Csor.00g100080 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g100080
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr20: 3153592 .. 3155480 (-)
RNA-Seq Expression	Csor.00g100080
Synteny	Csor.00g100080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTTTCGAAGAGATCGGGCCGTTCTGCTTGAATACGGAAAACCCAATAAGGTAATACACAAAGCCCAATAAGAGAGTGGGCCGTTCTGTTTGAATACGGAAAGCCCAATAAATGCGAGGGCGATCCTGGTTGAACATGGAAAGCCCAATAAGAGATAGGGCCGTCCTGCTTGATAATGGAAAGCCCAATGCAGCTTTTAATTTATATACTTTTAAATATTAATTTATTTTTCATGAAACTTAAAATAATCACTATTATTAAATTCTTGTTGATTTTTTTACACAAAAAAAGAAAAAAAAATTGTCTCACGCTTCATAAATTTAATAAATATATTCCCATATAGATTTTAAAATCCACATTTAATCGTTACGATAAGATAATTACATTGTGACAGTTTCATTCAAATAATGTTGAATTTTTAACTTTTTACGATGAAATTGCTCCCATGATCTTATTAAAAGCACTAGCCTACCATCCACGTTTAAATTCTATTATTCATTCATTCATCGGTGGAAATTTCCAAAAAAAAAAAAAAAAAAAACCCTACTTTATTCCCACTGTCATTATCAGTTCCAGCTTCCATGAATATAAAGAGGGGAAAAAATTCATGAAAATATTAAAATAATAATTTGATGTGTACTTTAGGAATTATTTATTTATATTCAGAAATCGTGTATTTGAAGCAAAAGTCGAGTCCTTGGTACCTCCAAAAGGAGCTTCCATTAAAGCTGCTTTTTTCATATATATATATATATATATATATATATATATATATATATATTTATATGTCGCACAAACATTGGGAGATATTAAAGCACCTCATCATCCATCTTTAATCACTTTAAACTATACTTAATTACACGCTAATTTGATTATGGGTCTCTCAAATTATGCATTATATTTTAATCATAGTATAAATGCTTACACACCGCTAACCGATATTGTATTCTTTCGACATTCTCTCTCAAAATGCGTCTCGAAGAACAAGTTTACACATCTTACGTGAAAGATTCTTCCTCATCCGCTATTGAAAAATAGTTTCTTTTTGTAGTAAAAACTAAAAATATGGGTTTATGTAGAGGAAAAGGAATCAAAAGAAAACAAAGAAGGTAAAGGTAAGGCATGGAGATAGGTACTAGGAAAGCCATTGATACGTTCTTGTACTTGTTCTATTGAGAAACAGAGAGAAGACAGAGAGTTACTGATATTCTTTGGGAAAAGAGCAACCTTTTTTTTTTTTTTTTTTTTTAATTTAATTTATGGGATTGGGATCAGGGTCGTCTGAAAACAATACAAGAACAGATTGGAAACAGACGCTGAATCAAATTTAACTAAGAAAAAGAAAAACCCAAGTGATTATTTTCACCTAAAACCCAAATAAAAGCTAAAGTTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATTTTTTGTTGTTGTTGTGAGTGTTGTTCTGTTTCTACATCAACATGGCGTAACGCATGCCGTCGCTTACCATAAGGTGGTTGGTCTCGGAAATGGTGGAGGCAAAATAGTGATCGGTGGAGAGCCAGAAGGTGTCGGCGGAGGAGTGAACGGTTGGTGGAGCGAAGCAAGAGAGAATAGAGAAAGGGGCACGAATGATGCTGAAGACGGCGGCGATGGTGCGGTGAGCAGCAGGGCGGCGATGGTGGTGGTGATTGGCGACGGCGTAGATGGGGAATTCAGTTGTAGTGAACATGCTCTCGTCGGCGACGCGGTGGCTGTTAGTGAAGTTGTGGAGGGTAGGGCGAAGAGCTGCGATGAGGCGCCACATGACGACGACGACGACGACGATGATGATGAGGGAAATTGGAGGATTAAATTAATGGGGTTTTGGCGTGGCACCAACTTAATTTGA

