Csor.00g051780 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g051780
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionArginine decarboxylase 2
LocationCsor_Chr12: 3067291 .. 3067950 (+)
RNA-Seq ExpressionCsor.00g051780
SyntenyCsor.00g051780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGAAGAAGAAGAAGAACCTGTTATTGAGCAAGTTTTTGATGGCTACCACAGTGTTGTCCTCAAGAACACCACGGTACACAATTCCATATCCGCCTTCACCAATGACATGTTCATCCGCAAAGCCATTAGTAGAACACTCAAGCTCTCTGAGAGTATACCTATGTCCCCAACCCAAATGCGAAACCACCGACAACTGCTCACCGGACCGAACTTCTCCACTACCGTGACACGAACCGCCGTCCCTCTCCGGGAACGAAACCCGGCGGTCCTTCCCAATTTCAATGCGGGTTCTACGGCGTCCATTACCTGGGCTCCCTTGTTCCGTCTGAAGCTGTTCTGCCTCCGGCAAGGACTCAGGGTCAGAATGAATGGAGCCGCGAGAATGGTCGATTCGTATTTCCTGGATTTCCTTCGAGACATTTGGGACAATGGGGTTCAAAGAGGGCTTAGATTTAGACGCCCTGTTGCGCCTGACAATGAACCACAACGAAATGAAGAACAGAACGATAACAATAGCGGCACCCACGCAAATTCCCAGAGCGACCCACAAGCGCAAACCAAAAATGGAGATCCTCCTCGAGAGCTGATCGTTCAAGAACGCATAATTAGACATTTCCCCCTTCCTCCTCCTCCTTCTTCTACAGATGATATCTGA

mRNA sequence

ATGAAAGAAGAAGAAGAAGAACCTGTTATTGAGCAAGTTTTTGATGGCTACCACAGTGTTGTCCTCAAGAACACCACGGTACACAATTCCATATCCGCCTTCACCAATGACATGTTCATCCGCAAAGCCATTAGTAGAACACTCAAGCTCTCTGAGAGTATACCTATGTCCCCAACCCAAATGCGAAACCACCGACAACTGCTCACCGGACCGAACTTCTCCACTACCGTGACACGAACCGCCGTCCCTCTCCGGGAACGAAACCCGGCGGTCCTTCCCAATTTCAATGCGGGTTCTACGGCGTCCATTACCTGGGCTCCCTTGTTCCGTCTGAAGCTGTTCTGCCTCCGGCAAGGACTCAGGGTCAGAATGAATGGAGCCGCGAGAATGGTCGATTCGTATTTCCTGGATTTCCTTCGAGACATTTGGGACAATGGGGTTCAAAGAGGGCTTAGATTTAGACGCCCTGTTGCGCCTGACAATGAACCACAACGAAATGAAGAACAGAACGATAACAATAGCGGCACCCACGCAAATTCCCAGAGCGACCCACAAGCGCAAACCAAAAATGGAGATCCTCCTCGAGAGCTGATCGTTCAAGAACGCATAATTAGACATTTCCCCCTTCCTCCTCCTCCTTCTTCTACAGATGATATCTGA

Coding sequence (CDS)

ATGAAAGAAGAAGAAGAAGAACCTGTTATTGAGCAAGTTTTTGATGGCTACCACAGTGTTGTCCTCAAGAACACCACGGTACACAATTCCATATCCGCCTTCACCAATGACATGTTCATCCGCAAAGCCATTAGTAGAACACTCAAGCTCTCTGAGAGTATACCTATGTCCCCAACCCAAATGCGAAACCACCGACAACTGCTCACCGGACCGAACTTCTCCACTACCGTGACACGAACCGCCGTCCCTCTCCGGGAACGAAACCCGGCGGTCCTTCCCAATTTCAATGCGGGTTCTACGGCGTCCATTACCTGGGCTCCCTTGTTCCGTCTGAAGCTGTTCTGCCTCCGGCAAGGACTCAGGGTCAGAATGAATGGAGCCGCGAGAATGGTCGATTCGTATTTCCTGGATTTCCTTCGAGACATTTGGGACAATGGGGTTCAAAGAGGGCTTAGATTTAGACGCCCTGTTGCGCCTGACAATGAACCACAACGAAATGAAGAACAGAACGATAACAATAGCGGCACCCACGCAAATTCCCAGAGCGACCCACAAGCGCAAACCAAAAATGGAGATCCTCCTCGAGAGCTGATCGTTCAAGAACGCATAATTAGACATTTCCCCCTTCCTCCTCCTCCTTCTTCTACAGATGATATCTGA

