Csor.00g113280 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGAATATGCATCACATAGCAGCTAAAAGCAATCTCGTTGATTCAAGTCCTGAAACTGATCATAATGCCCCGCCTCTTTGCCCTAAGCCCCGCCGCCTCCGTCCCGCCATCCCTAGTTTCCTCGCCCCGTTTCGATGCGCCCATCGTATTCATAGGTCATTCTTGATAAAATTTTATGTTCTAACTTTATATGTTGATATTCTTCAAGCGTATGTATGGCTTAATTTGCTCTTGTATTTCACCAGCCAATCTAGTAGTGATCCGAGAAGTGCAATCCTCAATATCATTGCGGGAAAGGTAAGGAAGTCGATTTCTCGATTCCCTGATTTCCCCGATTCCCTAATTTGTGAATGAGTTATGAAAAGACTACGAATGTTTGTGTTTGTAGGGTGTTGAAGGGAGAGATTGTTTGTGCTTGAATTGCTACCCGTCGTGTTATTCGGGATCTCCGCCAGGAAGAACAGGGAATCCGCTGGTTCAAGACGTGTATTTTCTTCATCAAGTGGAGATTCAATCGCCATTTTCGAGAACCTAA ATGAAGAATATGCATCACATAGCAGCTAAAAGCAATCTCGTTGATTCAAGTCCTGAAACTGATCATAATGCCCCGCCTCTTTGCCCTAAGCCCCGCCGCCTCCGTCCCGCCATCCCTAGTTTCCTCGCCCCGTTTCGATGCGCCCATCGTATTCATAGCCAATCTAGTAGTGATCCGAGAAGTGCAATCCTCAATATCATTGCGGGAAAGGGTGTTGAAGGGAGAGATTGTTTGTGCTTGAATTGCTACCCGTCGTGTTATTCGGGATCTCCGCCAGGAAGAACAGGGAATCCGCTGGTTCAAGACGTGTATTTTCTTCATCAAGTGGAGATTCAATCGCCATTTTCGAGAACCTAA ATGAAGAATATGCATCACATAGCAGCTAAAAGCAATCTCGTTGATTCAAGTCCTGAAACTGATCATAATGCCCCGCCTCTTTGCCCTAAGCCCCGCCGCCTCCGTCCCGCCATCCCTAGTTTCCTCGCCCCGTTTCGATGCGCCCATCGTATTCATAGCCAATCTAGTAGTGATCCGAGAAGTGCAATCCTCAATATCATTGCGGGAAAGGGTGTTGAAGGGAGAGATTGTTTGTGCTTGAATTGCTACCCGTCGTGTTATTCGGGATCTCCGCCAGGAAGAACAGGGAATCCGCTGGTTCAAGACGTGTATTTTCTTCATCAAGTGGAGATTCAATCGCCATTTTCGAGAACCTAA MKNMHHIAAKSNLVDSSPETDHNAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSSDPRSAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT Homology
BLAST of Csor.00g113280 vs. NCBI nr
Match: KAG6594753.1 (hypothetical protein SDJN03_11306, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 251 bits (640), Expect = 3.93e-84 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0
BLAST of Csor.00g113280 vs. NCBI nr
Match: KAG7026720.1 (hypothetical protein SDJN02_10724, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 250 bits (638), Expect = 7.93e-84 Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0
BLAST of Csor.00g113280 vs. NCBI nr
Match: XP_023518149.1 (uncharacterized protein LOC111781694 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 246 bits (629), Expect = 1.87e-82 Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 0
BLAST of Csor.00g113280 vs. NCBI nr
Match: XP_038881848.1 (uncharacterized protein LOC120073212 [Benincasa hispida]) HSP 1 Score: 189 bits (480), Expect = 7.80e-59 Identity = 92/123 (74.80%), Postives = 98/123 (79.67%), Query Frame = 0
BLAST of Csor.00g113280 vs. NCBI nr
Match: XP_022133306.1 (uncharacterized protein LOC111005918 [Momordica charantia]) HSP 1 Score: 183 bits (464), Expect = 4.43e-57 Identity = 88/115 (76.52%), Postives = 95/115 (82.61%), Query Frame = 0
BLAST of Csor.00g113280 vs. ExPASy TrEMBL
Match: A0A6J1BUP6 (uncharacterized protein LOC111005918 OS=Momordica charantia OX=3673 GN=LOC111005918 PE=4 SV=1) HSP 1 Score: 183 bits (464), Expect = 2.14e-57 Identity = 88/115 (76.52%), Postives = 95/115 (82.61%), Query Frame = 0
BLAST of Csor.00g113280 vs. ExPASy TrEMBL
Match: A0A0A0KHD1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507270 PE=4 SV=1) HSP 1 Score: 183 bits (464), Expect = 2.28e-57 Identity = 91/121 (75.21%), Postives = 94/121 (77.69%), Query Frame = 0
BLAST of Csor.00g113280 vs. ExPASy TrEMBL
Match: A0A5D3CKV6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00940 PE=4 SV=1) HSP 1 Score: 180 bits (457), Expect = 2.66e-56 Identity = 88/121 (72.73%), Postives = 93/121 (76.86%), Query Frame = 0
BLAST of Csor.00g113280 vs. ExPASy TrEMBL
Match: A0A5N6QU24 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007023 PE=4 SV=1) HSP 1 Score: 144 bits (363), Expect = 4.51e-42 Identity = 72/119 (60.50%), Postives = 84/119 (70.59%), Query Frame = 0
BLAST of Csor.00g113280 vs. ExPASy TrEMBL
Match: A0A5B7BXZ4 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_043220 PE=4 SV=1) HSP 1 Score: 142 bits (358), Expect = 3.03e-41 Identity = 72/122 (59.02%), Postives = 88/122 (72.13%), Query Frame = 0
BLAST of Csor.00g113280 vs. TAIR 10
Match: AT5G16110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02555.1); Has 133 Blast hits to 133 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 50.1 bits (118), Expect = 1.5e-06 Identity = 41/128 (32.03%), Postives = 58/128 (45.31%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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