Csor.00g066020 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g066020
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr13: 10413054 .. 10413278 (-)
RNA-Seq ExpressionCsor.00g066020
SyntenyCsor.00g066020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGGCTAATGAGAGAATTTGGCAGTCAAAATGGCAGCTTTGGCCTCGCCGGTGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGCATAATCTCCACCATAATTTTCTCTTGCTCCGACGGCATGTCAACAAAAGACAGGAATTCCACGGCCGACGTTGAGCTTTACGGTGCCGGTTGCGCCGCCGGCTGCGGCGCTGGATGTGGTGCTTGA

mRNA sequence

ATGGCGAGGCTAATGAGAGAATTTGGCAGTCAAAATGGCAGCTTTGGCCTCGCCGGTGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGCATAATCTCCACCATAATTTTCTCTTGCTCCGACGGCATGTCAACAAAAGACAGGAATTCCACGGCCGACGTTGAGCTTTACGGTGCCGGTTGCGCCGCCGGCTGCGGCGCTGGATGTGGTGCTTGA

Coding sequence (CDS)

ATGGCGAGGCTAATGAGAGAATTTGGCAGTCAAAATGGCAGCTTTGGCCTCGCCGGTGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGCATAATCTCCACCATAATTTTCTCTTGCTCCGACGGCATGTCAACAAAAGACAGGAATTCCACGGCCGACGTTGAGCTTTACGGTGCCGGTTGCGCCGCCGGCTGCGGCGCTGGATGTGGTGCTTGA

Protein sequence

MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELYGAGCAAGCGAGCGA
Homology
BLAST of Csor.00g066020 vs. NCBI nr
Match: KAG6584341.1 (hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147 bits (371), Expect = 1.78e-44
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60
          MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY
Sbjct: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60

Query: 61 GAGCAAGCGAGCGA 74
          GAGCAAGCGAGCGA
Sbjct: 61 GAGCAAGCGAGCGA 74

BLAST of Csor.00g066020 vs. NCBI nr
Match: KAE8652552.1 (hypothetical protein Csa_013579 [Cucumis sativus])

HSP 1 Score: 120 bits (301), Expect = 1.94e-33
Identity = 64/75 (85.33%), Postives = 66/75 (88.00%), Query Frame = 0

Query: 1   MARLMREFGSQNGSFGLAG-DIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVEL 60
           MARLMRE  SQNGSFGLAG + Y LFW ALFTLCIIST+IFSCSDGMS KDRNST DVEL
Sbjct: 29  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMS-KDRNSTVDVEL 88

Query: 61  YGAGCAAGCGAGCGA 74
           YG GCAAGCGAGCGA
Sbjct: 89  YGGGCAAGCGAGCGA 102

BLAST of Csor.00g066020 vs. NCBI nr
Match: KAG6572949.1 (hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102 bits (253), Expect = 1.58e-26
Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = 0

Query: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60
          MARL+ E GS +GSFGL+GDI  LF AALFTLCIIS I FSCSDG+S K+RNSTADVELY
Sbjct: 1  MARLIGEIGSVDGSFGLSGDISCLFLAALFTLCIISLITFSCSDGIS-KERNSTADVELY 60

Query: 61 GAGCAAGCGA 70
          G GCAAGCGA
Sbjct: 61 GGGCAAGCGA 69

BLAST of Csor.00g066020 vs. NCBI nr
Match: ONI09219.1 (hypothetical protein PRUPE_5G224700 [Prunus persica])

HSP 1 Score: 84.7 bits (208), Expect = 1.24e-19
Identity = 41/74 (55.41%), Postives = 57/74 (77.03%), Query Frame = 0

Query: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60
          M R+ RE GS +G  G+A   +L+FWAAL +LC++S I+FSC+DG+S+K++N+  D +LY
Sbjct: 1  MVRVWREIGSVDG--GVATANWLVFWAALVSLCLVSAIVFSCADGVSSKEKNTAGDTKLY 60

Query: 61 GAGCAAGCGAGCGA 74
          G GCAA CGA CGA
Sbjct: 61 GGGCAAECGAACGA 72

BLAST of Csor.00g066020 vs. NCBI nr
Match: CAB4281319.1 (unnamed protein product [Prunus armeniaca] >CAB4311731.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 84.7 bits (208), Expect = 1.24e-19
Identity = 42/74 (56.76%), Postives = 56/74 (75.68%), Query Frame = 0

Query: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60
          M R+ RE GS +G  G+A   +L+FWAAL +LC++S I+FSC+DG+S+K +N+  D ELY
Sbjct: 1  MLRVWREIGSVDG--GVATANWLVFWAALVSLCLVSVIVFSCADGVSSKGKNTAGDTELY 60

Query: 61 GAGCAAGCGAGCGA 74
          G GCAA CGA CGA
Sbjct: 61 GGGCAAECGAACGA 72

BLAST of Csor.00g066020 vs. ExPASy TrEMBL
Match: A0A0A0LQU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1)

HSP 1 Score: 120 bits (301), Expect = 4.16e-34
Identity = 64/75 (85.33%), Postives = 66/75 (88.00%), Query Frame = 0

Query: 1  MARLMREFGSQNGSFGLAG-DIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVEL 60
          MARLMRE  SQNGSFGLAG + Y LFW ALFTLCIIST+IFSCSDGMS KDRNST DVEL
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMS-KDRNSTVDVEL 60