Protein sequence

MKEEEEEPVIEQVFDGYHSVVLKNTTVHNSISAFTNDMFIRKAISRTLKLSESIPMSPTQMRNHRQLLTGPNFSTTVTRTAVPLRERNPAVLPNFNAGSTASITWAPLFRLKLFCLRQGLRVRMNGAARMVDSYFLDFLRDIWDNGVQRGLRFRRPVAPDNEPQRNEEQNDNNSGTHANSQSDPQAQTKNGDPPRELIVQERIIRHFPLPPPPSSTDDI
Homology
BLAST of Csor.00g051780 vs. NCBI nr
Match: KAG6585674.1 (hypothetical protein SDJN03_18407, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 441 bits (1135), Expect = 2.69e-156
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0

Query: 1   MKEEEEEPVIEQVFDGYHSVVLKNTTVHNSISAFTNDMFIRKAISRTLKLSESIPMSPTQ 60
           MKEEEEEPVIEQVFDGYHSVVLKNTTVHNSISAFTNDMFIRKAISRTLKLSESIPMSPTQ
Sbjct: 1   MKEEEEEPVIEQVFDGYHSVVLKNTTVHNSISAFTNDMFIRKAISRTLKLSESIPMSPTQ 60

Query: 61  MRNHRQLLTGPNFSTTVTRTAVPLRERNPAVLPNFNAGSTASITWAPLFRLKLFCLRQGL 120
           MRNHRQLLTGPNFSTTVTRTAVPLRERNPAVLPNFNAGSTASITWAPLFRLKLFCLRQGL
Sbjct: 61  MRNHRQLLTGPNFSTTVTRTAVPLRERNPAVLPNFNAGSTASITWAPLFRLKLFCLRQGL 120

Query: 121 RVRMNGAARMVDSYFLDFLRDIWDNGVQRGLRFRRPVAPDNEPQRNEEQNDNNSGTHANS 180
           RVRMNGAARMVDSYFLDFLRDIWDNGVQRGLRFRRPVAPDNEPQRNEEQNDNNSGTHANS
Sbjct: 121 RVRMNGAARMVDSYFLDFLRDIWDNGVQRGLRFRRPVAPDNEPQRNEEQNDNNSGTHANS 180

Query: 181 QSDPQAQTKNGDPPRELIVQERIIRHFPLPPPPSSTDDI 219
           QSDPQAQTKNGDPPRELIVQERIIRHFPLPPPPSSTDDI
Sbjct: 181 QSDPQAQTKNGDPPRELIVQERIIRHFPLPPPPSSTDDI 219

BLAST of Csor.00g051780 vs. NCBI nr
Match: GER29944.1 (arginine decarboxylase 2 [Striga asiatica])

HSP 1 Score: 76.6 bits (187), Expect = 4.62e-13
Identity = 61/173 (35.26%), Postives = 84/173 (48.55%), Query Frame = 0

Query: 9   VIEQVFDGYHSVVLKNTTVHNSISAFTNDMFIRKAISRTLKLSESIPMSPTQMRNHRQLL 68
           V+EQ+FD ++S++L+N  V+N I +F N + IRKAI   LKL + +P++P QMR+ R   
Sbjct: 11  VVEQIFDSHNSLILQNPMVNNPIPSFPNHILIRKAICGLLKLPQRVPVAPPQMRDLRPGN 70

