASKASFL 60

Query: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA 120
           ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA
Sbjct: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA 120

Query: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING 180
           KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING
Sbjct: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING 180

Query: 181 ADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN 218
           ADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN 218

[Close]

BLAST of Csor.00g119350 vs. NCBI nr
Match: XP_022991096.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 413 bits (1061), Expect = 4.77e-145
Identity = 215/218 (98.62%), Postives = 216/218 (99.08%), Query Frame = 0


Query: 1   MALLNASLCSSTCRIPSRPHLPLPPSIPAFSNPQAMKHQVEATRNFVLSVGESASKASFL 60
           MALLNASLCSSTCRIPSR HLPLPPSIPAFSNP+AMKHQVEATRNFVLSVGESASKASFL
Sbjct: 1   MALLNASLCSSTCRIPSRSHLPLPPSIPAFSNPRAMKHQVEATRNFVLSVGESASKASFL 60

Query: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA 120
           ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA
Sbjct: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA 120

Query: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING 180
           KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING
Sbjct: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING 180

Query: 181 ADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN 218
           ADFTDVPLREDQREYLCKVADGVNP TGNATRETLLCN
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Csor.00g119350 vs. NCBI nr
Match: XP_022955551.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 412 bits (1060), Expect = 6.78e-145
Identity = 214/218 (98.17%), Postives = 215/218 (98.62%), Query Frame = 0


Query: 1   MALLNASLCSSTCRIPSRPHLPLPPSIPAFSNPQAMKHQVEATRNFVLSVGESASKASFL 60
           MALLNASLCSSTCRIPSRPHLPLPPS+ AFSNPQ MKHQVEATRNFVLSVGESASKASFL
Sbjct: 1   MALLNASLCSSTCRIPSRPHLPLPPSVSAFSNPQTMKHQVEATRNFVLSVGESASKASFL 60

Query: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA 120
           ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA
Sbjct: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA 120

Query: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING 180
           KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING
Sbjct: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING 180

Query: 181 ADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN 218
           ADFTDVPLREDQREYLCKVADGVNP TGNATRETLLCN
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Csor.00g119350 vs. NCBI nr
Match: XP_022955559.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 412 bits (1060), Expect = 6.78e-145
Identity = 214/218 (98.17%), Postives = 215/218 (98.62%), Query Frame = 0


Query: 1   MALLNASLCSSTCRIPSRPHLPLPPSIPAFSNPQAMKHQVEATRNFVLSVGESASKASFL 60
           MALLNASLCSSTCRIPSRPHLPLPPS+ AFSNPQ MKHQVEATRNFVLSVGESASKASFL
Sbjct: 1   MALLNASLCSSTCRIPSRPHLPLPPSVSAFSNPQVMKHQVEATRNFVLSVGESASKASFL 60

Query: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA 120
           ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA
Sbjct: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA 120

Query: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING 180
           KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING
Sbjct: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING 180

Query: 181 ADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN 218
           ADFTDVPLREDQREYLCKVADGVNP TGNATRETLLCN
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Csor.00g119350 vs. NCBI nr
Match: KAG7033337.1 (Thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 412 bits (1058), Expect = 1.37e-144
Identity = 215/218 (98.62%), Postives = 215/218 (98.62%), Query Frame = 0


Query: 1   MALLNASLCSSTCRIPSRPHLPLPPSIPAFSNPQAMKHQVEATRNFVLSVGESASKASFL 60
           MALLNASLCSSTCRIPSR HLPLPPSI AFSNPQAMKHQVEATRNFVLSVGESASKASFL
Sbjct: 1   MALLNASLCSSTCRIPSRTHLPLPPSISAFSNPQAMKHQVEATRNFVLSVGESASKASFL 60

Query: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA 120
           ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA
Sbjct: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA 120

Query: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING 180
           KLLGASFFDADLTGADLSDADLRGADFSLANVTKANL NANLEGALATGNTSFRGSIING
Sbjct: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLRNANLEGALATGNTSFRGSIING 180

Query: 181 ADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN 218
           ADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN 218

[Close]

BLAST of Csor.00g119350 vs. ExPASy TrEMBL
Match: A0A6J1JPS6 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487791 PE=4 SV=1)

HSP 1 Score: 413 bits (1061), Expect = 2.31e-145
Identity = 215/218 (98.62%), Postives = 216/218 (99.08%), Query Frame = 0


