Csor.00g060820 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g060820
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	serine/arginine-rich splicing factor SR45a
Location	Csor_Chr03: 5992466 .. 5995362 (-)
RNA-Seq Expression	Csor.00g060820
Synteny	Csor.00g060820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSstart_codoninitialintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAGCTCTTATTTCTCAGTTCTATTTTTCTTTCTTTGTTTATTGTTGTTTTTATTTCATCGATAAAAGGTTTAACAATCGAGCGTTTCTGGTTCTGCGCAGGCCGATTCTCATCGCAAAAGGTGAGCTTATTTACGTTTTTTTGTAATGATTTGTTTTCTTGCGGTTGACGATCTTGGGGCTTTCTGTATCTAGGGCACGGAGATGATTTGTGTTGTAGCATTCATGATCTTCTGTAGCGTTGAACTTTTTAGCACTCCTACATGAAGGAAATAATGTCACGAGTCTTGAGTAATTTTAGAAGGATTTTATTTCATTCATTTAGATGCCTGTAACTAGGGTTGAGCATTTTCTTGACAATGCACTGGTGGCTGTAATCACTTTAGGGTTTTGGAAAAAGTAACAAGGTCATGCCTTACTTTTCTTTTTCTTTGTCTTGGGAAGTTCTAACAGGTAGTAATCATGAAATCAAATTAAAAGCAATTACATTGGGTAACTATTGTTGTAATTAATGGAGTTTGAGAGATTTGAGTATCCAAATTTTGAAGTTAATTTAGGGTCGGAATTGGGTCAAGTGCCATGTAAAAGAACTTTGGTCGCTTGAACTCGTACCCTTTGTTTTCATTTTAAAACATGGCTGTTGATGATTGAGCTGGGAATAATTTCTGATGATTTCCCTTCTCTTGTTCTGTTGGTTTCCTTTCCTTTTTCCATTTTGACCATATTAATTCGTCAGACTTGAAAACTCGTTCAGTCAGTAATTTACACATTAAGGATCAATAGAAACATGGGTGAAAGAGATAATGTGCGTTTACTATATTAAAAAACTTGGCAGTTTGATAATTTAGACCATTCCATTCTTTTAGAACATCCTCATTTTAATAATTCTAATGCATTTAGATCATCGGTGTTAGTACTACTTATGGTTGTAAGTGGCACAGGTACTCTCGATCTCCTTCTCCCTGGAGAGCTCCTTCAAGATCAAGATCTAGATCACGATCTAGGCCAAGGTCTAGATCCAGATCGTGGTCAAGGCCAAGGTCCCGAAGTCGTGGAAGGTTGGTTTTGATTTTTCTTTATTACCTGGATAAATGGAAAGTAGAAACTACTTTTATGTTTGTGAACTCTGTAGCTTAGAACCCTATTTTTATGGTTACACATGTTTCTGATACAGATCAAGATCCAGAAGTCGAGGAAGGTGTGTGTGTTTCTTCGGCTGGAACTCTAGACAAAATAATCAGCGCTCTATTTCAGTAGAATTGGATCTATTTGTACTTCTTTCTCATATATTGTTAGTGTTTGATTCTCCTTGGATAACATTTTTAGCTTCTTCCAGGGGGGAGAATGTCAATAACCCTGGGAATACGCTTTATGTCACTGGCTTATCTACAAGGGTCACTGAAAGAGACCTTGAAGAACACTTTTCCAAGGAGGGCAAGGTTAGCTTCTGAACCCTATAACTTGCAGATAATTGCATCATCGTGTGAGAAGTCCCTACTTGGATCATGATGTGAAACAAGTGGCATGACATAAATAAGACCGTATTTATTGTGTTTCTTGAAATTAAAAATGTTTTTATAGTATTTCCTGAATTAAAAAACATTTAAATGGAAATTCGGTAGATGACAGATGGTCTCAAGTTCAGTGTATTCATAATATTCTGTATTGAAAAGCAGAAATTGGATTAGACTCCAAATGGCCCGATGTTCTGCAATTACTTGTTTTATTGATCACAATGTAGTCAGTTTATTCTTCCTTTCCTAATGCTTCTATTATTTGCAGGTATCTTCTTGTTTCCTTGTGGTTGAACCTCGAACTCGGATTTCCCGTGGTTTTGCATTTGTAACGATGGACAATGTTGATGATGCTAATCGGTGTGTTAAGCATCTCAACCAGTCAATTCTAGAAGGTCGATATATAACCGTGGAGAAGGTACTACTATTGTTCTGCTCTGGATAGCCTTGAAGAAATTTGATTGTTTTCTTTTTTGGTTTTTTCCCTTAACTTGGAGGTTTTCTGGTTATATTCAGAACAAGTTGTGTGAGCTATGTTGGCAGCAATCAAAGATGATGAGTTCATCCATGTCAACTTTAGTGAAACAGCTTGGTCAATGACAAGCTTAAACAACAGATTTCAAATGCGCCTGATCAACTAAACATATCAACTATATTGCCCAACAACTTTTCTACATCAGCATTCACTTTCAACACAACTAACCAACGGACATTATCAAGAACTTTCTAATCAGGCTTTATGGTATTTCATGCCTAGTCATTGGACACTAGTCAATTTTTCCCGACTCATGATATCAAGTGTGCCCATTTTAGGTGGCCAGTCCCCCCCTATGAACAATTTCAAAACTAGTTTTTGCATTAAGTGCTCACCGTGAAAACTATACAAACAATATAACCCTTTTATATAGTCTTGGGACATAGAGGTTAACAAGAGAAGTGAGATGACACCTTTTTTGTCTTTCAGTCACGGAGGAAACGGCCAAGAACTCCAACGCCAGGACACTACTTGGGGTTGAAAAGCACCAGAGACTCTGGTAAGTGTAACCTGCCAATTTATTCAAAACGATGGTTGTTTCATATATTCTGTGCTTTAAATTTCAATCTACTTAAACATTACCTTAAATAACTTTGTTGGTTATTGTATTAGGCTACCGTGGCGAACGAGGTAGCAGGTATCGTGGTGGCTCCTTCCGCGAGGACTATGGGCATCGTCGATCCCCAAGACGCTCGCCATATCGAGGGGCCCGAGAGTACTCCCCTAGACACTCACCGCCTCCATATGGTGGTGGGAGATCAAGGAGGGATCACTCTAGGTCGCCTCCTTACTCTCCTTACGGCGGCGGCAGCCCAGATAGGAGGTATCCTCGTGGCTCTAGGTGA