Query: 69  TGPNFSTTV----TRTAVPLRERNPAVLPNFNAGSTASITWAPLFRLKLFCLR------Q 128
           +    +T      TRT + LR  NP  L N N  S        LFR+    L       Q
Sbjct: 71  SRIRLATLADRPGTRTRL-LRVGNPVPLSNLNVDSIV------LFRVGFRVLNRPRRGEQ 130

Query: 129 GLRVRMNGAARMVDSYFLDFLRDIWDNGV--------------QRGLRFRRPV 157
            LRV +  + R V   FL F RD  D G               QR +R R+P 
Sbjct: 131 ELRVGIRDSVR-VGPNFLYFSRDFRDGGALLGDEVLLFLLEVNQRQIRKRKPT 175

BLAST of Csor.00g051780 vs. NCBI nr
Match: RXH72226.1 (hypothetical protein DVH24_033764 [Malus domestica])

HSP 1 Score: 64.7 bits (156), Expect = 3.95e-09
Identity = 50/142 (35.21%), Postives = 79/142 (55.63%), Query Frame = 0

Query: 80  TAVPLRERNPAVLPNFNAGS--TASITWAPLFRLKLFCLRQGLR---VRMNG---AARMV 139
           TA  LR RN  V+ N N  S   A+ +WA +  + L   +QGL    VR+N     A ++
Sbjct: 6   TAALLRVRNLVVISNLNVNSLSAAAPSWAVMVIVLLE--KQGLGSGGVRVNSRVKVALVI 65

Query: 140 DSYFLDFLRDIWDNGVQ-----------RGLRFR--RPVAPDNEPQRNEEQNDNNSGTHA 199
           D + +     +W + ++           +GL F+    VA  +EP+R+EE+++NN G+ A
Sbjct: 66  DVFRVALRWVVWKSSIRISWISLETVVCKGLGFQGAAAVAAISEPKRDEEEDENNGGSDA 125

BLAST of Csor.00g051780 vs. ExPASy TrEMBL
Match: A0A2P2LKI0 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.34e-16
Identity = 57/157 (36.31%), Postives = 80/157 (50.96%), Query Frame = 0

Query: 8   PVIEQVFDGYHSVVLKNTTVHNSISAFTNDMFIRKAISRTLKLSESIPMSPTQMRNHR-- 67
           PV+EQ+F+    ++L+N TV++ ++AFTN + I K I   LKL ES+P++P QMRN R  
Sbjct: 35  PVVEQIFNSNFGIILQNATVNDPVAAFTNHILISKPIGGDLKLPESVPVAPPQMRNFRHR 94

Query: 68  ----QLLTG----PNFSTTVTRTAVPLRERNPAVLPNFNAGSTASITWAPLFRLKLFCLR 127
               +L+TG    P     +T++    R RNP   PN N  S +      L  +     R
Sbjct: 95  NGRNRLITGARARPVLPAAMTQSTGSFRVRNPMTFPNINVNSISPANRTGLLIMLQKRGR 154

Query: 128 QGL----RVR---MNGAARMVDSYFLDFLRDIWDNGV 147
            GL    RVR   +      V    LDFL +I D GV
Sbjct: 155 LGLCDWVRVRHFCIRSRVGRVYQDLLDFLGNIRDRGV 191

BLAST of Csor.00g051780 vs. ExPASy TrEMBL
Match: A0A5A7PBF8 (Arginine decarboxylase 2 OS=Striga asiatica OX=4170 GN=STAS_05843 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.24e-13
Identity = 61/173 (35.26%), Postives = 84/173 (48.55%), Query Frame = 0

Query: 9   VIEQVFDGYHSVVLKNTTVHNSISAFTNDMFIRKAISRTLKLSESIPMSPTQMRNHRQLL 68
           V+EQ+FD ++S++L+N  V+N I +F N + IRKAI   LKL + +P++P QMR+ R   
Sbjct: 11  VVEQIFDSHNSLILQNPMVNNPIPSFPNHILIRKAICGLLKLPQRVPVAPPQMRDLRPGN 70