Query: 61 YGAGCAAGCGAGCGA 74
          YG GCAAGCGAGCGA
Sbjct: 61 YGGGCAAGCGAGCGA 74

BLAST of Csor.00g066020 vs. ExPASy TrEMBL
Match: M5WF59 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G224700 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.01e-20
Identity = 41/74 (55.41%), Postives = 57/74 (77.03%), Query Frame = 0

Query: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60
          M R+ RE GS +G  G+A   +L+FWAAL +LC++S I+FSC+DG+S+K++N+  D +LY
Sbjct: 1  MVRVWREIGSVDG--GVATANWLVFWAALVSLCLVSAIVFSCADGVSSKEKNTAGDTKLY 60

Query: 61 GAGCAAGCGAGCGA 74
          G GCAA CGA CGA
Sbjct: 61 GGGCAAECGAACGA 72

BLAST of Csor.00g066020 vs. ExPASy TrEMBL
Match: A0A6J5UX91 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS34361 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.01e-20
Identity = 42/74 (56.76%), Postives = 56/74 (75.68%), Query Frame = 0

Query: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60
          M R+ RE GS +G  G+A   +L+FWAAL +LC++S I+FSC+DG+S+K +N+  D ELY
Sbjct: 1  MLRVWREIGSVDG--GVATANWLVFWAALVSLCLVSVIVFSCADGVSSKGKNTAGDTELY 60

Query: 61 GAGCAAGCGAGCGA 74
          G GCAA CGA CGA
Sbjct: 61 GGGCAAECGAACGA 72

BLAST of Csor.00g066020 vs. ExPASy TrEMBL
Match: A0A6P3ZT85 (uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC107418606 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.65e-19
Identity = 47/74 (63.51%), Postives = 55/74 (74.32%), Query Frame = 0

Query: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60
          M RL R+  S +GS G AG + L  W AL  +CIIS IIFSC+DG+S K++ STAD ELY
Sbjct: 1  MVRLWRDLASVHGS-GSAGFVVL--WLALLGVCIISAIIFSCADGVS-KEKTSTADTELY 60

Query: 61 GAGCAAGCGAGCGA 74
          G GCAAGCGAGCGA
Sbjct: 61 GGGCAAGCGAGCGA 70

BLAST of Csor.00g066020 vs. ExPASy TrEMBL
Match: A0A803R005 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.46e-17
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 0

Query: 1  MARLMREFGSQNGSFGLAGDIYLLFWAA-LFTLCIISTIIFSCSDGMSTKDRNSTADVEL 60
          M RL RE  + +G  G     +L+F    L TLCI+STIIFSC+DG+S K++ S  D EL
Sbjct: 1  MVRLWREVANVDGGVGTGSGAFLIFLLGFLVTLCILSTIIFSCADGVS-KEKTSQGDTEL 60

Query: 61 YGAGCAAGCGAGCGA 74
          YG GCAAGCGAGCGA
Sbjct: 61 YGGGCAAGCGAGCGA 74

BLAST of Csor.00g066020 vs. TAIR 10
Match: AT1G68238.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 4.5e-06
Identity = 24/55 (43.64%), Postives = 33/55 (60.00%), Query Frame = 0

Query: 19 GDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELYGAGCAAGCGAGCG 74
          G++ L  WAA+    +I+ +IFSCSD  S    N     ++ G+ CAAGCG GCG
Sbjct: 14 GEVSLYIWAAVVAFSVIAAVIFSCSDRASKPHTND----DVNGSSCAAGCGGGCG 64

BLAST of Csor.00g066020 vs. TAIR 10
Match: AT3G18250.1 (Putative membrane lipoprotein )

HSP 1 Score: 42.0 bits (97), Expect = 2.5e-04
Identity = 23/57 (40.35%), Postives = 35/57 (61.40%), Query Frame = 0

Query: 18 AGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELYGAGC-AAGCGAGCG 74
          A  ++ + + A+   CI+S ++FSC+DG+S  D  +T+     G GC  AGCG GCG
Sbjct: 21 ASYLFHVVFLAVIGCCILSALLFSCADGVS--DNRATSGTSTGGGGCGGAGCGGGCG 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6584341.11.78e-44100.00hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8652552.11.94e-3385.33hypothetical protein Csa_013579 [Cucumis sativus][more]
KAG6572949.11.58e-2678.57hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sorori... [more]
ONI09219.11.24e-1955.41hypothetical protein PRUPE_5G224700 [Prunus persica][more]
CAB4281319.11.24e-1956.76unnamed protein product [Prunus armeniaca] >CAB4311731.1 unnamed protein product... [more]
Match NameE-valueIdentityDescription
A0A0A0LQU74.16e-3485.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1[more]
M5WF596.01e-2055.41Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G224700 PE=4 SV=1[more]
A0A6J5UX916.01e-2056.76Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS34361 PE=4 S... [more]
A0A6P3ZT856.65e-1963.51uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC10741860... [more]
A0A803R0052.46e-1757.33Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G68238.14.5e-0643.64unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G18250.12.5e-0440.35Putative membrane lipoprotein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37199TRANSMEMBRANE PROTEINcoord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g066020.m01Csor.00g066020.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane