Csor.00g045740 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g045740
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptioncoiled-coil domain-containing protein 12-like
LocationCsor_Chr18: 581404 .. 584602 (-)
RNA-Seq ExpressionCsor.00g045740
SyntenyCsor.00g045740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACTGAAGAAGACTCCGTCGAACAAGTTGCTGCAGCACGTCAAGAGAGATTGAGAGCTCTAAGAGCTGCTCAGGAACTGTTAAACGCTCCAGATGAGAAAACTTCTGGAGGAGAGGATCAAGAGAATGGCGCTGCCGCAGATACCGAAGAAATGTGAGTGTGTATCGTTTTTCTTCCACCAAAGATTAACTGCTGTACTAGAAGTTACTTTTTCTAGAAGTTTTTTGTTTCAATTTCTCGAGTAAGTCGAATACTAGTAATGATTATATTGCTGAAATTTTGAAATGTTTTTCTTCTATTCGTGGATCACTTTACTTGTAAGCAGGTTTGTATAGTACAGGTAGCTTCAATTTGATTTCTCTGACTGTAATATCCTCTCTATCCTCCTTTAGTTGTGCTTTTAAAGATCCAACCTATGATATCCCCTCTAACCTCCTTTAGTTGTGCTTTAAAAGATCCAATCTATGATATCCTCTTCAAATGTAGGTTCCTAAACTATATTTCTACTCCTTTACGATCTATAGATAAAAATCTTCAAGAATACAGAAACGTGAAGGGAATTGAGAAAGTTTATGCACAATAATCCATTTAGGCTACATCAGTCTATAGAAAAAGTTCTATTACTCATAGCTCCTTGAGACTGAGACTCCACAAAACAAATATTCCATAGAAAATAACACTGTGGAGGAGATGAAGAGGAGAAAATAGTAGATCTCATCATACTTACCCACTCTGAATGTCTGTCTCCTCATAGGAATGGCGATGTCCTTCTTCCTCTGCCTTTAACCACCCTCATTTATCTTTATGCTTATTGCCTGACCTTTTTACTTCCTATCTTAACCTCTCTCACTCCCTTTCTCTTCCTCTTTCTTTAGCCGCCCCTTTTATCTCTGTGTCCATCGTTTGACTATCTCTTTTTTTTTTTCGTTTATTTTATGGTGGAGTCTGTGCTGAATTTACATGCTAACATAGTGAGCCAAGTTCCTCTATAATCTGGCCTGGGACATGTTACACAGACAACTTGCATGCTGTGTGATCAGTGTGCCAAGCTCTCTAGAGCTTGATTTGGGACTTATTACAATTGACAGCCTTAGTAGTAGTATCTGCATTACTGTGGCAGCAACGACAAAAGATTTTTTCCTTTCTTTAGTAAGTTTTGTTTTTCTGTTTGTAGACTAGAGTCATAAACGGCCACAATAGGTCCTTTTAGAAACTAAGCTGCAAATTTATGTTAACATGATGCATGTGAAGCATGTTCATAGAAGTATCCTCCCATCAATGAGATTTCTTTCAGTCTTTCTTTTTAATTATTTCTTTCGTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTGTGTGTGTGTGTGTATAACATTTGTGCTTGTAGAGTTTAGGATGATGATAATGTGATGTGAATGATGGCGACATACAGCATAACTAAGCTTTTTTTATCTTTTAGGATATATTTGGTGGTTACCTTCGAAATGTTTCAATATGATTTGTCCCTTGCAAGGGGAAAATGTTTCAATATGATTTGTCCCTTGCAAGGGGAAAATGTGTTACTATATAAATGACGTTCTTTTGCACATTGAATATCTGTTTAGTTTGATGTCATTTTCAACTCATTTGAAAAATTGGCGTTTTTTTTTTTCTTTTTCTTGATTCACTATGACATTATCCTTTCTCAGTAATCTTGGTATGAAATTCCGGAACTATGTTCCTCATGATAAGGAGCTACAGGAGGGTAAGCTTGCCCCGCCTGTATTGCCTAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGTAATTTTGTCAGTTTGACTTATGTGTGTGTGTGTGTGTTTAAACTGGACTATTTTTGGATATTAATCTGTTAACTAAATTTTATCGGCAAAATTATAGGACCCATTTGTGAATATTGCTCCAAAAAAACCAAACTGGGACCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGGTGAGTAGAAATATTTGATTTGCGGTCTATGCGAACTTGATAAGTCACTTTTCTATTCTCGTTCTTTTACTTGCTTCATTTGGTAGTAGTGTAACTGGACTTAACAAATTGAAATTTATTTGCTTTGTTTGTCTGATATCTACAGTCAATTAGCATATAGATTAAAGAATTATTGCATGAAATAAAATATATTCTTGGAGTTATTTTAATTCTGTAAGGTTAATTTAGAGTATTTGGTCTGCAGACGCTTCTTACAATTTTCTTTTTTGTATTTGGTCATCAGTTGTGGGTCTTACGATTTACGAGTCGTCAATCTCAGTTTTGGCATGAAGTTGGGGTATCGAGGGAAGTGGTGGTGCTTGGAGTAGAATGGAGCCAGTTTAAACCATAACCCTCTAATCTTGAACATTATATATACTGATTAACTCATGAAGATATTGAAAGCTATAGCAAAGATTGTGACATCTTTTAGTTGGCCGATAGCGTATTTATTTAATTATTTTCAAAAGAACATTATATCACAAATATAAGGTAAAGGATTTGAAACTAAATCTTTAATAGACATGTCTTATACACTTGGTTATGTTCAAATCGATGCAGGATACCCTTATTACAAGACTAATTATCATAATGAATCATAAAAATGGTAGAAAGTTATGTGGAACTCCGTGCTTGCTTGGCCTTATGAACTCTCTTCCTGTTTAATTTTTGGTAGAGGAACAGGAAAAGCAGAAGCAGTCAGCTGAAGGAGATGATGACCAAAATGATACAGAGGGATAGTATGCCACACAAATCTTGAGCTCTCAAATATTACAGTCCGAAATGCTATGAAAAGTATATCATTGAAGAAAACTGGGCGTTACTTGGCTCATAGGGTCAGTTTTTCTGTGACCTTTTCTTTATCATTCTTGGCTGCAAATCTTTAGTTTATCTATTGTTTGCTTATGTAGTGTCCATTTGAGTAATTTACGCCCCTTAGTGTATCTCGTACTGGATACTGATCTGTAATTTATCTACACTGCCTTATAAGTTATAACTTTGTGTTTCACTTATTATTTATCAACATTATATGCTGTTTTTGGCACATTAACTTTGCATATGATTTCAGTCAGACGTTTGCAAACGTTTCATGGTTCGTTGCATACGTTGTGTTGGGGCAGTAA