Query: 1   MALLNASLCSSTCRIPSRPHLPLPPSIPAFSNPQAMKHQVEATRNFVLSVGESASKASFL 60
           MALLNASLCSSTCRIPSR HLPLPPSIPAFSNP+AMKHQVEATRNFVLSVGESASKASFL
Sbjct: 1   MALLNASLCSSTCRIPSRSHLPLPPSIPAFSNPRAMKHQVEATRNFVLSVGESASKASFL 60

Query: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA 120
           ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA
Sbjct: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA 120

Query: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING 180
           KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING
Sbjct: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING 180

Query: 181 ADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN 218
           ADFTDVPLREDQREYLCKVADGVNP TGNATRETLLCN
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Csor.00g119350 vs. ExPASy TrEMBL
Match: A0A6J1GWM1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457530 PE=4 SV=1)

HSP 1 Score: 412 bits (1060), Expect = 3.28e-145
Identity = 214/218 (98.17%), Postives = 215/218 (98.62%), Query Frame = 0


Query: 1   MALLNASLCSSTCRIPSRPHLPLPPSIPAFSNPQAMKHQVEATRNFVLSVGESASKASFL 60
           MALLNASLCSSTCRIPSRPHLPLPPS+ AFSNPQ MKHQVEATRNFVLSVGESASKASFL
Sbjct: 1   MALLNASLCSSTCRIPSRPHLPLPPSVSAFSNPQVMKHQVEATRNFVLSVGESASKASFL 60

Query: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA 120
           ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA
Sbjct: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA 120

Query: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING 180
           KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING
Sbjct: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING 180

Query: 181 ADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN 218
           ADFTDVPLREDQREYLCKVADGVNP TGNATRETLLCN
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Csor.00g119350 vs. ExPASy TrEMBL
Match: A0A6J1GU31 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457530 PE=4 SV=1)

HSP 1 Score: 412 bits (1060), Expect = 3.28e-145
Identity = 214/218 (98.17%), Postives = 215/218 (98.62%), Query Frame = 0


Query: 1   MALLNASLCSSTCRIPSRPHLPLPPSIPAFSNPQAMKHQVEATRNFVLSVGESASKASFL 60
           MALLNASLCSSTCRIPSRPHLPLPPS+ AFSNPQ MKHQVEATRNFVLSVGESASKASFL
Sbjct: 1   MALLNASLCSSTCRIPSRPHLPLPPSVSAFSNPQTMKHQVEATRNFVLSVGESASKASFL 60

Query: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA 120
           ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA
Sbjct: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA 120

Query: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING 180
           KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING
Sbjct: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING 180

Query: 181 ADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN 218
           ADFTDVPLREDQREYLCKVADGVNP TGNATRETLLCN
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Csor.00g119350 vs. ExPASy TrEMBL
Match: A0A6J1JKT4 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487791 PE=4 SV=1)

HSP 1 Score: 411 bits (1057), Expect = 9.40e-145
Identity = 214/218 (98.17%), Postives = 215/218 (98.62%), Query Frame = 0


Query: 1   MALLNASLCSSTCRIPSRPHLPLPPSIPAFSNPQAMKHQVEATRNFVLSVGESASKASFL 60
           MALLNASLCSSTCRIPSR HLPLPPSIPAFSNP+ MKHQVEATRNFVLSVGESASKASFL
Sbjct: 1   MALLNASLCSSTCRIPSRSHLPLPPSIPAFSNPRVMKHQVEATRNFVLSVGESASKASFL 60

Query: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA 120
           ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA
Sbjct: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA 120

Query: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING 180
           KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING
Sbjct: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING 180

Query: 181 ADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN 218
           ADFTDVPLREDQREYLCKVADGVNP TGNATRETLLCN
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Csor.00g119350 vs. ExPASy TrEMBL
Match: A0A6J1BVJ8 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006104 PE=4 SV=1)

HSP 1 Score: 372 bits (954), Expect = 4.70e-129
Identity = 194/218 (88.99%), Postives = 202/218 (92.66%), Query Frame = 0


Query: 1   MALLNASLCSSTCRIPSRPHLPLPPSIPAFSNPQAMKHQVEATRNFVLSVGESASKASFL 60
           MALLNASLC ST RIP  PHL LPPSI A   P  +K Q+EA+RN +LSVGESASKA+FL
Sbjct: 1   MALLNASLCCSTSRIPPAPHLHLPPSISAHPTPPVLKQQLEASRNLILSVGESASKATFL 60