mRNA sequence

ATGGCCGATTCTCATCGCAAAAGGTACTCTCGATCTCCTTCTCCCTGGAGAGCTCCTTCAAGATCAAGATCTAGATCACGATCTAGGCCAAGGTCTAGATCCAGATCGTGGTCAAGGCCAAGGTCCCGAAGTCGTGGAAGATCAAGATCCAGAAGTCGAGGAAGGGGGGAGAATGTCAATAACCCTGGGAATACGCTTTATGTCACTGGCTTATCTACAAGGGTCACTGAAAGAGACCTTGAAGAACACTTTTCCAAGGAGGGCAAGGTATCTTCTTGTTTCCTTGTGGTTGAACCTCGAACTCGGATTTCCCGTGGTTTTGCATTTGTAACGATGGACAATGTTGATGATGCTAATCGGTGTGTTAAGCATCTCAACCAGTCAATTCTAGAAGGTCGATATATAACCGTGGAGAAGTCACGGAGGAAACGGCCAAGAACTCCAACGCCAGGACACTACTTGGGGTTGAAAAGCACCAGAGACTCTGGCTACCGTGGCGAACGAGGTAGCAGGTATCGTGGTGGCTCCTTCCGCGAGGACTATGGGCATCGTCGATCCCCAAGACGCTCGCCATATCGAGGGGCCCGAGAGTACTCCCCTAGACACTCACCGCCTCCATATGGTGGTGGGAGATCAAGGAGGGATCACTCTAGGTCGCCTCCTTACTCTCCTTACGGCGGCGGCAGCCCAGATAGGAGGTATCCTCGTGGCTCTAGGTGA

Coding sequence (CDS)

ATGGCCGATTCTCATCGCAAAAGGTACTCTCGATCTCCTTCTCCCTGGAGAGCTCCTTCAAGATCAAGATCTAGATCACGATCTAGGCCAAGGTCTAGATCCAGATCGTGGTCAAGGCCAAGGTCCCGAAGTCGTGGAAGATCAAGATCCAGAAGTCGAGGAAGGGGGGAGAATGTCAATAACCCTGGGAATACGCTTTATGTCACTGGCTTATCTACAAGGGTCACTGAAAGAGACCTTGAAGAACACTTTTCCAAGGAGGGCAAGGTATCTTCTTGTTTCCTTGTGGTTGAACCTCGAACTCGGATTTCCCGTGGTTTTGCATTTGTAACGATGGACAATGTTGATGATGCTAATCGGTGTGTTAAGCATCTCAACCAGTCAATTCTAGAAGGTCGATATATAACCGTGGAGAAGTCACGGAGGAAACGGCCAAGAACTCCAACGCCAGGACACTACTTGGGGTTGAAAAGCACCAGAGACTCTGGCTACCGTGGCGAACGAGGTAGCAGGTATCGTGGTGGCTCCTTCCGCGAGGACTATGGGCATCGTCGATCCCCAAGACGCTCGCCATATCGAGGGGCCCGAGAGTACTCCCCTAGACACTCACCGCCTCCATATGGTGGTGGGAGATCAAGGAGGGATCACTCTAGGTCGCCTCCTTACTCTCCTTACGGCGGCGGCAGCCCAGATAGGAGGTATCCTCGTGGCTCTAGGTGA

Protein sequence

MADSHRKRYSRSPSPWRAPSRSRSRSRSRPRSRSRSWSRPRSRSRGRSRSRSRGRGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYRGGSFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPDRRYPRGSR

Homology

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BLAST of Csor.00g060820 vs. ExPASy Swiss-Prot
Match: Q84TH4 (Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR45A PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.2e-36
Identity = 111/223 (49.78%), Postives = 133/223 (59.64%), Query Frame = 0


Query: 17  RAPSRSRSRSRSRPRSRSRSWSRPRSRSRGRSRSRSRGRGENVNNPGNTLYVTGLSTRVT 76
           R+P     RSR  P        R RS SR  SRS +R    +  NPGN+LYVTGLS RVT
Sbjct: 28  RSPMSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVT 87

Query: 77  ERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDANRCVKHLNQSILEGRYIT 136
           ERDLE+HF+KEGKV+   LV++P TR SRGF F++M +V DANRC++ L+ S+L+GR IT
Sbjct: 88  ERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVIT 147

Query: 137 VEKSRRKRPRTPTPGHYLGLKSTRD---------------SGYRGERGSRYRGGSFREDY 196
           VEK+RR+R RTPTPG YLGL++ R                S  R    S  RG S+   Y
Sbjct: 148 VEKARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRSVSCSRSRSRSYSSDRGRSYSPSY 207

Query: 197 GHR-RSPRRSP-YRGAREYSPRHSPPPYGGGRSRRDHSRSPPY 223
           G R RS   SP YR  R YSP  SP P      RRD S SP Y
Sbjct: 208 GRRGRSSSYSPFYRRRRFYSPSRSPSPDDRYNRRRDRSYSPYY 250

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BLAST of Csor.00g060820 vs. ExPASy Swiss-Prot
Match: Q3ZBT6 (Transformer-2 protein homolog beta OS=Bos taurus OX=9913 GN=TRA2B PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.3e-18
Identity = 102/245 (41.63%), Postives = 121/245 (49.39%), Query Frame = 0


Query: 3   DSHRKR-YSRSPSPWRAPS---------RSRSRSRSRPRSRSRSWSRPRSRSRGRSRSRS 62
           DS R R  SRS S  R+ S         RSRSRSRS  RSRSRS+SR   R    S S  
Sbjct: 42  DSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPM 101

Query: 63  RGRGENVNN-----PGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGF 122
             R  +V N     P   L V GLS   TERDL E FSK G ++   +V + ++R SRGF
Sbjct: 102 STRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGF 161

Query: 123 AFVTMDNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGE 182
           AFV  +NVDDA    +  N   L+GR I V+ S  KRP TPTPG Y+G  +   S  R  
Sbjct: 162 AFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDY 221

Query: 183 RGSRYRGGSFREDYGHRRSPR-----RSPYRGAREYSP---RHSPPPYGGGRSRRDHSRS 225
               Y  G    DY + RS R        +R A++      R SP PY      R  SRS
Sbjct: 222 YDRGYDRGYDDRDY-YSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRS 281

[Close]

BLAST of Csor.00g060820 vs. ExPASy Swiss-Prot
Match: P62995 (Transformer-2 protein homolog beta OS=Homo sapiens OX=9606 GN=TRA2B PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.3e-18
Identity = 102/245 (41.63%), Postives = 121/245 (49.39%), Query Frame = 0


Query: 3   DSHRKR-YSRSPSPWRAPS---------RSRSRSRSRPRSRSRSWSRPRSRSRGRSRSRS 62
           DS R R  SRS S  R+ S         RSRSRSRS  RSRSRS+SR   R    S S  
Sbjct: 42  DSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPM 101

Query: 63  RGRGENVNN-----PGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGF 122
             R  +V N     P   L V GLS   TERDL E FSK G ++   +V + ++R SRGF
Sbjct: 102 STRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGF 161

Query: 123 AFVTMDNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGE 182
           AFV  +NVDDA    +  N   L+GR I V+ S  KRP TPTPG Y+G  +   S  R  
Sbjct: 162 AFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDY 221

Query: 183 RGSRYRGGSFREDYGHRRSPR-----RSPYRGAREYSP---RHSPPPYGGGRSRRDHSRS 225
               Y  G    DY + RS R        +R A++      R SP PY      R  SRS
Sbjct: 222 YDRGYDRGYDDRDY-YSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRS 281

[Close]

BLAST of Csor.00g060820 vs. ExPASy Swiss-Prot
Match: P62996 (Transformer-2 protein homolog beta OS=Mus musculus OX=10090 GN=Tra2b PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.3e-18
Identity = 102/245 (41.63%), Postives = 121/245 (49.39%), Query Frame = 0


Query: 3   DSHRKR-YSRSPSPWRAPS---------RSRSRSRSRPRSRSRSWSRPRSRSRGRSRSRS 62
           DS R R  SRS S  R+ S         RSRSRSRS  RSRSRS+SR   R    S S  
Sbjct: 42  DSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPM 101

Query: 63  RGRGENVNN-----PGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGF 122
             R  +V N     P   L V GLS   TERDL E FSK G ++   +V + ++R SRGF
Sbjct: 102 STRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGF 161

Query: 123 AFVTMDNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGE 182
           AFV  +NVDDA    +  N   L+GR I V+ S  KRP TPTPG Y+G  +   S  R  
Sbjct: 162 AFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDY 221

