Csor.00g040580 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g040580
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr02: 6140846 .. 6141127 (-)
RNA-Seq ExpressionCsor.00g040580
SyntenyCsor.00g040580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAAAACTCATATAACATCTGCGAATATCAAGCCTAGAAGACACTTGACGGATAGAGAAATTGAGGATTGGGCTTGCCTTAATGAGGATCCTGAGGTGGTTATTCCAAATTATTCTTTGGATATGTGGCGCTGGAATTTGGAGAGGCAAAGAGCTTTTTCATCAAAATCTCATAATAATGCTCTTCTTCAAGAGGAGGTTCTGCTTACAAGGACCTATACCCTTCGGCTGGGAAAGGACATCATCCCAAAAAGGTTTAGTTTTTCAGTTCAGAACTGA

mRNA sequence

ATGTGGAAAACTCATATAACATCTGCGAATATCAAGCCTAGAAGACACTTGACGGATAGAGAAATTGAGGATTGGGCTTGCCTTAATGAGGATCCTGAGGTGGTTATTCCAAATTATTCTTTGGATATGTGGCGCTGGAATTTGGAGAGGCAAAGAGCTTTTTCATCAAAATCTCATAATAATGCTCTTCTTCAAGAGGAGGTTCTGCTTACAAGGACCTATACCCTTCGGCTGGGAAAGGACATCATCCCAAAAAGGTTTAGTTTTTCAGTTCAGAACTGA

Coding sequence (CDS)

ATGTGGAAAACTCATATAACATCTGCGAATATCAAGCCTAGAAGACACTTGACGGATAGAGAAATTGAGGATTGGGCTTGCCTTAATGAGGATCCTGAGGTGGTTATTCCAAATTATTCTTTGGATATGTGGCGCTGGAATTTGGAGAGGCAAAGAGCTTTTTCATCAAAATCTCATAATAATGCTCTTCTTCAAGAGGAGGTTCTGCTTACAAGGACCTATACCCTTCGGCTGGGAAAGGACATCATCCCAAAAAGGTTTAGTTTTTCAGTTCAGAACTGA

Protein sequence

MWKTHITSANIKPRRHLTDREIEDWACLNEDPEVVIPNYSLDMWRWNLERQRAFSSKSHNNALLQEEVLLTRTYTLRLGKDIIPKRFSFSVQN
Homology
BLAST of Csor.00g040580 vs. NCBI nr
Match: KAG6605644.1 (hypothetical protein SDJN03_02961, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199 bits (506), Expect = 1.74e-64
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0

Query: 1  MWKTHITSANIKPRRHLTDREIEDWACLNEDPEVVIPNYSLDMWRWNLERQRAFSSKSHN 60
          MWKTHITSANIKPRRHLTDREIEDWACLNEDPEVVIPNYSLDMWRWNLERQRAFSSKSHN
Sbjct: 1  MWKTHITSANIKPRRHLTDREIEDWACLNEDPEVVIPNYSLDMWRWNLERQRAFSSKSHN 60

Query: 61 NALLQEEVLLTRTYTLRLGKDIIPKRFSFSVQN 93
          NALLQEEVLLTRTYTLRLGKDIIPKRFSFSVQN
Sbjct: 61 NALLQEEVLLTRTYTLRLGKDIIPKRFSFSVQN 93

BLAST of Csor.00g040580 vs. NCBI nr
Match: KAA0035255.1 (choline-phosphate cytidylyltransferase [Cucumis melo var. makuwa] >TYK07580.1 choline-phosphate cytidylyltransferase [Cucumis melo var. makuwa])

HSP 1 Score: 51.6 bits (122), Expect = 1.14e-05
Identity = 33/97 (34.02%), Postives = 40/97 (41.24%), Query Frame = 0

Query: 1  MWKTHITSA-----------NIKPRRHLTDREIEDWACLNEDPEVVIPNYSLDMWRWNLE 60
          MW T IT             NI  RR+L + E EDW  L +    V P  S D W WNL+
Sbjct: 1  MWGTEITPPFGMIVGLDRGWNISYRRNLQEGEFEDWLALMDLLSTVTPTTSRDKWTWNLD 60

Query: 61 RQRAFSSKSHNNALLQEEVLLTRTYTLRLGKDIIPKR 86
          +   FSSKS    L         +    +  D  PKR
Sbjct: 61 KNGNFSSKSLATDLDTNGQETNSSLFNAIWTDFYPKR 97

BLAST of Csor.00g040580 vs. ExPASy TrEMBL
Match: A0A5A7T1C2 (Choline-phosphate cytidylyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold852G00180 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.51e-06
Identity = 33/97 (34.02%), Postives = 40/97 (41.24%), Query Frame = 0

Query: 1  MWKTHITSA-----------NIKPRRHLTDREIEDWACLNEDPEVVIPNYSLDMWRWNLE 60
          MW T IT             NI  RR+L + E EDW  L +    V P  S D W WNL+
Sbjct: 1  MWGTEITPPFGMIVGLDRGWNISYRRNLQEGEFEDWLALMDLLSTVTPTTSRDKWTWNLD 60

Query: 61 RQRAFSSKSHNNALLQEEVLLTRTYTLRLGKDIIPKR 86
          +   FSSKS    L         +    +  D  PKR
Sbjct: 61 KNGNFSSKSLATDLDTNGQETNSSLFNAIWTDFYPKR 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6605644.11.74e-64100.00hypothetical protein SDJN03_02961, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0035255.11.14e-0534.02choline-phosphate cytidylyltransferase [Cucumis melo var. makuwa] >TYK07580.1 ch... [more]
Match NameE-valueIdentityDescription
A0A5A7T1C25.51e-0634.02Choline-phosphate cytidylyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g040580.m01Csor.00g040580.m01mRNA