mRNA sequence

ATGGCAACTGAAGAAGACTCCGTCGAACAAGTTGCTGCAGCACGTCAAGAGAGATTGAGAGCTCTAAGAGCTGCTCAGGAACTGTTAAACGCTCCAGATGAGAAAACTTCTGGAGGAGAGGATCAAGAGAATGGCGCTGCCGCAGATACCGAAGAAATTAATCTTGGTATGAAATTCCGGAACTATGTTCCTCATGATAAGGAGCTACAGGAGGGTAAGCTTGCCCCGCCTGTATTGCCTAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGACCCATTTGTGAATATTGCTCCAAAAAAACCAAACTGGGACCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGAGGAACAGGAAAAGCAGAAGCAGTCAGCTGAAGGAGATGATGACCAAAATGATACAGAGGGATATCAGACGTTTGCAAACGTTTCATGGTTCGTTGCATACGTTGTGTTGGGGCAGTAA

Coding sequence (CDS)

ATGGCAACTGAAGAAGACTCCGTCGAACAAGTTGCTGCAGCACGTCAAGAGAGATTGAGAGCTCTAAGAGCTGCTCAGGAACTGTTAAACGCTCCAGATGAGAAAACTTCTGGAGGAGAGGATCAAGAGAATGGCGCTGCCGCAGATACCGAAGAAATTAATCTTGGTATGAAATTCCGGAACTATGTTCCTCATGATAAGGAGCTACAGGAGGGTAAGCTTGCCCCGCCTGTATTGCCTAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGACCCATTTGTGAATATTGCTCCAAAAAAACCAAACTGGGACCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGAGGAACAGGAAAAGCAGAAGCAGTCAGCTGAAGGAGATGATGACCAAAATGATACAGAGGGATATCAGACGTTTGCAAACGTTTCATGGTTCGTTGCATACGTTGTGTTGGGGCAGTAA

Protein sequence

MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEGYQTFANVSWFVAYVVLGQ
Homology
[Close]
BLAST of Csor.00g045740 vs. ExPASy Swiss-Prot
Match: Q8R344 (Coiled-coil domain-containing protein 12 OS=Mus musculus OX=10090 GN=Ccdc12 PE=1 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 54/144 (37.50%), Postives = 86/144 (59.72%), Query Frame = 0 

Query: 8   VEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEI--NLGMKFRNYVPH 67
           +E+ A  R+ERL+ALR      +  D     GE Q      + EE+  + G++ RNYVP 
Sbjct: 11  LEEEALRRKERLKALREKTGRKDRED-----GEPQTKQLREEGEEVGKHRGLRLRNYVPE 70

Query: 68  DKELQEGKL--APPVL----PKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLD 127
           D++L+  ++  A PV      K +   A   P ++E    N+AP+KP+WDL+RDV KKL+
Sbjct: 71  DEDLKRRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRDVAKKLE 130

Query: 128 KLERRTQKALYKLMEEQEKQKQSA 144
           KLE+RTQ+A+ +L+ E+ K ++ +
Sbjct: 131 KLEKRTQRAIAELIRERLKGQEDS 149

[Close]
BLAST of Csor.00g045740 vs. ExPASy Swiss-Prot
Match: Q8WUD4 (Coiled-coil domain-containing protein 12 OS=Homo sapiens OX=9606 GN=CCDC12 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.8e-11
Identity = 54/150 (36.00%), Postives = 89/150 (59.33%), Query Frame = 0 

Query: 8   VEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENG--------AAADTEEINLGMKF 67
           +E+ A  R+ERL+ALR          EKT G +D+E+G           +  E +  ++ 
Sbjct: 11  LEEEALRRKERLKALR----------EKT-GRKDKEDGEPKTKHLREEEEEGEKHRELRL 70

Query: 68  RNYVPHDKELQEGKL--APPVL----PKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRD 127
           RNYVP D++L++ ++  A PV      K +   A   P ++E    N+AP+KP+WDL+RD
Sbjct: 71  RNYVPEDEDLKKRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRD 130

Query: 128 VQKKLDKLERRTQKALYKLMEEQEKQKQSA 144
           V KKL+KL++RTQ+A+ +L+ E+ K ++ +
Sbjct: 131 VAKKLEKLKKRTQRAIAELIRERLKGQEDS 149

[Close]
BLAST of Csor.00g045740 vs. NCBI nr
Match: KAG6572999.1 (Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 329 bits (844), Expect = 1.75e-113
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0 

Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60
           MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEGYQTFANVSWFVAYVVLGQ 172
           LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEGYQTFANVSWFVAYVVLGQ
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEGYQTFANVSWFVAYVVLGQ 172

[Close]
BLAST of Csor.00g045740 vs. NCBI nr
Match: XP_022955111.1 (coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955112.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955113.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955114.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata])

HSP 1 Score: 293 bits (749), Expect = 2.86e-99
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0 

Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60
           MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEG 154
           LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEG
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEG 154

