Csor.00g107610 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g107610
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein SRC1-like
Location	Csor_Chr06: 6578470 .. 6578772 (+)
RNA-Seq Expression	Csor.00g107610
Synteny	Csor.00g107610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGGATCATGGAGAAAATAGGCGAGAAGCTCCACATCGGAGGAGACCACAAGGGGGAGCACAAGGGCGAGCACCACGAGAAGGACAAGCACGAGCACGAGCACGAGAAGAAGCACGGCGAGAAGTCAGAGCACCATGGGGAAGGGCACAAGGAAGGCCTGATGGAGAAGATCAAGGACAAGATCCATGGGGATCATCACGATGATAAGGGTGAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGGGCGAGCACCACGAGGGCGGCCACAGCAGCAGCAGCGACAGCGACAGCGACTGA

mRNA sequence

ATGGCAGGGATCATGGAGAAAATAGGCGAGAAGCTCCACATCGGAGGAGACCACAAGGGGGAGCACAAGGGCGAGCACCACGAGAAGGACAAGCACGAGCACGAGCACGAGAAGAAGCACGGCGAGAAGTCAGAGCACCATGGGGAAGGGCACAAGGAAGGCCTGATGGAGAAGATCAAGGACAAGATCCATGGGGATCATCACGATGATAAGGGTGAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGGGCGAGCACCACGAGGGCGGCCACAGCAGCAGCAGCGACAGCGACAGCGACTGA

Coding sequence (CDS)

ATGGCAGGGATCATGGAGAAAATAGGCGAGAAGCTCCACATCGGAGGAGACCACAAGGGGGAGCACAAGGGCGAGCACCACGAGAAGGACAAGCACGAGCACGAGCACGAGAAGAAGCACGGCGAGAAGTCAGAGCACCATGGGGAAGGGCACAAGGAAGGCCTGATGGAGAAGATCAAGGACAAGATCCATGGGGATCATCACGATGATAAGGGTGAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGGGCGAGCACCACGAGGGCGGCCACAGCAGCAGCAGCGACAGCGACAGCGACTGA

Protein sequence

MAGIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHEHEKKHGEKSEHHGEGHKEGLMEKIKDKIHGDHHDDKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD

Homology

[Close]

BLAST of Csor.00g107610 vs. ExPASy Swiss-Prot
Match: O04132 (Protein SRC1 OS=Glycine max OX=3847 GN=SRC1 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.2e-16
Identity = 65/103 (63.11%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 1   MAGIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHEHEKKHGEKSEHHGE----GHKEGLM 60
           M+GI+ KI E LH+GG  K EHKGEHH + K EH+ E     K EH GE     HKEGL+
Sbjct: 1   MSGIIHKIEETLHVGGHKKEEHKGEHHGEHKGEHKGEHHGEHKGEHKGEQHHGEHKEGLV 60

Query: 61  EKIKDKIHGDHHDDKGEKKKKKEKKKKGEHHE-GGHSSSSDSD 99
           +KIKDKIHGD H DKGEKKKKK+KKKK   H+  GHSSSSDSD
Sbjct: 61  DKIKDKIHGDGH-DKGEKKKKKDKKKKEHGHDHHGHSSSSDSD 102

[Close]

BLAST of Csor.00g107610 vs. ExPASy Swiss-Prot
Match: Q9SLJ2 (Dehydrin HIRD11 OS=Arabidopsis thaliana OX=3702 GN=HIRD11 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-11
Identity = 57/108 (52.78%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 1   MAGIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHEHEKKHGEKSEHHGEGHKEGLMEKIK 60
           MAG++ KIG+ LHIGG   G  +GEH ++++H     KKH +  EH    HKEG+++KIK
Sbjct: 1   MAGLINKIGDALHIGG---GNKEGEHKKEEEH-----KKHVD--EHKSGEHKEGIVDKIK 60

Query: 61  DKIHGDH---HDDK-----GEKKKKKEKKKKGEHHEGGHSSSSDSDSD 101
           DKIHG     HD +     GEKKKKK+KK+K  H +G HSSSSDSDSD
Sbjct: 61  DKIHGGEGKSHDGEGKSHDGEKKKKKDKKEKKHHDDGHHSSSSDSDSD 98

[Close]

BLAST of Csor.00g107610 vs. NCBI nr
Match: KAG6596975.1 (Protein SRC1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 186 bits (472), Expect = 4.47e-59
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MAGIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHEHEKKHGEKSEHHGEGHKEGLMEKIK 60
           MAGIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHEHEKKHGEKSEHHGEGHKEGLMEKIK
Sbjct: 1   MAGIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHEHEKKHGEKSEHHGEGHKEGLMEKIK 60

Query: 61  DKIHGDHHDDKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD 100
           DKIHGDHHDDKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD
Sbjct: 61  DKIHGDHHDDKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD 100

[Close]

BLAST of Csor.00g107610 vs. NCBI nr
Match: XP_022942109.1 (protein SRC1-like [Cucurbita moschata])

HSP 1 Score: 176 bits (447), Expect = 2.73e-55
Identity = 97/100 (97.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MAGIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHEHEKKHGEKSEHHGEGHKEGLMEKIK 60
           MAGIMEKIGEKLHIGGDHKGEHKGEHHEKDK  HEHEKKHGEKSEHHGEGHKEGLMEKIK
Sbjct: 1   MAGIMEKIGEKLHIGGDHKGEHKGEHHEKDK--HEHEKKHGEKSEHHGEGHKEGLMEKIK 60

Query: 61  DKIHGDHHDDKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD 100
           DKIHGDHHD+KGEKKKKKEKKKKGEHHEGGHSSSSDSDSD
Sbjct: 61  DKIHGDHHDEKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD 98

[Close]

BLAST of Csor.00g107610 vs. NCBI nr
Match: XP_023538905.1 (protein SRC1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172 bits (437), Expect = 1.18e-53
Identity = 98/106 (92.45%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 1   MAGIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHE-----HEKKHGEKSEHHGEGHKEGL 60
           M+GIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHE     HEKKHGEKSEHHGEGHKEGL
Sbjct: 1   MSGIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHEKDKHEHEKKHGEKSEHHGEGHKEGL 60

Query: 61  MEKIKDKIHG-DHHDDKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD 100
           MEKIKDKIHG DHHD+KGEKKKKKEKKKKGEHHEGGHSSSSDSDSD
Sbjct: 61  MEKIKDKIHGGDHHDEKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD 106

[Close]

BLAST of Csor.00g107610 vs. NCBI nr
Match: KAG7028450.1 (Protein SRC1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166 bits (421), Expect = 2.53e-51
Identity = 95/102 (93.14%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 1   MAGIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHEHE--KKHGEKSEHHGEGHKEGLMEK 60
           MAGIMEKIGEKLHIGGDHKGEH    HEKDKHEHEHE  KKHGEKSEHHGEGHKEGLMEK
Sbjct: 1   MAGIMEKIGEKLHIGGDHKGEH----HEKDKHEHEHEHEKKHGEKSEHHGEGHKEGLMEK 60

Query: 61  IKDKIHGDHHDDKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD 100
           IKDKIHGDHHD+KGEKKKKKEKKKKGEHHEGGHSSSSDSDSD
Sbjct: 61  IKDKIHGDHHDEKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD 98

[Close]

BLAST of Csor.00g107610 vs. NCBI nr
Match: XP_022974702.1 (protein SRC1-like [Cucurbita maxima])

HSP 1 Score: 162 bits (411), Expect = 9.29e-50
Identity = 95/103 (92.23%), Postives = 97/103 (94.17%), Query Frame = 0


Query: 1   MAGIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHEHEKKHGEKSEHHGEGHKEGLMEKIK 60
           M+GIMEKIGEKLHIGGDHKGEHKGEHHEKDK  HEHEKKHGEKSEHHGEGHKEGLMEKIK
Sbjct: 1   MSGIMEKIGEKLHIGGDHKGEHKGEHHEKDK--HEHEKKHGEKSEHHGEGHKEGLMEKIK 60

Query: 61  DKIHG--DHHDDKGEKKKKK-EKKKKGEHHEGGHSSSSDSDSD 100
           DKIHG  DHHD+KGEKKKKK EKKKKGEH EGGHSSSSDSDSD
Sbjct: 61  DKIHGGGDHHDEKGEKKKKKKEKKKKGEHQEGGHSSSSDSDSD 101

[Close]

BLAST of Csor.00g107610 vs. ExPASy TrEMBL
Match: A0A6J1FQD3 (protein SRC1-like OS=Cucurbita moschata OX=3662 GN=LOC111447278 PE=4 SV=1)