Query: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA 120
           AL+SASLFLADPALAFKGGGPYGAGVTRGQDL+GKDFSGKTLIKQDFKTSILRQANFKGA
Sbjct: 61  ALLSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA 120

Query: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING 180
           KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGS I G
Sbjct: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTIEG 180

Query: 181 ADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN 218
           ADFTDVPLREDQREYLCKVADGVNP TGNATR+TLLCN
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPTTGNATRDTLLCN 218

[Close]

BLAST of Csor.00g119350 vs. TAIR 10
Match: AT2G44920.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 288.9 bits (738), Expect = 3.4e-78
Identity = 156/224 (69.64%), Postives = 173/224 (77.23%), Query Frame = 0


Query: 1   MALLNASLCSSTCRIPSRPHLPLPPS------IPAFSNPQAMKHQVEATRNFVLSVGESA 60
           M +L+     S C I  +P L  P S      I    + +  +      R+ V S+GE  
Sbjct: 1   MVILSNVSLFSCCNISQKPSLFSPSSRSSHCPIRCSQSQEGKEVVTSPLRSVVWSLGEEV 60

Query: 61  SKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQ 120
           SK S  AL+SASLF  DPALAFKGGGPYG GVTRGQDL+GKDFSG+TLI+QDFKTSILRQ
Sbjct: 61  SKRSLFALVSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQ 120

Query: 121 ANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFR 180
           ANFKGAKLLGASFFDADLTGADLS+ADLRGADFSLANVTK NL+NANLEGA  TGNTSF+
Sbjct: 121 ANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTSFK 180

Query: 181 GSIINGADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN 219
           GS I GADFTDVPLR+DQR YLCKVADGVN  TGNATR+TLLCN
Sbjct: 181 GSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCN 224

[Close]

BLAST of Csor.00g119350 vs. TAIR 10
Match: AT2G44920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 220.7 bits (561), Expect = 1.1e-57
Identity = 124/187 (66.31%), Postives = 139/187 (74.33%), Query Frame = 0


Query: 1   MALLNASLCSSTCRIPSRPHLPLPPS------IPAFSNPQAMKHQVEATRNFVLSVGESA 60
           M +L+     S C I  +P L  P S      I    + +  +      R+ V S+GE  
Sbjct: 1   MVILSNVSLFSCCNISQKPSLFSPSSRSSHCPIRCSQSQEGKEVVTSPLRSVVWSLGEEV 60

Query: 61  SKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQ 120
           SK S  AL+SASLF  DPALAFKGGGPYG GVTRGQDL+GKDFSG+TLI+QDFKTSILRQ
Sbjct: 61  SKRSLFALVSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQ 120

Query: 121 ANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFR 180
           ANFKGAKLLGASFFDADLTGADLS+ADLRGADFSLANVTK NL+NANLEGA  TGNTSF+
Sbjct: 121 ANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTSFK 180

Query: 181 GSIINGA 182
           GS I GA
Sbjct: 181 GSNITGA 187

[Close]

BLAST of Csor.00g119350 vs. TAIR 10
Match: AT1G12250.1 (Pentapeptide repeat-containing protein )

HSP 1 Score: 62.8 bits (151), Expect = 4.0e-10
Identity = 52/164 (31.71%), Postives = 81/164 (49.39%), Query Frame = 0


Query: 54  ASKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 113
           AS +   A+   + F AD    F  G     G     DL+    S +   + +F ++ +R
Sbjct: 81  ASSSGVPAMAELNRFEADTRGEFGIGSAAQYG---SADLSKTVHSNENFRRANFTSADMR 140

Query: 114 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 173
           +++F G+   GA    A    A+ S ADL         + +ANL+NA L  ++ T  +  
Sbjct: 141 ESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLT-RSDL 200

Query: 174 RGSIINGADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLC 218
            G+ I GADF+D  +   Q++ LCK A G NP+TG  TR++L C
Sbjct: 201 GGAKIEGADFSDAVIDLLQKQALCKYATGTNPLTGVDTRKSLGC 240

[Close]

BLAST of Csor.00g119350 vs. TAIR 10
Match: AT1G12250.2 (Pentapeptide repeat-containing protein )

HSP 1 Score: 62.8 bits (151), Expect = 4.0e-10
Identity = 52/164 (31.71%), Postives = 81/164 (49.39%), Query Frame = 0