Query: 183 RGSRYRGGSFREDYGHRRSPR-----RSPYRGAREYSP---RHSPPPYGGGRSRRDHSRS 225
               Y  G    DY + RS R        +R A++      R SP PY      R  SRS
Sbjct: 222 YDRGYDRGYDDRDY-YSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRS 281

[Close]

BLAST of Csor.00g060820 vs. ExPASy Swiss-Prot
Match: P62997 (Transformer-2 protein homolog beta OS=Rattus norvegicus OX=10116 GN=Tra2b PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.3e-18
Identity = 102/245 (41.63%), Postives = 121/245 (49.39%), Query Frame = 0


Query: 3   DSHRKR-YSRSPSPWRAPS---------RSRSRSRSRPRSRSRSWSRPRSRSRGRSRSRS 62
           DS R R  SRS S  R+ S         RSRSRSRS  RSRSRS+SR   R    S S  
Sbjct: 42  DSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPM 101

Query: 63  RGRGENVNN-----PGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGF 122
             R  +V N     P   L V GLS   TERDL E FSK G ++   +V + ++R SRGF
Sbjct: 102 STRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGF 161

Query: 123 AFVTMDNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGE 182
           AFV  +NVDDA    +  N   L+GR I V+ S  KRP TPTPG Y+G  +   S  R  
Sbjct: 162 AFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDY 221

Query: 183 RGSRYRGGSFREDYGHRRSPR-----RSPYRGAREYSP---RHSPPPYGGGRSRRDHSRS 225
               Y  G    DY + RS R        +R A++      R SP PY      R  SRS
Sbjct: 222 YDRGYDRGYDDRDY-YSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRS 281

[Close]

BLAST of Csor.00g060820 vs. NCBI nr
Match: XP_022950652.1 (serine/arginine-rich splicing factor SR45a [Cucurbita moschata] >XP_022978005.1 serine/arginine-rich splicing factor SR45a [Cucurbita maxima] >XP_023543883.1 serine/arginine-rich splicing factor SR45a [Cucurbita pepo subsp. pepo] >KAG6603882.1 Serine/arginine-rich splicing factor SR45a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 458 bits (1178), Expect = 3.48e-162
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0


Query: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRSRPRSRSRSWSRPRSRSRGRSRSRSRGRGENVN 60
           MADSHRKRYSRSPSPWRAPSRSRSRSRSRPRSRSRSWSRPRSRSRGRSRSRSRGRGENVN
Sbjct: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRSRPRSRSRSWSRPRSRSRGRSRSRSRGRGENVN 60

Query: 61  NPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDANR 120
           NPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDANR
Sbjct: 61  NPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDANR 120

Query: 121 CVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYRGGSFRED 180
           CVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYRGGSFRED
Sbjct: 121 CVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYRGGSFRED 180

Query: 181 YGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPDRRYPRGSR 239
           YGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPDRRYPRGSR
Sbjct: 181 YGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPDRRYPRGSR 239

[Close]

BLAST of Csor.00g060820 vs. NCBI nr
Match: XP_016899368.1 (PREDICTED: serine/arginine-rich splicing factor SR45a [Cucumis melo])

HSP 1 Score: 407 bits (1046), Expect = 4.90e-142
Identity = 225/243 (92.59%), Postives = 232/243 (95.47%), Query Frame = 0


Query: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRSR--PRSRSRSWSRPRSRSRGRSRSRSRGRGEN 60
           MAD HRKRYSRSPSPWRAPSRSRSRSRSR  PRSRSRSWSRPRS SRGRSRSRSRGR ++
Sbjct: 1   MADVHRKRYSRSPSPWRAPSRSRSRSRSRSRPRSRSRSWSRPRSPSRGRSRSRSRGR-DH 60

Query: 61  VNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDA 120
            NNPGNTLYVTGLSTRVTERDLE+HFSKEGKV+SCFLVVEPRTRISRGFAFVTMDNVDDA
Sbjct: 61  ANNPGNTLYVTGLSTRVTERDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVDDA 120

Query: 121 NRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYRGG-SF 180
           NRCVKHLNQS+LEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRG+RGSRYRGG SF
Sbjct: 121 NRCVKHLNQSVLEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGDRGSRYRGGGSF 180

Query: 181 REDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPP-YSPYGGGSPDRRYPR 239
           REDYG+RRSPRRSPYRGAREYSPRHSPP YGGGRSRRDHSRSPP YSP  GGSPDRRYPR
Sbjct: 181 REDYGYRRSPRRSPYRGAREYSPRHSPP-YGGGRSRRDHSRSPPPYSPPYGGSPDRRYPR 240

[Close]

BLAST of Csor.00g060820 vs. NCBI nr
Match: XP_031743118.1 (serine/arginine-rich splicing factor SR45a [Cucumis sativus])

HSP 1 Score: 399 bits (1025), Expect = 8.64e-139
Identity = 227/246 (92.28%), Postives = 232/246 (94.31%), Query Frame = 0


Query: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRSR--PRSRSRSWSRPRSRSRGRSRSRSRGRGEN 60
           MAD HRKRYSRSPSPW+APSRSRSRSRSR  PRSRSRSWSRPRS SRGRSRSRSRGR E+
Sbjct: 1   MADVHRKRYSRSPSPWKAPSRSRSRSRSRSRPRSRSRSWSRPRSPSRGRSRSRSRGR-EH 60

Query: 61  VNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDA 120
            NNPGNTLYVTGLSTRVTERDLEEHFSKEGKV+SCFLVVEPRTRISRGFAFVTMDNVDDA
Sbjct: 61  ANNPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVDDA 120

Query: 121 NRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRG-ERGS-RYRGG- 180
           NRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRG +RGS RYRGG 
Sbjct: 121 NRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGGDRGSSRYRGGG 180

Query: 181 -SFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPP-YSPYGGGSPDRR 239
            SFREDYG+RRSPRRSPYRGAREYSPRHSPP YGGGRSRRDHSRSPP YSP  GGSPDRR
Sbjct: 181 GSFREDYGYRRSPRRSPYRGAREYSPRHSPP-YGGGRSRRDHSRSPPPYSPPYGGSPDRR 240

[Close]

BLAST of Csor.00g060820 vs. NCBI nr
Match: XP_038881911.1 (serine/arginine-rich splicing factor SR45a [Benincasa hispida])

HSP 1 Score: 395 bits (1016), Expect = 1.82e-137
Identity = 221/244 (90.57%), Postives = 230/244 (94.26%), Query Frame = 0


Query: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRSR--PRSRSRSWSRPRSRSRGRSRSRSRGRGEN 60
           MADSHRKRYSRSPSPWRAPSRSRSRSRSR  PRSRSRSWSRPRS SRGRSRSRSRGR ++
Sbjct: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRSRSRPRSRSRSWSRPRSPSRGRSRSRSRGR-DH 60

Query: 61  VNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDA 120
            +NPGNTLYVTGLSTRVTERDLEEHFSKEGKV+SCFLVVEPRTRISRGFAFVTMDNVDDA
Sbjct: 61  AHNPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVDDA 120

Query: 121 NRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYRGG-SF 180
           NRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRD+GYRG+RGSRYRGG SF
Sbjct: 121 NRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDAGYRGDRGSRYRGGGSF 180

Query: 181 REDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSP--YGGGSPDRRYP 239
           R+DYG+RRSPRRSPYRGAREYSP    PPYGG RSRRDHSRSPPY+P  YGG SPDRRYP
Sbjct: 181 RDDYGYRRSPRRSPYRGAREYSPPRHSPPYGG-RSRRDHSRSPPYTPPPYGG-SPDRRYP 240

[Close]

BLAST of Csor.00g060820 vs. NCBI nr
Match: KAE8647621.1 (hypothetical protein Csa_003197 [Cucumis sativus])

HSP 1 Score: 399 bits (1025), Expect = 5.82e-137
Identity = 227/246 (92.28%), Postives = 232/246 (94.31%), Query Frame = 0


Query: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRSR--PRSRSRSWSRPRSRSRGRSRSRSRGRGEN 60
           MAD HRKRYSRSPSPW+APSRSRSRSRSR  PRSRSRSWSRPRS SRGRSRSRSRGR E+
Sbjct: 1   MADVHRKRYSRSPSPWKAPSRSRSRSRSRSRPRSRSRSWSRPRSPSRGRSRSRSRGR-EH 60

Query: 61  VNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDA 120
            NNPGNTLYVTGLSTRVTERDLEEHFSKEGKV+SCFLVVEPRTRISRGFAFVTMDNVDDA
Sbjct: 61  ANNPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVDDA 120

Query: 121 NRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRG-ERGS-RYRGG- 180
           NRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRG +RGS RYRGG 
Sbjct: 121 NRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGGDRGSSRYRGGG 180

Query: 181 -SFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPP-YSPYGGGSPDRR 239
            SFREDYG+RRSPRRSPYRGAREYSPRHSPP YGGGRSRRDHSRSPP YSP  GGSPDRR
Sbjct: 181 GSFREDYGYRRSPRRSPYRGAREYSPRHSPP-YGGGRSRRDHSRSPPPYSPPYGGSPDRR 240

[Close]

BLAST of Csor.00g060820 vs. ExPASy TrEMBL
Match: A0A6J1INV2 (serine/arginine-rich splicing factor SR45a OS=Cucurbita maxima OX=3661 GN=LOC111478126 PE=4 SV=1)

HSP 1 Score: 458 bits (1178), Expect = 1.68e-162
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0


Query: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRSRPRSRSRSWSRPRSRSRGRSRSRSRGRGENVN 60
           MADSHRKRYSRSPSPWRAPSRSRSRSRSRPRSRSRSWSRPRSRSRGRSRSRSRGRGENVN
Sbjct: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRSRPRSRSRSWSRPRSRSRGRSRSRSRGRGENVN 60

Query: 61  NPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDANR 120
           NPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDANR
Sbjct: 61  NPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDANR 120

Query: 121 CVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYRGGSFRED 180
           CVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYRGGSFRED
Sbjct: 121 CVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYRGGSFRED 180