Query: 69  TGPNFSTTV----TRTAVPLRERNPAVLPNFNAGSTASITWAPLFRLKLFCLR------Q 128
           +    +T      TRT + LR  NP  L N N  S        LFR+    L       Q
Sbjct: 71  SRIRLATLADRPGTRTRL-LRVGNPVPLSNLNVDSIV------LFRVGFRVLNRPRRGEQ 130

Query: 129 GLRVRMNGAARMVDSYFLDFLRDIWDNGV--------------QRGLRFRRPV 157
            LRV +  + R V   FL F RD  D G               QR +R R+P 
Sbjct: 131 ELRVGIRDSVR-VGPNFLYFSRDFRDGGALLGDEVLLFLLEVNQRQIRKRKPT 175

BLAST of Csor.00g051780 vs. ExPASy TrEMBL
Match: A0A7C9CLH3 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.36e-11
Identity = 47/139 (33.81%), Postives = 70/139 (50.36%), Query Frame = 0

Query: 8   PVIEQVFDGYHSVVLKNTTVHNSISAFTNDMFIRKAISRTLKLSESIPMSPTQMRNHRQL 67
           PVI+++FDG H ++ +N T++N+I+ F+N + IR+ I R  +LS+ IP SP Q+R+ R  
Sbjct: 35  PVIQEIFDGNHRIIPQNPTINNAIATFSNHILIRQEIGRQFQLSQCIPPSPPQVRHLR-- 94

Query: 68  LTGPNFSTTVTRTAVPLRERNPAVLPNFNAGSTASITWA--PLFRLKLFCLRQGLRVRMN 127
                          P+R R   ++      ST        P+ RL  F L   +R   N
Sbjct: 95  --------------TPIRRRIAPIITTVRPYSTLPTVGEHHPVLRLSYFDL--DIRRGGN 154

Query: 128 GAARMV-----DSYFLDFL 139
           GAA +V     D   LDFL
Sbjct: 155 GAAGVVVDGGDDLNLLDFL 155

BLAST of Csor.00g051780 vs. ExPASy TrEMBL
Match: A0A498HL69 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_033764 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.91e-09
Identity = 50/142 (35.21%), Postives = 79/142 (55.63%), Query Frame = 0

Query: 80  TAVPLRERNPAVLPNFNAGS--TASITWAPLFRLKLFCLRQGLR---VRMNG---AARMV 139
           TA  LR RN  V+ N N  S   A+ +WA +  + L   +QGL    VR+N     A ++
Sbjct: 6   TAALLRVRNLVVISNLNVNSLSAAAPSWAVMVIVLLE--KQGLGSGGVRVNSRVKVALVI 65

Query: 140 DSYFLDFLRDIWDNGVQ-----------RGLRFR--RPVAPDNEPQRNEEQNDNNSGTHA 199
           D + +     +W + ++           +GL F+    VA  +EP+R+EE+++NN G+ A
Sbjct: 66  DVFRVALRWVVWKSSIRISWISLETVVCKGLGFQGAAAVAAISEPKRDEEEDENNGGSDA 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6585674.12.69e-156100.00hypothetical protein SDJN03_18407, partial [Cucurbita argyrosperma subsp. sorori... [more]
GER29944.14.62e-1335.26arginine decarboxylase 2 [Striga asiatica][more]
RXH72226.13.95e-0935.21hypothetical protein DVH24_033764 [Malus domestica][more]
Match NameE-valueIdentityDescription
A0A2P2LKI01.34e-1636.31Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
A0A5A7PBF82.24e-1335.26Arginine decarboxylase 2 OS=Striga asiatica OX=4170 GN=STAS_05843 PE=4 SV=1[more]
A0A7C9CLH35.36e-1133.81Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A498HL691.91e-0935.21Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_033764 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..219
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..189

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g051780.m01Csor.00g051780.m01mRNA