Csor.00g117810 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g117810
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr12: 4945623 .. 4946566 (-)
RNA-Seq ExpressionCsor.00g117810
SyntenyCsor.00g117810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGTGGATCCAGCGATATTCGAGAACTTGCATCCATTACCGTGTTTTTGTGCCCTTCGTTCTCACGCTGGAAAAATCATGAACATCAAAGTTTGGCACACCCGAGGAGGATCGCTTCGAGGAGTTGTTGGAGAAGACGGTACGAGCGAAATTGTTTTCTGTAATGAGGTCTTCTGAGCTCAAAGTTTTGCAGTTTTGAGGTGAGATCTTAGACCATCTAAATAGTTTCATGTTCAATTATGATGTATCCGCATATGTTTCATGTAATATTGAAAAATTAAAAAAGAAAAAAAGAACATGGAAAACTAATATAATAATGTTCTTGTTGTTTATTATAATCGAGCATGGCAGCGAAATCATTGACCAACGTCTCACTAATCGACAACAACTTGTATAGAATCTTGTTGCCCGTTCGTCTTCAACCTTATATTTTTCAAAAGGGTTTCACAGCTAGTAGACATTTTCGAGTTTTCTCATCGATCAATTTAAAGTTTAGTTGCTTATACATAATTCACTCTTTTTTCTTCTATTGGATTCCATTGCTATGTCATTCTTAGATTTACGACCATTCAAAGCATCTCTGTTTGTTCCTAGTCGTTAATTGGTCATGGTCGGGGTAGGGGTCTCGGGGTGTTTCGCCCTCCAATATCACTTCGCGCTTGTGAGAGTGAGTGCTCAATTATCTTACTTAAATCGCGTTTACCTCGAAATGTTGTTGATGCAGTATCGTTCACCCTTTGATATAAAGTGCATAGTTTATCGAGGAGGAGATCGTACGCTCGTTGGCTGTCGAAAAGAGAAGAAACTCATTGTGAAGTAAGGGACAACCAATTGACCGGCTAGTTCAATCCAATACTCAAATCTTACCTCAACTTTAAGTTATTTTCATTACTTCAACCTCAAAATGTTGTTGATGCAGCATCGTTTACCCTCTATCATAA

mRNA sequence

ATGATCGTGGATCCAGCGATATTCGAGAACTTGCATCCATTACCGTGTTTTTGTGCCCTTCGTTCTCACGCTGGAAAAATCATGAACATCAAAGTTTGGCACACCCGAGGAGGATCGCTTCGAGGAGTTGTTGGAGAAGACGGGGTCTCGGGGTGTTTCGCCCTCCAATATCACTTCGCGCTTGTGAGAGTGAGTGCTCAATTATCTTACTTAAATCGCGTTTACCTCGAAATGTTGTTGATGCAGTATCGTTCACCCTTTGATATAAAGTGCATAGTTTATCGAGGAGGAGATCGTACGCTCGTTGGCTGTCGAAAAGAGAAGAAACTCATTGTGAACATCGTTTACCCTCTATCATAA

Coding sequence (CDS)

ATGATCGTGGATCCAGCGATATTCGAGAACTTGCATCCATTACCGTGTTTTTGTGCCCTTCGTTCTCACGCTGGAAAAATCATGAACATCAAAGTTTGGCACACCCGAGGAGGATCGCTTCGAGGAGTTGTTGGAGAAGACGGGGTCTCGGGGTGTTTCGCCCTCCAATATCACTTCGCGCTTGTGAGAGTGAGTGCTCAATTATCTTACTTAAATCGCGTTTACCTCGAAATGTTGTTGATGCAGTATCGTTCACCCTTTGATATAAAGTGCATAGTTTATCGAGGAGGAGATCGTACGCTCGTTGGCTGTCGAAAAGAGAAGAAACTCATTGTGAACATCGTTTACCCTCTATCATAA

Protein sequence

MIVDPAIFENLHPLPCFCALRSHAGKIMNIKVWHTRGGSLRGVVGEDGVSGCFALQYHFALVRVSAQLSYLNRVYLEMLLMQYRSPFDIKCIVYRGGDRTLVGCRKEKKLIVNIVYPLS
Homology
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BLAST of Csor.00g117810 vs. NCBI nr
Match: KAG6585879.1 (hypothetical protein SDJN03_18612, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 249 bits (637), Expect = 1.21e-83
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MIVDPAIFENLHPLPCFCALRSHAGKIMNIKVWHTRGGSLRGVVGEDGVSGCFALQYHFA 60
           MIVDPAIFENLHPLPCFCALRSHAGKIMNIKVWHTRGGSLRGVVGEDGVSGCFALQYHFA
Sbjct: 1   MIVDPAIFENLHPLPCFCALRSHAGKIMNIKVWHTRGGSLRGVVGEDGVSGCFALQYHFA 60

Query: 61  LVRVSAQLSYLNRVYLEMLLMQYRSPFDIKCIVYRGGDRTLVGCRKEKKLIVNIVYPLS 119
           LVRVSAQLSYLNRVYLEMLLMQYRSPFDIKCIVYRGGDRTLVGCRKEKKLIVNIVYPLS
Sbjct: 61  LVRVSAQLSYLNRVYLEMLLMQYRSPFDIKCIVYRGGDRTLVGCRKEKKLIVNIVYPLS 119

The following BLAST results are available for this feature:
BLAST of Csor.00g117810 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g117810 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6585879.11.21e-83100.00hypothetical protein SDJN03_18612, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g117810 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g117810 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g117810.m01Csor.00g117810.m01mRNA