Query: 181 YGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPDRRYPRGSR 239
           YGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPDRRYPRGSR
Sbjct: 181 YGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPDRRYPRGSR 239

[Close]

BLAST of Csor.00g060820 vs. ExPASy TrEMBL
Match: A0A6J1GFF0 (serine/arginine-rich splicing factor SR45a OS=Cucurbita moschata OX=3662 GN=LOC111453689 PE=4 SV=1)

HSP 1 Score: 458 bits (1178), Expect = 1.68e-162
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0


Query: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRSRPRSRSRSWSRPRSRSRGRSRSRSRGRGENVN 60
           MADSHRKRYSRSPSPWRAPSRSRSRSRSRPRSRSRSWSRPRSRSRGRSRSRSRGRGENVN
Sbjct: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRSRPRSRSRSWSRPRSRSRGRSRSRSRGRGENVN 60

Query: 61  NPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDANR 120
           NPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDANR
Sbjct: 61  NPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDANR 120

Query: 121 CVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYRGGSFRED 180
           CVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYRGGSFRED
Sbjct: 121 CVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYRGGSFRED 180

Query: 181 YGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPDRRYPRGSR 239
           YGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPDRRYPRGSR
Sbjct: 181 YGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPDRRYPRGSR 239

[Close]

BLAST of Csor.00g060820 vs. ExPASy TrEMBL
Match: A0A1S4DTT1 (serine/arginine-rich splicing factor SR45a OS=Cucumis melo OX=3656 GN=LOC103485170 PE=4 SV=1)

HSP 1 Score: 407 bits (1046), Expect = 2.37e-142
Identity = 225/243 (92.59%), Postives = 232/243 (95.47%), Query Frame = 0


Query: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRSR--PRSRSRSWSRPRSRSRGRSRSRSRGRGEN 60
           MAD HRKRYSRSPSPWRAPSRSRSRSRSR  PRSRSRSWSRPRS SRGRSRSRSRGR ++
Sbjct: 1   MADVHRKRYSRSPSPWRAPSRSRSRSRSRSRPRSRSRSWSRPRSPSRGRSRSRSRGR-DH 60

Query: 61  VNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDA 120
            NNPGNTLYVTGLSTRVTERDLE+HFSKEGKV+SCFLVVEPRTRISRGFAFVTMDNVDDA
Sbjct: 61  ANNPGNTLYVTGLSTRVTERDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVDDA 120

Query: 121 NRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYRGG-SF 180
           NRCVKHLNQS+LEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRG+RGSRYRGG SF
Sbjct: 121 NRCVKHLNQSVLEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGDRGSRYRGGGSF 180

Query: 181 REDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPP-YSPYGGGSPDRRYPR 239
           REDYG+RRSPRRSPYRGAREYSPRHSPP YGGGRSRRDHSRSPP YSP  GGSPDRRYPR
Sbjct: 181 REDYGYRRSPRRSPYRGAREYSPRHSPP-YGGGRSRRDHSRSPPPYSPPYGGSPDRRYPR 240

[Close]

BLAST of Csor.00g060820 vs. ExPASy TrEMBL
Match: A0A0A0KMM4 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G507340 PE=4 SV=1)

HSP 1 Score: 399 bits (1025), Expect = 4.18e-139
Identity = 227/246 (92.28%), Postives = 232/246 (94.31%), Query Frame = 0


Query: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRSR--PRSRSRSWSRPRSRSRGRSRSRSRGRGEN 60
           MAD HRKRYSRSPSPW+APSRSRSRSRSR  PRSRSRSWSRPRS SRGRSRSRSRGR E+
Sbjct: 1   MADVHRKRYSRSPSPWKAPSRSRSRSRSRSRPRSRSRSWSRPRSPSRGRSRSRSRGR-EH 60

Query: 61  VNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDA 120
            NNPGNTLYVTGLSTRVTERDLEEHFSKEGKV+SCFLVVEPRTRISRGFAFVTMDNVDDA
Sbjct: 61  ANNPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVDDA 120

Query: 121 NRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRG-ERGS-RYRGG- 180
           NRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRG +RGS RYRGG 
Sbjct: 121 NRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGGDRGSSRYRGGG 180

Query: 181 -SFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPP-YSPYGGGSPDRR 239
            SFREDYG+RRSPRRSPYRGAREYSPRHSPP YGGGRSRRDHSRSPP YSP  GGSPDRR
Sbjct: 181 GSFREDYGYRRSPRRSPYRGAREYSPRHSPP-YGGGRSRRDHSRSPPPYSPPYGGSPDRR 240

[Close]

BLAST of Csor.00g060820 vs. ExPASy TrEMBL
Match: A0A6J1KT61 (serine/arginine-rich splicing factor SR45a-like OS=Cucurbita maxima OX=3661 GN=LOC111497374 PE=4 SV=1)

HSP 1 Score: 384 bits (986), Expect = 2.65e-133
Identity = 215/241 (89.21%), Postives = 222/241 (92.12%), Query Frame = 0


