Csor.00g087490 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g087490
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr10: 11069432 .. 11069737 (-)
RNA-Seq ExpressionCsor.00g087490
SyntenyCsor.00g087490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCCTTAATGCTTCCACAATGAAGTTAGTACTTGTATTCGTTGTCTGCTTAGCCCTTTTTGCATCATCGACCATGACCCTCGTGACAGCAGACTCTAATGATTTTGATATCGCTGGCTGCATTCCATTTGTTGGAGAAGGGGCGATGTGTGTGGTAGAGGCTCTCAGACTTCCAACTCGTGCCATTAAGACTTGTTGCAAAGCTATTTTTAAGCTTAATGACTGCGACTCAGATATTTTCGGAAATATTCCCCAAGCTGACATGGAAGTAGTTAGGCATGTTTGTAGACTGTTAGCCGATTGA

mRNA sequence

ATGTCCCTTAATGCTTCCACAATGAAGTTAGTACTTGTATTCGTTGTCTGCTTAGCCCTTTTTGCATCATCGACCATGACCCTCGTGACAGCAGACTCTAATGATTTTGATATCGCTGGCTGCATTCCATTTGTTGGAGAAGGGGCGATGTGTGTGGTAGAGGCTCTCAGACTTCCAACTCGTGCCATTAAGACTTGTTGCAAAGCTATTTTTAAGCTTAATGACTGCGACTCAGATATTTTCGGAAATATTCCCCAAGCTGACATGGAAGTAGTTAGGCATGTTTGTAGACTGTTAGCCGATTGA

Coding sequence (CDS)

ATGTCCCTTAATGCTTCCACAATGAAGTTAGTACTTGTATTCGTTGTCTGCTTAGCCCTTTTTGCATCATCGACCATGACCCTCGTGACAGCAGACTCTAATGATTTTGATATCGCTGGCTGCATTCCATTTGTTGGAGAAGGGGCGATGTGTGTGGTAGAGGCTCTCAGACTTCCAACTCGTGCCATTAAGACTTGTTGCAAAGCTATTTTTAAGCTTAATGACTGCGACTCAGATATTTTCGGAAATATTCCCCAAGCTGACATGGAAGTAGTTAGGCATGTTTGTAGACTGTTAGCCGATTGA

Protein sequence

MSLNASTMKLVLVFVVCLALFASSTMTLVTADSNDFDIAGCIPFVGEGAMCVVEALRLPTRAIKTCCKAIFKLNDCDSDIFGNIPQADMEVVRHVCRLLAD
Homology
BLAST of Csor.00g087490 vs. NCBI nr
Match: KAG6590468.1 (hypothetical protein SDJN03_15891, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 202 bits (513), Expect = 2.67e-65
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MSLNASTMKLVLVFVVCLALFASSTMTLVTADSNDFDIAGCIPFVGEGAMCVVEALRLPT 60
           MSLNASTMKLVLVFVVCLALFASSTMTLVTADSNDFDIAGCIPFVGEGAMCVVEALRLPT
Sbjct: 1   MSLNASTMKLVLVFVVCLALFASSTMTLVTADSNDFDIAGCIPFVGEGAMCVVEALRLPT 60

Query: 61  RAIKTCCKAIFKLNDCDSDIFGNIPQADMEVVRHVCRLLAD 101
           RAIKTCCKAIFKLNDCDSDIFGNIPQADMEVVRHVCRLLAD
Sbjct: 61  RAIKTCCKAIFKLNDCDSDIFGNIPQADMEVVRHVCRLLAD 101

BLAST of Csor.00g087490 vs. NCBI nr
Match: KAG6590465.1 (hypothetical protein SDJN03_15888, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141 bits (355), Expect = 3.54e-41
Identity = 69/100 (69.00%), Postives = 85/100 (85.00%), Query Frame = 0

Query: 1   MSLNASTMKLVLVFVVCLALFASSTMTLVTADSN-DFDIAGCIPFVGEGAMCVVEALRLP 60
           MSLNASTMKL +VF+VCLA+F+ ST TLVTA+ + DF+I GCIPFV EGAMC VEAL+ P
Sbjct: 4   MSLNASTMKLAVVFLVCLAIFSPSTKTLVTANFDADFNIIGCIPFVAEGAMCAVEALKSP 63

