Csor.00g041610 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g041610
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr07: 5480895 .. 5481994 (-)
RNA-Seq Expression	Csor.00g041610
Synteny	Csor.00g041610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAACGACGACATTGTATTCTTAATGGCTCCGATAATGATTATGGTATTTTCGTTTGGCGGTTTTAGTCTTTTCGTAGTAACTTTGTGCTGTAAATGGAGAGAATTGCAAAAGATGAACAACGGAGGTGCCGTTTATGGCGGCGGCGCCGGAAAAATTATCATAGTGGTTGACCAAAATGGAAATCCTATTGGTGGAACCAACTTCCCAGCTGGATGTGGCAACGTCGGCTCCTTAAACATCGGTGGCGAGTTTCGGTACGATAGGATATATGGCGGAGGACCGGAGGTGGTGGTACCGACGGTGGGGGAGGTTATGAAATGTCAATCTTGTAGTTCTTGCGGCTGCACCCACGGTGGCTCTGCTGGTTACTGATCATGATGTTTATTTAGTTTCATTTACATGTCAATGTTGAAGCTTAATAGTGAATTGATAATTATGTAAGGCTTTGAGCTTAGTGCAATTTAGTTATGAGCACTTCTTTGAATTAATATGTTATTGATAATTATGCATGATAGCAAGAATTAAAGAAATGGAATCCGTTAGGTTGTAGCTATTTCGACTCATTAATCTTATCGATCTACAAAACACCATAAGATAGTATTCTTCGAGTTTGCTGGTGCATAATTACCAGTGTGTTGGATGAAAGTCCCACCTTGGCTAATTTAGGGAATGATCATGAGTTATAATAAAAAAAAATACTATCTCTATTGGTACCAGGTCTTTTGGGGATACCCAAAACAAAGTCACGAGAGCTTATGTTCAAAGTGGACAATATCATACCATTATGGAGAGTCATATTCATCTAACACCGTGCACCCTTCATGGTAGTGAGCATCGTCACGGTTGTTGAAAGCAAACGAGTAAGCACTCATTCTTCCACATTGTGTGGGAAGATCCAAAAAAAGAAAAAAATTGTGGGGTTTGGTTTCTCATAAAATGGTTGTGTAGGGGTCGATTCCGTGGATTCAGTCACCCAAGAGACGGTCGCCGGAGGAGCTGTGGGTGGTGAAGGAAACATGCAATCATCGAAAGTAAAACTTAGGCATAAGAAGAAAATCGGGCGAAGAAGACAAGGTTCACTAGTCGAAAGTTGA

mRNA sequence

ATGGATAACGACGACATTGTATTCTTAATGGCTCCGATAATGATTATGGTATTTTCGTTTGGCGGTTTTAGTCTTTTCGTAGTAACTTTGTGCTGTAAATGGAGAGAATTGCAAAAGATGAACAACGGAGGTGCCGTTTATGGCGGCGGCGCCGGAAAAATTATCATAGTGGTTGACCAAAATGGAAATCCTATTGGTGGAACCAACTTCCCAGCTGGATGTGGCAACGTCGGCTCCTTAAACATCGGTGGCGAGTTTCGGTACGATAGGATATATGGCGGAGGACCGGAGGTGGTGGTACCGACGGTGGGGGAGGTTATGAAATGTCAATCTTGTAGTTCTTGCGGCTGCACCCACGGTGGCTCTGCTGGGGTCGATTCCGTGGATTCAGTCACCCAAGAGACGGTCGCCGGAGGAGCTGTGGGTGGTGAAGGAAACATGCAATCATCGAAAGTAAAACTTAGGCATAAGAAGAAAATCGGGCGAAGAAGACAAGGTTCACTAGTCGAAAGTTGA

Coding sequence (CDS)

ATGGATAACGACGACATTGTATTCTTAATGGCTCCGATAATGATTATGGTATTTTCGTTTGGCGGTTTTAGTCTTTTCGTAGTAACTTTGTGCTGTAAATGGAGAGAATTGCAAAAGATGAACAACGGAGGTGCCGTTTATGGCGGCGGCGCCGGAAAAATTATCATAGTGGTTGACCAAAATGGAAATCCTATTGGTGGAACCAACTTCCCAGCTGGATGTGGCAACGTCGGCTCCTTAAACATCGGTGGCGAGTTTCGGTACGATAGGATATATGGCGGAGGACCGGAGGTGGTGGTACCGACGGTGGGGGAGGTTATGAAATGTCAATCTTGTAGTTCTTGCGGCTGCACCCACGGTGGCTCTGCTGGGGTCGATTCCGTGGATTCAGTCACCCAAGAGACGGTCGCCGGAGGAGCTGTGGGTGGTGAAGGAAACATGCAATCATCGAAAGTAAAACTTAGGCATAAGAAGAAAATCGGGCGAAGAAGACAAGGTTCACTAGTCGAAAGTTGA

Protein sequence

MDNDDIVFLMAPIMIMVFSFGGFSLFVVTLCCKWRELQKMNNGGAVYGGGAGKIIIVVDQNGNPIGGTNFPAGCGNVGSLNIGGEFRYDRIYGGGPEVVVPTVGEVMKCQSCSSCGCTHGGSAGVDSVDSVTQETVAGGAVGGEGNMQSSKVKLRHKKKIGRRRQGSLVES

Homology

[Close]

BLAST of Csor.00g041610 vs. NCBI nr
Match: KAG6595346.1 (hypothetical protein SDJN03_11899, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 343 bits (879), Expect = 7.45e-119
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MDNDDIVFLMAPIMIMVFSFGGFSLFVVTLCCKWRELQKMNNGGAVYGGGAGKIIIVVDQ 60
           MDNDDIVFLMAPIMIMVFSFGGFSLFVVTLCCKWRELQKMNNGGAVYGGGAGKIIIVVDQ
Sbjct: 1   MDNDDIVFLMAPIMIMVFSFGGFSLFVVTLCCKWRELQKMNNGGAVYGGGAGKIIIVVDQ 60

Query: 61  NGNPIGGTNFPAGCGNVGSLNIGGEFRYDRIYGGGPEVVVPTVGEVMKCQSCSSCGCTHG 120
           NGNPIGGTNFPAGCGNVGSLNIGGEFRYDRIYGGGPEVVVPTVGEVMKCQSCSSCGCTHG
Sbjct: 61  NGNPIGGTNFPAGCGNVGSLNIGGEFRYDRIYGGGPEVVVPTVGEVMKCQSCSSCGCTHG 120

Query: 121 GSAGVDSVDSVTQETVAGGAVGGEGNMQSSKVKLRHKKKIGRRRQGSLVES 171
           GSAGVDSVDSVTQETVAGGAVGGEGNMQSSKVKLRHKKKIGRRRQGSLVES
Sbjct: 121 GSAGVDSVDSVTQETVAGGAVGGEGNMQSSKVKLRHKKKIGRRRQGSLVES 171

The following BLAST results are available for this feature:

BLAST of Csor.00g041610 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g041610 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595346.1	7.45e-119	100.00	hypothetical protein SDJN03_11899, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g041610 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g041610 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g041610.m01	Csor.00g041610.m01	mRNA