Query: 54  ASKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 113
           AS +   A+   + F AD    F  G     G     DL+    S +   + +F ++ +R
Sbjct: 7   ASSSGVPAMAELNRFEADTRGEFGIGSAAQYG---SADLSKTVHSNENFRRANFTSADMR 66

Query: 114 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 173
           +++F G+   GA    A    A+ S ADL         + +ANL+NA L  ++ T  +  
Sbjct: 67  ESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLT-RSDL 126

Query: 174 RGSIINGADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLC 218
            G+ I GADF+D  +   Q++ LCK A G NP+TG  TR++L C
Sbjct: 127 GGAKIEGADFSDAVIDLLQKQALCKYATGTNPLTGVDTRKSLGC 166

[Close]

BLAST of Csor.00g119350 vs. TAIR 10
Match: AT5G55000.2 (potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein )

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-08
Identity = 42/111 (37.84%), Postives = 53/111 (47.75%), Query Frame = 0


Query: 88  RGQDLTGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADF 147
           R  D  G  F    L + +F ++ LR A   G  L  A+  DA L G     ADLR A  
Sbjct: 174 RNADAEGSIFHNAILRECEFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRTAHL 233

Query: 148 SLANVTKANLSNANLEGALATG----NTSFRGSIINGADFTDVPLREDQRE 195
             A++T ANL  ANLEGA   G    N +F+G+ +  A    V LRE   E
Sbjct: 234 QNADLTNANLEGANLEGANLKGAKLSNANFKGANLQRAYLRHVNLREAHME 284

The following BLAST results are available for this feature:

BLAST of Csor.00g119350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22160	4.8e-77	69.64	Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]
B1WVN5	2.0e-14	43.65	Pentapeptide repeat protein Rfr32 OS=Crocosphaera subtropica (strain ATCC 51142 ...	[more]
Q8H1Q1	5.6e-09	31.71	Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SE95	5.3e-07	37.84	FH protein interacting protein FIP2 OS=Arabidopsis thaliana OX=3702 GN=FIP2 PE=1...	[more]
P73709	3.4e-06	40.21	Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) ...	[more]

BLAST of Csor.00g119350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602651.1	8.60e-148	100.00	Thylakoid lumenal 15 kDa protein 1, chloroplastic, partial [Cucurbita argyrosper...	[more]
XP_022991096.1	4.77e-145	98.62	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 [Cucurbita maxima]	[more]
XP_022955551.1	6.78e-145	98.17	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 [Cucurbita moschata...	[more]
XP_022955559.1	6.78e-145	98.17	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 [Cucurbita moschata...	[more]
KAG7033337.1	1.37e-144	98.62	Thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucurbita argyrosperma subsp....	[more]

BLAST of Csor.00g119350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JPS6	2.31e-145	98.62	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Cucurbita maxima...	[more]
A0A6J1GWM1	3.28e-145	98.17	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 OS=Cucurbita moscha...	[more]
A0A6J1GU31	3.28e-145	98.17	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Cucurbita moscha...	[more]
A0A6J1JKT4	9.40e-145	98.17	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 OS=Cucurbita maxima...	[more]
A0A6J1BVJ8	4.70e-129	88.99	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Momordica charan...	[more]

BLAST of Csor.00g119350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44920.2	3.4e-78	69.64	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G44920.1	1.1e-57	66.31	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G12250.1	4.0e-10	31.71	Pentapeptide repeat-containing protein	[more]
AT1G12250.2	4.0e-10	31.71	Pentapeptide repeat-containing protein	[more]
AT5G55000.2	3.7e-08	37.84	potassium channel tetramerisation domain-containing protein / pentapeptide repea...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.160.20.80		coord: 75..218 e-value: 1.1E-46 score: 159.6
None	No IPR available	SUPERFAMILY	141571	Pentapeptide repeat-like	coord: 87..189
IPR001646	Pentapeptide repeat	PFAM	PF00805	Pentapeptide	coord: 110..148 e-value: 1.1E-12 score: 47.3
IPR044213	Thylakoid lumenal 15kDa protein 1-like	PANTHER	PTHR47200	THYLAKOID LUMENAL 15 KDA PROTEIN 1, CHLOROPLASTIC	coord: 17..218

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g119350.m01	Csor.00g119350.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009534	chloroplast thylakoid