Query: 61  TRAIKTCCKAIFKLNDCDSDIFGNIPQADMEVVRHVCRLL 99
           T AIKTCC+A+ KLNDCDS+IF +IPQ+DM++V+ VC  L
Sbjct: 64  TSAIKTCCEAVLKLNDCDSNIFKSIPQSDMDIVKQVCDAL 103

BLAST of Csor.00g087490 vs. NCBI nr
Match: KAG6590467.1 (hypothetical protein SDJN03_15890, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139 bits (351), Expect = 1.44e-40
Identity = 67/100 (67.00%), Postives = 85/100 (85.00%), Query Frame = 0

Query: 1   MSLNASTMKLVLVFVVCLALFASSTMTLVTADSN-DFDIAGCIPFVGEGAMCVVEALRLP 60
           MSLNASTMKL +VF+VCLA+F+ ST TLVTA+ + DF+I GCIPFV EGAMC VEAL+ P
Sbjct: 4   MSLNASTMKLAVVFLVCLAIFSPSTKTLVTANFDADFNIIGCIPFVAEGAMCAVEALKAP 63

Query: 61  TRAIKTCCKAIFKLNDCDSDIFGNIPQADMEVVRHVCRLL 99
           T A+KTCC+A+ KLN+CDS+IF +IPQ+DM++V+ VC  L
Sbjct: 64  TSAVKTCCEAVLKLNECDSNIFKSIPQSDMDIVKQVCDAL 103

BLAST of Csor.00g087490 vs. NCBI nr
Match: KAG6590464.1 (hypothetical protein SDJN03_15887, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 134 bits (337), Expect = 1.90e-38
Identity = 64/100 (64.00%), Postives = 82/100 (82.00%), Query Frame = 0

Query: 1   MSLNASTMKLVLVFVVCLALFASSTMTLVTADSN-DFDIAGCIPFVGEGAMCVVEALRLP 60
           M+  +STMKL +VF+VCLA+F+ ST TLVTAD + DF I GCIPF+ EGAMCVVEAL +P
Sbjct: 1   MAAMSSTMKLAVVFLVCLAIFSPSTKTLVTADFDADFSIIGCIPFIAEGAMCVVEALTVP 60

Query: 61  TRAIKTCCKAIFKLNDCDSDIFGNIPQADMEVVRHVCRLL 99
             AI TCCKA+ KL+DCDS+IF +IPQ+DM+ V+H+C +L
Sbjct: 61  LGAIGTCCKAVLKLSDCDSNIFKSIPQSDMDTVKHICNML 100

BLAST of Csor.00g087490 vs. NCBI nr
Match: KAA0050069.1 (hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK10341.1 hypothetical protein E5676_scaffold367G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.41e-20
Identity = 46/104 (44.23%), Postives = 64/104 (61.54%), Query Frame = 0

Query: 2   SLNASTMKLVLVFVVCLALFA-SSTMTLVTADS------NDFDIAGCIPFVGEGAMCVVE 61
           SLN S MKLVLVF+VC+A+ A S+TM   TA +       +F    C PF+ E  +CV +
Sbjct: 5   SLNVSAMKLVLVFLVCIAILAPSTTMADTTAAAPSPSVPQNFPFLKCAPFILEATLCVTD 64

Query: 62  ALRLPTRAIKTCCKAIFKLNDCDSDIFGNIPQADMEVVRHVCRL 98
            ++ P     +CCKAI KLNDC  +I+  IP  DM+V++ +C L
Sbjct: 65  VIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKICSL 108

BLAST of Csor.00g087490 vs. ExPASy TrEMBL
Match: A0A5A7U9A1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00160 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.82e-21
Identity = 46/104 (44.23%), Postives = 64/104 (61.54%), Query Frame = 0

Query: 2   SLNASTMKLVLVFVVCLALFA-SSTMTLVTADS------NDFDIAGCIPFVGEGAMCVVE 61
           SLN S MKLVLVF+VC+A+ A S+TM   TA +       +F    C PF+ E  +CV +
Sbjct: 5   SLNVSAMKLVLVFLVCIAILAPSTTMADTTAAAPSPSVPQNFPFLKCAPFILEATLCVTD 64