mRNA sequence

ATGGGCTTTCGAAGAGATCGGGCCGTTCTGCTTGAATACGGAAAACCCAATAAGGTGGTTGGTCTCGGAAATGGTGGAGGCAAAATAGTGATCGGTGGAGAGCCAGAAGGTGTCGGCGGAGGAGTGAACGGTTGGTGGAGCGAAGCAAGAGAGAATAGAGAAAGGGGCACGAATGATGCTGAAGACGGCGGCGATGGTGCGGTGAGCAGCAGGGCGGCGATGGTGGTGGTGATTGGCGACGGCGTAGATGGGGAATTCAGTTGTAGTGAACATGCTCTCGTCGGCGACGCGGTGGCTGTTAGTGAAGTTGTGGAGGGTAGGGCGAAGAGCTGCGATGAGGCGCCACATGACGACGACGACGACGACGATGATGATGAGGGAAATTGGAGGATTAAATTAATGGGGTTTTGGCGTGGCACCAACTTAATTTGA

Coding sequence (CDS)

ATGGGCTTTCGAAGAGATCGGGCCGTTCTGCTTGAATACGGAAAACCCAATAAGGTGGTTGGTCTCGGAAATGGTGGAGGCAAAATAGTGATCGGTGGAGAGCCAGAAGGTGTCGGCGGAGGAGTGAACGGTTGGTGGAGCGAAGCAAGAGAGAATAGAGAAAGGGGCACGAATGATGCTGAAGACGGCGGCGATGGTGCGGTGAGCAGCAGGGCGGCGATGGTGGTGGTGATTGGCGACGGCGTAGATGGGGAATTCAGTTGTAGTGAACATGCTCTCGTCGGCGACGCGGTGGCTGTTAGTGAAGTTGTGGAGGGTAGGGCGAAGAGCTGCGATGAGGCGCCACATGACGACGACGACGACGACGATGATGATGAGGGAAATTGGAGGATTAAATTAATGGGGTTTTGGCGTGGCACCAACTTAATTTGA

Protein sequence

MGFRRDRAVLLEYGKPNKVVGLGNGGGKIVIGGEPEGVGGGVNGWWSEARENRERGTNDAEDGGDGAVSSRAAMVVVIGDGVDGEFSCSEHALVGDAVAVSEVVEGRAKSCDEAPHDDDDDDDDDEGNWRIKLMGFWRGTNLI

Homology

[Close]

BLAST of Csor.00g100080 vs. NCBI nr
Match: KAG6570928.1 (hypothetical protein SDJN03_29843, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 288 bits (737), Expect = 4.07e-98
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MGFRRDRAVLLEYGKPNKVVGLGNGGGKIVIGGEPEGVGGGVNGWWSEARENRERGTNDA 60
           MGFRRDRAVLLEYGKPNKVVGLGNGGGKIVIGGEPEGVGGGVNGWWSEARENRERGTNDA
Sbjct: 1   MGFRRDRAVLLEYGKPNKVVGLGNGGGKIVIGGEPEGVGGGVNGWWSEARENRERGTNDA 60

Query: 61  EDGGDGAVSSRAAMVVVIGDGVDGEFSCSEHALVGDAVAVSEVVEGRAKSCDEAPHDDDD 120
           EDGGDGAVSSRAAMVVVIGDGVDGEFSCSEHALVGDAVAVSEVVEGRAKSCDEAPHDDDD
Sbjct: 61  EDGGDGAVSSRAAMVVVIGDGVDGEFSCSEHALVGDAVAVSEVVEGRAKSCDEAPHDDDD 120

Query: 121 DDDDDEGNWRIKLMGFWRGTNLI 143
           DDDDDEGNWRIKLMGFWRGTNLI
Sbjct: 121 DDDDDEGNWRIKLMGFWRGTNLI 143

The following BLAST results are available for this feature:

BLAST of Csor.00g100080 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g100080 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570928.1	4.07e-98	100.00	hypothetical protein SDJN03_29843, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g100080 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g100080 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g100080.m01	Csor.00g100080.m01	mRNA