[Close]
BLAST of Csor.00g045740 vs. NCBI nr
Match: XP_023542240.1 (coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542241.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542242.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542243.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 289 bits (740), Expect = 6.74e-98
Identity = 152/154 (98.70%), Postives = 153/154 (99.35%), Query Frame = 0 

Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60
           MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGED+ENGAAADTEE NLGMKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDKENGAAADTEETNLGMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEG 154
           LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEG
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEG 154

[Close]
BLAST of Csor.00g045740 vs. NCBI nr
Match: XP_022994277.1 (coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_022994278.1 coiled-coil domain-containing protein 12-like isoform X2 [Cucurbita maxima] >XP_022994279.1 coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_022994280.1 coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_022994281.1 coiled-coil domain-containing protein 12-like isoform X2 [Cucurbita maxima] >XP_022994282.1 coiled-coil domain-containing protein 12-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 285 bits (729), Expect = 3.20e-96
Identity = 150/154 (97.40%), Postives = 150/154 (97.40%), Query Frame = 0 

Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60
           MATEEDSVEQVAAARQERLRALR AQELLNAPDEKTSGGEDQENG AADTEE NLGMKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEG 154
           LERRTQKALYKLMEEQEKQKQSAEGDDDQN TEG
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEG 154

[Close]
BLAST of Csor.00g045740 vs. NCBI nr
Match: XP_038894163.1 (coiled-coil domain-containing protein 12 [Benincasa hispida])

HSP 1 Score: 268 bits (684), Expect = 2.31e-89
Identity = 142/154 (92.21%), Postives = 144/154 (93.51%), Query Frame = 0 

Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60
           MATEEDSVEQVAAAR+ERLRALRAAQELLNA DEK SGGED+ENGA AD EE NL MKFR
Sbjct: 1   MATEEDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATADAEETNLNMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPV TEP QLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPAQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEG 154
           LERRTQKALYKLMEEQEKQKQSAEGDDDQN  EG
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNGAEG 154

[Close]
BLAST of Csor.00g045740 vs. ExPASy TrEMBL
Match: A0A6J1GST8 (coiled-coil domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111457177 PE=4 SV=1)

HSP 1 Score: 293 bits (749), Expect = 1.39e-99
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0 

Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60
           MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEG 154
           LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEG
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEG 154

[Close]
BLAST of Csor.00g045740 vs. ExPASy TrEMBL
Match: A0A6J1JYP1 (coiled-coil domain-containing protein 12-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490058 PE=4 SV=1)

HSP 1 Score: 285 bits (729), Expect = 1.55e-96
Identity = 150/154 (97.40%), Postives = 150/154 (97.40%), Query Frame = 0 

Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60
           MATEEDSVEQVAAARQERLRALR AQELLNAPDEKTSGGEDQENG AADTEE NLGMKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEG 154
           LERRTQKALYKLMEEQEKQKQSAEGDDDQN TEG
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEG 154

[Close]
BLAST of Csor.00g045740 vs. ExPASy TrEMBL
Match: A0A6J1DLK0 (coiled-coil domain-containing protein 12 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022269 PE=4 SV=1)

HSP 1 Score: 266 bits (681), Expect = 3.21e-89
Identity = 140/154 (90.91%), Postives = 145/154 (94.16%), Query Frame = 0 

Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60
           MATEEDSVEQVAAAR+ERLRALRAAQELLN PDEKTSGGED++NG   DTEE NL MKFR
Sbjct: 1   MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVA EPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEG 154
           LERRTQKALYKLM+EQEKQK+SAEGDD QN TEG
Sbjct: 121 LERRTQKALYKLMKEQEKQKESAEGDDVQNGTEG 154

[Close]
BLAST of Csor.00g045740 vs. ExPASy TrEMBL
Match: A0A1S3ATB1 (coiled-coil domain-containing protein 12 OS=Cucumis melo OX=3656 GN=LOC103482658 PE=4 SV=1)

HSP 1 Score: 259 bits (662), Expect = 2.44e-86
Identity = 137/153 (89.54%), Postives = 142/153 (92.81%), Query Frame = 0 

Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60
           MATEEDS EQVAAAR+ERL+ALRAAQELLNA DEK S GED+ENGA ADT+E NL MKFR
Sbjct: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPV TEPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTE 153
           LERRTQKALYKLMEEQEKQKQ+AEGDDDQN  E
Sbjct: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 153

[Close]
BLAST of Csor.00g045740 vs. ExPASy TrEMBL
Match: A0A5D3BJ95 (Coiled-coil domain-containing protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002830 PE=4 SV=1)

HSP 1 Score: 259 bits (662), Expect = 2.44e-86
Identity = 137/153 (89.54%), Postives = 142/153 (92.81%), Query Frame = 0 

Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60
           MATEEDS EQVAAAR+ERL+ALRAAQELLNA DEK S GED+ENGA ADT+E NL MKFR
Sbjct: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPV TEPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTE 153
           LERRTQKALYKLMEEQEKQKQ+AEGDDDQN  E
Sbjct: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 153

[Close]
BLAST of Csor.00g045740 vs. TAIR 10
Match: AT3G05070.1 (CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink). )

HSP 1 Score: 173.7 bits (439), Expect = 1.3e-43
Identity = 98/148 (66.22%), Postives = 114/148 (77.03%), Query Frame = 0 

Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60
           MA+E++S+EQ AAAR+E L+ALRAAQEL           E +E+G     EE    MKFR
Sbjct: 1   MASEDESIEQKAAARKEALKALRAAQEL----------SETKEDGEDEAVEEDGPAMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKL 120
           NYVP  KELQ+GKLAPP LPKFEDP+   PP  + KEDPFVNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPQAKELQDGKLAPPELPKFEDPIVALPPAVEKKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 121 DKLERRTQKALYKLMEEQEKQKQSAEGD 147
           DKLERRTQKA++KLMEEQEK+++ AE D
Sbjct: 121 DKLERRTQKAMHKLMEEQEKEREMAEAD 138

The following BLAST results are available for this feature:
BLAST of Csor.00g045740 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8R3441.1e-1237.50Coiled-coil domain-containing protein 12 OS=Mus musculus OX=10090 GN=Ccdc12 PE=1... [more]
Q8WUD44.8e-1136.00Coiled-coil domain-containing protein 12 OS=Homo sapiens OX=9606 GN=CCDC12 PE=1 ... [more]
BLAST of Csor.00g045740 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6572999.11.75e-113100.00Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp.... [more]
XP_022955111.12.86e-99100.00coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955112... [more]
XP_023542240.16.74e-9898.70coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_0... [more]
XP_022994277.13.20e-9697.40coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_... [more]
XP_038894163.12.31e-8992.21coiled-coil domain-containing protein 12 [Benincasa hispida][more]
BLAST of Csor.00g045740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GST81.39e-99100.00coiled-coil domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1JYP11.55e-9697.40coiled-coil domain-containing protein 12-like isoform X1 OS=Cucurbita maxima OX=... [more]
A0A6J1DLK03.21e-8990.91coiled-coil domain-containing protein 12 isoform X1 OS=Momordica charantia OX=36... [more]
A0A1S3ATB12.44e-8689.54coiled-coil domain-containing protein 12 OS=Cucumis melo OX=3656 GN=LOC103482658... [more]
A0A5D3BJ952.44e-8689.54Coiled-coil domain-containing protein 12 OS=Cucumis melo var. makuwa OX=1194695 ... [more]
BLAST of Csor.00g045740 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G05070.11.3e-4366.22CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Ha... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 111..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..153
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..100
IPR013169mRNA splicing factor Cwf18-likePFAMPF08315cwf18coord: 8..135
e-value: 3.5E-34
score: 118.4
IPR013169mRNA splicing factor Cwf18-likePANTHERPTHR31551PRE-MRNA-SPLICING FACTOR CWF18coord: 1..145

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g045740.m01Csor.00g045740.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0071014 post-mRNA release spliceosomal complex
cellular_component GO:0005684 U2-type spliceosomal complex