Query: 62  ALRLPTRAIKTCCKAIFKLNDCDSDIFGNIPQADMEVVRHVCRL 98
            ++ P     +CCKAI KLNDC  +I+  IP  DM+V++ +C L
Sbjct: 65  VIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKICSL 108

BLAST of Csor.00g087490 vs. ExPASy TrEMBL
Match: A0A0A0LTD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.74e-18
Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 0

Query: 2   SLNASTMKLVLVFVVCLALFASS----TMT------LVTADSNDFDIAGCIPFVGEGAMC 61
           S +AST++L +VF+VC+ + A S    TM       LV  D +D   + C PF+ E  MC
Sbjct: 6   STSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMC 65

Query: 62  VVEALRLPTRAIKTCCKAIFKLNDCDSDIFGNIPQADMEVVRHVCRL 98
           VV+ ++LP  +  +CCKAI  LNDC   I+ +IP  DM+V++ +C L
Sbjct: 66  VVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKICGL 110

BLAST of Csor.00g087490 vs. ExPASy TrEMBL
Match: A0A5D3CGK9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00080 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.47e-17
Identity = 42/98 (42.86%), Postives = 57/98 (58.16%), Query Frame = 0

Query: 8  MKLVLVFVVCLALFA-SSTMTLVTADS------NDFDIAGCIPFVGEGAMCVVEALRLPT 67
          MKLVLVF+VC+A+ A S+TM   TA +       +F    C PF+ E  +CV   ++ P 
Sbjct: 1  MKLVLVFLVCIAILAPSTTMAGTTAAAPSPSVPQNFPFLKCAPFILEATLCVTGVIKFPI 60

Query: 68 RAIKTCCKAIFKLNDCDSDIFGNIPQADMEVVRHVCRL 98
              +CCKAI KL DC  DI+  IP +DM V++  C L
Sbjct: 61 APHPSCCKAISKLKDCAPDIYQKIPSSDMNVIKKTCSL 98

BLAST of Csor.00g087490 vs. ExPASy TrEMBL
Match: A0A0A0LYQ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.08e-16
Identity = 41/104 (39.42%), Postives = 52/104 (50.00%), Query Frame = 0

Query: 2   SLNASTMKLVLVFVVCLALFASSTMTLVTA---------DSNDFDIAGCIPFVGEGAMCV 61
           SL   TMKL+LVF+ C A+FA     +  A          + D     C  FV E   C+
Sbjct: 5   SLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCM 64

Query: 62  VEALRLPTRAIKTCCKAIFKLNDCDSDIFGNIPQADMEVVRHVC 96
           ++  + P  A  TCCKAI KL  C S  F  IP ADM V++ VC
Sbjct: 65  IDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVC 108

BLAST of Csor.00g087490 vs. ExPASy TrEMBL
Match: A0A5A7U2L3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00060 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 9.65e-16
Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = 0

Query: 2   SLNASTMKLVLVFVVCLALFASS-----TMTLVTAD---SNDFDIAGCIPFVGEGAMCVV 61
           SL AS +K   VF+V +A+ A+S     T++  T D   S +     C PF+ +  +C+V
Sbjct: 5   SLKASPIKSASVFIVSIAILAASVTAGRTVSSTTLDPSMSQNLSFFSCAPFIFDVTLCLV 64

Query: 62  EALRLPTRAIKTCCKAIFKLNDCDSDIFGNIPQADMEVVRHVC 96
           +  + P      CCKAIFKLNDC   +F  IP ADM+V++ +C
Sbjct: 65  DVFKFPISPHPLCCKAIFKLNDCAPVVFQTIPPADMDVIKKIC 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6590468.12.67e-65100.00hypothetical protein SDJN03_15891, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6590465.13.54e-4169.00hypothetical protein SDJN03_15888, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6590467.11.44e-4067.00hypothetical protein SDJN03_15890, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6590464.11.90e-3864.00hypothetical protein SDJN03_15887, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0050069.11.41e-2044.23hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK1034... [more]
Match NameE-valueIdentityDescription
A0A5A7U9A16.82e-2144.23Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LTD67.74e-1841.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1[more]
A0A5D3CGK96.47e-1742.86Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LYQ32.08e-1639.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1[more]
A0A5A7U2L39.65e-1638.83Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g087490.m01Csor.00g087490.m01mRNA