Query: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRSR--PRSRSRSWSRPRSRSRGRSRSRSRGRGEN 60
           MA SHRKR+SRSPSPWRAPSRSRSRSRSR  PRSRSRSWSRPRS+SRGRSRSRSRGR EN
Sbjct: 1   MAGSHRKRHSRSPSPWRAPSRSRSRSRSRSRPRSRSRSWSRPRSQSRGRSRSRSRGR-EN 60

Query: 61  VNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDA 120
             NPGNTLYVTGLS RVTERDLEEHFSKEGKV+SCFLVVEPRTRISRGFAFV MDNVDDA
Sbjct: 61  ALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDNVDDA 120

Query: 121 NRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYRGGSFR 180
           NRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLK+TRDSGYR +RG RYRGGS R
Sbjct: 121 NRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKNTRDSGYRDDRG-RYRGGSLR 180

Query: 181 EDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPDRRYPRGS 239
           +DYG+RRSPRRSPYRG REYSPRHSP    GGRSRRDHSRSPPYSPYG  SPD RYPRGS
Sbjct: 181 DDYGYRRSPRRSPYRGTREYSPRHSP--LYGGRSRRDHSRSPPYSPYG--SPDSRYPRGS 235

[Close]

BLAST of Csor.00g060820 vs. TAIR 10
Match: AT4G35785.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 243.0 bits (619), Expect = 2.4e-64
Identity = 166/247 (67.21%), Postives = 185/247 (74.90%), Query Frame = 0


Query: 1   MADS-HRKRYSRSPSP----WRAPSRSRSRSRSRPRSRSRSWSRPR----SRSRGRSRSR 60
           MADS  R+R SRSPSP     R+ SRSRSRSRSRPR RSRS S PR    SRSRGRSRSR
Sbjct: 1   MADSPQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSRSR 60

Query: 61  SRGRGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVT 120
           SRGR E V NPG TLYVTGLSTRVT++DLE HF+KEGKV+SCFLV+EPRTR+SRGFAFVT
Sbjct: 61  SRGRSE-VENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVT 120

Query: 121 MDNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSR 180
           M ++ DA RC+K+LNQS+LEGRYITVE+SRRKRPRTPTPGHYLGLKS+RDS   G R SR
Sbjct: 121 MSSLKDAERCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSSRDSDREG-RSSR 180

Query: 181 YRGGSFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPD 239
            R    R+DY  RRSPR       R+YSPR         RSRRD S    YSP+ G SP+
Sbjct: 181 GRHYD-RDDYRDRRSPR-------RDYSPRDE------RRSRRDRS----YSPH-GRSPE 226

[Close]

BLAST of Csor.00g060820 vs. TAIR 10
Match: AT4G35785.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 240.0 bits (611), Expect = 2.0e-63
Identity = 162/245 (66.12%), Postives = 181/245 (73.88%), Query Frame = 0


Query: 1   MADS-HRKRYSRSPSP----WRAPSRSRSRSRSRP--RSRSRSWSRPRSRSRGRSRSRSR 60
           MADS  R+R SRSPSP     R+ SRSRSRSRSRP  RSRSRS  RP S SR R RSRSR
Sbjct: 1   MADSPQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSRSR 60

Query: 61  GRGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMD 120
            RG  V NPG TLYVTGLSTRVT++DLE HF+KEGKV+SCFLV+EPRTR+SRGFAFVTM 
Sbjct: 61  SRGSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMS 120

Query: 121 NVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYR 180
           ++ DA RC+K+LNQS+LEGRYITVE+SRRKRPRTPTPGHYLGLKS+RDS   G R SR R
Sbjct: 121 SLKDAERCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSSRDSDREG-RSSRGR 180

Query: 181 GGSFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPDRR 239
               R+DY  RRSPR       R+YSPR         RSRRD S    YSP+ G SP+RR
Sbjct: 181 HYD-RDDYRDRRSPR-------RDYSPRDE------RRSRRDRS----YSPH-GRSPERR 225

[Close]

BLAST of Csor.00g060820 vs. TAIR 10
Match: AT4G35785.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 181.4 bits (459), Expect = 8.5e-46
Identity = 110/148 (74.32%), Postives = 124/148 (83.78%), Query Frame = 0


Query: 1   MADS-HRKRYSRSPSP----WRAPSRSRSRSRSRPRSRSRSWSRPR----SRSRGRSRSR 60
           MADS  R+R SRSPSP     R+ SRSRSRSRSRPR RSRS S PR    SRSRGRSRSR
Sbjct: 1   MADSPQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSRSR 60

Query: 61  SRGRGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVT 120
           SRGR E V NPG TLYVTGLSTRVT++DLE HF+KEGKV+SCFLV+EPRTR+SRGFAFVT
Sbjct: 61  SRGRSE-VENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVT 120

Query: 121 MDNVDDANRCVKHLNQSILEGRYITVEK 140
           M ++ DA RC+K+LNQS+LEGRYITVE+
Sbjct: 121 MSSLKDAERCIKYLNQSVLEGRYITVER 147

[Close]