HSP 1 Score: 176 bits (447), Expect = 1.32e-55
Identity = 97/100 (97.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MAGIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHEHEKKHGEKSEHHGEGHKEGLMEKIK 60
           MAGIMEKIGEKLHIGGDHKGEHKGEHHEKDK  HEHEKKHGEKSEHHGEGHKEGLMEKIK
Sbjct: 1   MAGIMEKIGEKLHIGGDHKGEHKGEHHEKDK--HEHEKKHGEKSEHHGEGHKEGLMEKIK 60

Query: 61  DKIHGDHHDDKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD 100
           DKIHGDHHD+KGEKKKKKEKKKKGEHHEGGHSSSSDSDSD
Sbjct: 61  DKIHGDHHDEKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD 98

[Close]

BLAST of Csor.00g107610 vs. ExPASy TrEMBL
Match: A0A6J1IAZ2 (protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111473441 PE=4 SV=1)

HSP 1 Score: 162 bits (411), Expect = 4.50e-50
Identity = 95/103 (92.23%), Postives = 97/103 (94.17%), Query Frame = 0


Query: 1   MAGIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHEHEKKHGEKSEHHGEGHKEGLMEKIK 60
           M+GIMEKIGEKLHIGGDHKGEHKGEHHEKDK  HEHEKKHGEKSEHHGEGHKEGLMEKIK
Sbjct: 1   MSGIMEKIGEKLHIGGDHKGEHKGEHHEKDK--HEHEKKHGEKSEHHGEGHKEGLMEKIK 60

Query: 61  DKIHG--DHHDDKGEKKKKK-EKKKKGEHHEGGHSSSSDSDSD 100
           DKIHG  DHHD+KGEKKKKK EKKKKGEH EGGHSSSSDSDSD
Sbjct: 61  DKIHGGGDHHDEKGEKKKKKKEKKKKGEHQEGGHSSSSDSDSD 101

[Close]

BLAST of Csor.00g107610 vs. ExPASy TrEMBL
Match: A0A6J1I7B7 (protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471920 PE=4 SV=1)

HSP 1 Score: 161 bits (408), Expect = 1.29e-49
Identity = 94/103 (91.26%), Postives = 97/103 (94.17%), Query Frame = 0


Query: 1   MAGIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHEHEKKHGEKSEHHGEGHKEGLMEKIK 60
           M+GIMEKIGEKLHIGGDHKGEHKG+HHEKDK  HEHEKKHGEKSEHHGEGHKEGLMEKIK
Sbjct: 1   MSGIMEKIGEKLHIGGDHKGEHKGDHHEKDK--HEHEKKHGEKSEHHGEGHKEGLMEKIK 60

Query: 61  DKIHG--DHHDDKGEKKKKK-EKKKKGEHHEGGHSSSSDSDSD 100
           DKIHG  DHHD+KGEKKKKK EKKKKGEH EGGHSSSSDSDSD
Sbjct: 61  DKIHGGGDHHDEKGEKKKKKKEKKKKGEHQEGGHSSSSDSDSD 101

[Close]

BLAST of Csor.00g107610 vs. ExPASy TrEMBL
Match: A0A5A7UF86 (Zinc transporter ZIP6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007000 PE=4 SV=1)

HSP 1 Score: 112 bits (281), Expect = 2.81e-30
Identity = 76/109 (69.72%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 1   MAGIMEKIGEKLHIGGDHKGEH----KGEHHEKDKHEHEHEKKHGEKSEHHGEGHKEGLM 60
           M+G +EKIGEKLHIGGDHKGEH    KGEHH++ K       KH +K EHHGEGHKEG++
Sbjct: 1   MSGFIEKIGEKLHIGGDHKGEHHDAHKGEHHDEHK-------KHEKKEEHHGEGHKEGII 60

Query: 61  EKIKDKIHGD--HHDDKGEKKKKKEKKKKGEH---HEGGHSSSSDSDSD 100
           EKIKDKIHG   HHD+KGEKKKK EKKKKGEH   H GG  SSSDSDSD
Sbjct: 61  EKIKDKIHGGDGHHDEKGEKKKK-EKKKKGEHGHEHHGG-DSSSDSDSD 100

[Close]

BLAST of Csor.00g107610 vs. ExPASy TrEMBL
Match: A0A1S3B8E4 (protein SRC1 OS=Cucumis melo OX=3656 GN=LOC103486916 PE=4 SV=1)

HSP 1 Score: 112 bits (281), Expect = 2.81e-30
Identity = 76/109 (69.72%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 1   MAGIMEKIGEKLHIGGDHKGEH----KGEHHEKDKHEHEHEKKHGEKSEHHGEGHKEGLM 60
           M+G +EKIGEKLHIGGDHKGEH    KGEHH++ K       KH +K EHHGEGHKEG++
Sbjct: 1   MSGFIEKIGEKLHIGGDHKGEHHDAHKGEHHDEHK-------KHEKKEEHHGEGHKEGII 60

Query: 61  EKIKDKIHGD--HHDDKGEKKKKKEKKKKGEH---HEGGHSSSSDSDSD 100
           EKIKDKIHG   HHD+KGEKKKK EKKKKGEH   H GG  SSSDSDSD
Sbjct: 61  EKIKDKIHGGDGHHDEKGEKKKK-EKKKKGEHGHEHHGG-DSSSDSDSD 100

[Close]

BLAST of Csor.00g107610 vs. TAIR 10
Match: AT1G54410.1 (dehydrin family protein )

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-12
Identity = 57/108 (52.78%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 1   MAGIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHEHEKKHGEKSEHHGEGHKEGLMEKIK 60
           MAG++ KIG+ LHIGG   G  +GEH ++++H     KKH +  EH    HKEG+++KIK
Sbjct: 1   MAGLINKIGDALHIGG---GNKEGEHKKEEEH-----KKHVD--EHKSGEHKEGIVDKIK 60

Query: 61  DKIHGDH---HDDK-----GEKKKKKEKKKKGEHHEGGHSSSSDSDSD 101
           DKIHG     HD +     GEKKKKK+KK+K  H +G HSSSSDSDSD
Sbjct: 61  DKIHGGEGKSHDGEGKSHDGEKKKKKDKKEKKHHDDGHHSSSSDSDSD 98

The following BLAST results are available for this feature:

BLAST of Csor.00g107610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04132	2.2e-16	63.11	Protein SRC1 OS=Glycine max OX=3847 GN=SRC1 PE=2 SV=1	[more]
Q9SLJ2	2.1e-11	52.78	Dehydrin HIRD11 OS=Arabidopsis thaliana OX=3702 GN=HIRD11 PE=1 SV=1	[more]

BLAST of Csor.00g107610 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596975.1	4.47e-59	100.00	Protein SRC1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022942109.1	2.73e-55	97.00	protein SRC1-like [Cucurbita moschata]	[more]
XP_023538905.1	1.18e-53	92.45	protein SRC1-like [Cucurbita pepo subsp. pepo]	[more]
KAG7028450.1	2.53e-51	93.14	Protein SRC1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022974702.1	9.29e-50	92.23	protein SRC1-like [Cucurbita maxima]	[more]

BLAST of Csor.00g107610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FQD3	1.32e-55	97.00	protein SRC1-like OS=Cucurbita moschata OX=3662 GN=LOC111447278 PE=4 SV=1	[more]
A0A6J1IAZ2	4.50e-50	92.23	protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111473441 PE=4 SV=1	[more]
A0A6J1I7B7	1.29e-49	91.26	protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471920 PE=4 SV=1	[more]
A0A5A7UF86	2.81e-30	69.72	Zinc transporter ZIP6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35...	[more]
A0A1S3B8E4	2.81e-30	69.72	protein SRC1 OS=Cucumis melo OX=3656 GN=LOC103486916 PE=4 SV=1	[more]

BLAST of Csor.00g107610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54410.1	1.5e-12	52.78	dehydrin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..73
None	No IPR available	PANTHER	PTHR34941:SF3	COLD-ACCLIMATION SPECIFIC PROTEIN 15	coord: 1..38
None	No IPR available	PANTHER	PTHR34941:SF3	COLD-ACCLIMATION SPECIFIC PROTEIN 15	coord: 31..99
IPR039285	Dehydrin HIRD11-like	PANTHER	PTHR34941	DEHYDRIN HIRD11	coord: 1..38
IPR039285	Dehydrin HIRD11-like	PANTHER	PTHR34941	DEHYDRIN HIRD11	coord: 31..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g107610.m01	Csor.00g107610.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding