Csor.00g113280 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g113280
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionRSN1_7TM domain-containing protein
LocationCsor_Chr07: 1796685 .. 1797222 (+)
RNA-Seq ExpressionCsor.00g113280
SyntenyCsor.00g113280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAATATGCATCACATAGCAGCTAAAAGCAATCTCGTTGATTCAAGTCCTGAAACTGATCATAATGCCCCGCCTCTTTGCCCTAAGCCCCGCCGCCTCCGTCCCGCCATCCCTAGTTTCCTCGCCCCGTTTCGATGCGCCCATCGTATTCATAGGTCATTCTTGATAAAATTTTATGTTCTAACTTTATATGTTGATATTCTTCAAGCGTATGTATGGCTTAATTTGCTCTTGTATTTCACCAGCCAATCTAGTAGTGATCCGAGAAGTGCAATCCTCAATATCATTGCGGGAAAGGTAAGGAAGTCGATTTCTCGATTCCCTGATTTCCCCGATTCCCTAATTTGTGAATGAGTTATGAAAAGACTACGAATGTTTGTGTTTGTAGGGTGTTGAAGGGAGAGATTGTTTGTGCTTGAATTGCTACCCGTCGTGTTATTCGGGATCTCCGCCAGGAAGAACAGGGAATCCGCTGGTTCAAGACGTGTATTTTCTTCATCAAGTGGAGATTCAATCGCCATTTTCGAGAACCTAA

mRNA sequence

ATGAAGAATATGCATCACATAGCAGCTAAAAGCAATCTCGTTGATTCAAGTCCTGAAACTGATCATAATGCCCCGCCTCTTTGCCCTAAGCCCCGCCGCCTCCGTCCCGCCATCCCTAGTTTCCTCGCCCCGTTTCGATGCGCCCATCGTATTCATAGCCAATCTAGTAGTGATCCGAGAAGTGCAATCCTCAATATCATTGCGGGAAAGGGTGTTGAAGGGAGAGATTGTTTGTGCTTGAATTGCTACCCGTCGTGTTATTCGGGATCTCCGCCAGGAAGAACAGGGAATCCGCTGGTTCAAGACGTGTATTTTCTTCATCAAGTGGAGATTCAATCGCCATTTTCGAGAACCTAA

Coding sequence (CDS)

ATGAAGAATATGCATCACATAGCAGCTAAAAGCAATCTCGTTGATTCAAGTCCTGAAACTGATCATAATGCCCCGCCTCTTTGCCCTAAGCCCCGCCGCCTCCGTCCCGCCATCCCTAGTTTCCTCGCCCCGTTTCGATGCGCCCATCGTATTCATAGCCAATCTAGTAGTGATCCGAGAAGTGCAATCCTCAATATCATTGCGGGAAAGGGTGTTGAAGGGAGAGATTGTTTGTGCTTGAATTGCTACCCGTCGTGTTATTCGGGATCTCCGCCAGGAAGAACAGGGAATCCGCTGGTTCAAGACGTGTATTTTCTTCATCAAGTGGAGATTCAATCGCCATTTTCGAGAACCTAA

Protein sequence

MKNMHHIAAKSNLVDSSPETDHNAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSSDPRSAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT
Homology
BLAST of Csor.00g113280 vs. NCBI nr
Match: KAG6594753.1 (hypothetical protein SDJN03_11306, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 251 bits (640), Expect = 3.93e-84
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0

Query: 1   MKNMHHIAAKSNLVDSSPETDHNAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSSDPR 60
           MKNMHHIAAKSNLVDSSPETDHNAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSSDPR
Sbjct: 1   MKNMHHIAAKSNLVDSSPETDHNAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSSDPR 60

Query: 61  SAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT 118
           SAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT
Sbjct: 61  SAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT 118

BLAST of Csor.00g113280 vs. NCBI nr
Match: KAG7026720.1 (hypothetical protein SDJN02_10724, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 250 bits (638), Expect = 7.93e-84
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0

Query: 1   MKNMHHIAAKSNLVDSSPETDHNAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSSDPR 60
           MKNMHHIAAKSNLVDSSPETDHNAPPLCPKPRR+RPAIPSFLAPFRCAHRIHSQSSSDPR
Sbjct: 1   MKNMHHIAAKSNLVDSSPETDHNAPPLCPKPRRIRPAIPSFLAPFRCAHRIHSQSSSDPR 60

Query: 61  SAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT 118
           SAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT
Sbjct: 61  SAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT 118

BLAST of Csor.00g113280 vs. NCBI nr
Match: XP_023518149.1 (uncharacterized protein LOC111781694 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 246 bits (629), Expect = 1.87e-82
Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 0

Query: 1   MKNMHHIAAKSNLVDSSPETDHNAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSSDPR 60
           MK MHHI AKSNLVDSSPETDHNAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSSDPR
Sbjct: 1   MKKMHHIPAKSNLVDSSPETDHNAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSSDPR 60

Query: 61  SAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT 118
           SAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT
Sbjct: 61  SAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT 118

BLAST of Csor.00g113280 vs. NCBI nr
Match: XP_038881848.1 (uncharacterized protein LOC120073212 [Benincasa hispida])

HSP 1 Score: 189 bits (480), Expect = 7.80e-59
Identity = 92/123 (74.80%), Postives = 98/123 (79.67%), Query Frame = 0

Query: 2   KNMHHIAAKSNLVDSSPETD------HNAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQS 61
           K M+HIA KSNLVDS  +TD      +N+ PLCPKPRRL P IPSFLAP  CAH +HSQS
Sbjct: 46  KEMYHIATKSNLVDSGLQTDQLGFKDNNSLPLCPKPRRLEPVIPSFLAPLGCAHHVHSQS 105

Query: 62  SSDPRSAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPF 118
           S D RS ILNIIAGK VEGRDCLC  CYPSCYSGSPPGRT NPLV DVYFLHQ+EI SPF
Sbjct: 106 SGDTRSGILNIIAGKHVEGRDCLCSGCYPSCYSGSPPGRTENPLVHDVYFLHQMEIHSPF 165

BLAST of Csor.00g113280 vs. NCBI nr
Match: XP_022133306.1 (uncharacterized protein LOC111005918 [Momordica charantia])

HSP 1 Score: 183 bits (464), Expect = 4.43e-57
Identity = 88/115 (76.52%), Postives = 95/115 (82.61%), Query Frame = 0

Query: 6   HIAAKSNLVDSSPETDHNAP--PLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSSDPRSAI 65
           HIA KSNLVDSSPET++N    PLCPKPRR RP IP+FL P RCA RIHSQSS + R+ I
Sbjct: 5   HIATKSNLVDSSPETNNNVNCLPLCPKPRRPRPTIPNFLVPLRCADRIHSQSSGEGRNGI 64

Query: 66  LNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT 118
           LNIIAGK VEGRDCLC NCYPSCYSGSPP RT NPLV DVYFLHQ+E+ SPFS T
Sbjct: 65  LNIIAGKNVEGRDCLCSNCYPSCYSGSPPRRTENPLVHDVYFLHQMELLSPFSHT 119

BLAST of Csor.00g113280 vs. ExPASy TrEMBL
Match: A0A6J1BUP6 (uncharacterized protein LOC111005918 OS=Momordica charantia OX=3673 GN=LOC111005918 PE=4 SV=1)

HSP 1 Score: 183 bits (464), Expect = 2.14e-57
Identity = 88/115 (76.52%), Postives = 95/115 (82.61%), Query Frame = 0

Query: 6   HIAAKSNLVDSSPETDHNAP--PLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSSDPRSAI 65
           HIA KSNLVDSSPET++N    PLCPKPRR RP IP+FL P RCA RIHSQSS + R+ I
Sbjct: 5   HIATKSNLVDSSPETNNNVNCLPLCPKPRRPRPTIPNFLVPLRCADRIHSQSSGEGRNGI 64

Query: 66  LNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT 118
           LNIIAGK VEGRDCLC NCYPSCYSGSPP RT NPLV DVYFLHQ+E+ SPFS T
Sbjct: 65  LNIIAGKNVEGRDCLCSNCYPSCYSGSPPRRTENPLVHDVYFLHQMELLSPFSHT 119

BLAST of Csor.00g113280 vs. ExPASy TrEMBL
Match: A0A0A0KHD1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507270 PE=4 SV=1)

HSP 1 Score: 183 bits (464), Expect = 2.28e-57
Identity = 91/121 (75.21%), Postives = 94/121 (77.69%), Query Frame = 0

Query: 4   MHHIAAKSNLVDSSPET------DHNAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSS 63
           MHH A KSNLVDS  ET      D+N  PLCPKPRRL PAIPSFLAP  CAH IHSQSS 
Sbjct: 1   MHHRATKSNLVDSDLETNQHGFKDNNGLPLCPKPRRLEPAIPSFLAPLICAHHIHSQSSG 60

Query: 64  DPRSAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSR 118
           D RS ILNII GK VEGRDCL   CYPSCYSGSPPGRT NPLV D+YFLHQ+EI SPFSR
Sbjct: 61  DSRSEILNIIEGKNVEGRDCLSSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEIHSPFSR 120

BLAST of Csor.00g113280 vs. ExPASy TrEMBL
Match: A0A5D3CKV6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00940 PE=4 SV=1)

HSP 1 Score: 180 bits (457), Expect = 2.66e-56
Identity = 88/121 (72.73%), Postives = 93/121 (76.86%), Query Frame = 0

Query: 4   MHHIAAKSNLVDSSPET------DHNAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSS 63
           MHHIA KSNLVDS  ET      D+N  PLCPKPRRL PAIPSFL P RCAH IHSQSS 
Sbjct: 1   MHHIATKSNLVDSDLETNQPGFKDNNGLPLCPKPRRLEPAIPSFLVPLRCAHHIHSQSSG 60

Query: 64  DPRSAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSR 118
           D RS +LNII GK VE RDC    CYPSCYSGSPPGRT NPLV D+YFLHQ+EI+S FSR
Sbjct: 61  DSRSEVLNIIEGKNVEARDCFSSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEIRSSFSR 120

BLAST of Csor.00g113280 vs. ExPASy TrEMBL
Match: A0A5N6QU24 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007023 PE=4 SV=1)

HSP 1 Score: 144 bits (363), Expect = 4.51e-42
Identity = 72/119 (60.50%), Postives = 84/119 (70.59%), Query Frame = 0

Query: 4   MHHIAAKSNLVDSSPETDH-----NAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSSD 63
           MHH AAK NLVDS  ET+      N  PLCPKPRRL P++P FL P RC+   HSQ + D
Sbjct: 1   MHHFAAKGNLVDSGSETNKLGSRGNEQPLCPKPRRLGPSMPEFLKPPRCSK--HSQPNPD 60

Query: 64  PRSAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSR 117
            R  ILNII+ K  +GR+ LC  C PSCYSGSPP RT NPLVQDV F+HQ+E+ SPF+R
Sbjct: 61  GRKDILNIISEKNTDGREALCNGCTPSCYSGSPPSRTNNPLVQDVQFIHQMELLSPFTR 117

BLAST of Csor.00g113280 vs. ExPASy TrEMBL
Match: A0A5B7BXZ4 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_043220 PE=4 SV=1)

HSP 1 Score: 142 bits (358), Expect = 3.03e-41
Identity = 72/122 (59.02%), Postives = 88/122 (72.13%), Query Frame = 0

Query: 4   MHHIAAKSNLVDS-SPETDH------NAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSS 63
           MHH+A KSNLVD+ SPET        N  P+CPKPRRL  AIP FL P RC+   HS  +
Sbjct: 1   MHHLAVKSNLVDTGSPETTTKLGFGGNDMPVCPKPRRLGSAIPEFLKPLRCSK--HSHPN 60

Query: 64  SDPRSAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFS 118
           +D RS++LN+IA K V+GR+ +C  C P CYSGSPPGRT NPLVQDV F+HQ+E+ SP +
Sbjct: 61  TDGRSSVLNMIAEKSVDGRESICNGCLPRCYSGSPPGRTDNPLVQDVQFIHQMELFSPLT 120

BLAST of Csor.00g113280 vs. TAIR 10
Match: AT5G16110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02555.1); Has 133 Blast hits to 133 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 1.5e-06
Identity = 41/128 (32.03%), Postives = 58/128 (45.31%), Query Frame = 0

Query: 1   MKNMHHIAAKSNLVDSSPET---DHNAPPLCPKPRRLRPAIPSFLAPFRCAHRIH-SQSS 60
           +K M+H   + N   S  E    D     +CPKPRR+     + + P     R+H SQ++
Sbjct: 64  VKKMNHCNLQQNAFMSREEMMGFDRKDLVVCPKPRRVGLLANNVIRPL----RLHMSQAA 123

Query: 61  SD-----PRSAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYF----LH 116
           +D       + +L II  K   G     L+  P  + GSPP R  NPL QD  F    L+
Sbjct: 124 ADLCDSKAGAELLEIIRRKEDNGTIGQLLSSSPPYFPGSPPSRAANPLAQDARFRDEKLN 183

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6594753.13.93e-84100.00hypothetical protein SDJN03_11306, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7026720.17.93e-8499.15hypothetical protein SDJN02_10724, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023518149.11.87e-8298.31uncharacterized protein LOC111781694 [Cucurbita pepo subsp. pepo][more]
XP_038881848.17.80e-5974.80uncharacterized protein LOC120073212 [Benincasa hispida][more]
XP_022133306.14.43e-5776.52uncharacterized protein LOC111005918 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A6J1BUP62.14e-5776.52uncharacterized protein LOC111005918 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A0A0KHD12.28e-5775.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507270 PE=4 SV=1[more]
A0A5D3CKV62.66e-5672.73Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5N6QU244.51e-4260.50Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007023 PE=4 SV=1[more]
A0A5B7BXZ43.03e-4159.02Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_043220 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G16110.11.5e-0632.03unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availablePANTHERPTHR33384:SF17BNAC07G32200D PROTEINcoord: 4..118
NoneNo IPR availablePANTHERPTHR33384EXPRESSED PROTEINcoord: 4..118

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g113280.m01Csor.00g113280.m01mRNA