BLAST of Csor.00g060820 vs. TAIR 10
Match: AT4G35785.4 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 172.6 bits (436), Expect = 3.9e-43
Identity = 108/161 (67.08%), Postives = 122/161 (75.78%), Query Frame = 0


Query: 1   MADS-HRKRYSRSPSP----WRAPSRSRSRSRSRPRSRSRSWSRPR----SRSRGR---- 60
           MADS  R+R SRSPSP     R+ SRSRSRSRSRPR RSRS S PR    SRSRGR    
Sbjct: 1   MADSPQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRILRG 60

Query: 61  ---------SRSRSRGRGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVE 120
                     RSRSR RG  V NPG TLYVTGLSTRVT++DLE HF+KEGKV+SCFLV+E
Sbjct: 61  NLFFITCTLCRSRSRSRGSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVME 120

Query: 121 PRTRISRGFAFVTMDNVDDANRCVKHLNQSILEGRYITVEK 140
           PRTR+SRGFAFVTM ++ DA RC+K+LNQS+LEGRYITVE+
Sbjct: 121 PRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER 161

[Close]

BLAST of Csor.00g060820 vs. TAIR 10
Match: AT4G35785.5 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 172.6 bits (436), Expect = 3.9e-43
Identity = 108/161 (67.08%), Postives = 122/161 (75.78%), Query Frame = 0


Query: 1   MADS-HRKRYSRSPSP----WRAPSRSRSRSRSRPRSRSRSWSRPR----SRSRGR---- 60
           MADS  R+R SRSPSP     R+ SRSRSRSRSRPR RSRS S PR    SRSRGR    
Sbjct: 1   MADSPQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRILRG 60

Query: 61  ---------SRSRSRGRGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVE 120
                     RSRSR RG  V NPG TLYVTGLSTRVT++DLE HF+KEGKV+SCFLV+E
Sbjct: 61  NLFFITCTLCRSRSRSRGSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVME 120

Query: 121 PRTRISRGFAFVTMDNVDDANRCVKHLNQSILEGRYITVEK 140
           PRTR+SRGFAFVTM ++ DA RC+K+LNQS+LEGRYITVE+
Sbjct: 121 PRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER 161

The following BLAST results are available for this feature:

BLAST of Csor.00g060820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84TH4	1.2e-36	49.78	Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q3ZBT6	3.3e-18	41.63	Transformer-2 protein homolog beta OS=Bos taurus OX=9913 GN=TRA2B PE=2 SV=1	[more]
P62995	3.3e-18	41.63	Transformer-2 protein homolog beta OS=Homo sapiens OX=9606 GN=TRA2B PE=1 SV=1	[more]
P62996	3.3e-18	41.63	Transformer-2 protein homolog beta OS=Mus musculus OX=10090 GN=Tra2b PE=1 SV=1	[more]
P62997	3.3e-18	41.63	Transformer-2 protein homolog beta OS=Rattus norvegicus OX=10116 GN=Tra2b PE=1 S...	[more]

BLAST of Csor.00g060820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022950652.1	3.48e-162	100.00	serine/arginine-rich splicing factor SR45a [Cucurbita moschata] >XP_022978005.1 ...	[more]
XP_016899368.1	4.90e-142	92.59	PREDICTED: serine/arginine-rich splicing factor SR45a [Cucumis melo]	[more]
XP_031743118.1	8.64e-139	92.28	serine/arginine-rich splicing factor SR45a [Cucumis sativus]	[more]
XP_038881911.1	1.82e-137	90.57	serine/arginine-rich splicing factor SR45a [Benincasa hispida]	[more]
KAE8647621.1	5.82e-137	92.28	hypothetical protein Csa_003197 [Cucumis sativus]	[more]

BLAST of Csor.00g060820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1INV2	1.68e-162	100.00	serine/arginine-rich splicing factor SR45a OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1GFF0	1.68e-162	100.00	serine/arginine-rich splicing factor SR45a OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A1S4DTT1	2.37e-142	92.59	serine/arginine-rich splicing factor SR45a OS=Cucumis melo OX=3656 GN=LOC1034851...	[more]
A0A0A0KMM4	4.18e-139	92.28	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G507340 PE=4 SV...	[more]
A0A6J1KT61	2.65e-133	89.21	serine/arginine-rich splicing factor SR45a-like OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Csor.00g060820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35785.2	2.4e-64	67.21	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.1	2.0e-63	66.12	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.3	8.5e-46	74.32	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.4	3.9e-43	67.08	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.5	3.9e-43	67.08	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 65..138 e-value: 3.8E-25 score: 99.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 66..135 e-value: 3.1E-18 score: 65.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 64..142 score: 17.216459
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 3..149 e-value: 1.3E-30 score: 108.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..239
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..50
None	No IPR available	PANTHER	PTHR48034:SF11	RNA RECOGNITION MOTIF	coord: 2..235
None	No IPR available	PANTHER	PTHR48034	TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED	coord: 2..235
None	No IPR available	CDD	cd12382	RRM_RBMX_like	coord: 63..142 e-value: 8.99723E-40 score: 130.036
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 11..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g060820.m01	Csor.00g060820.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding