Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGGTGCGGACTTTTTGAGTCTGACTTCACCAACCCGGTCACCCATTATAAATCAACAAACTACTGCACGTTTTGTTACCCAAATCATGATGGAGCTTGAAGCAGAGATGAGGGATTTGGAGTGTCGTGCTGAAAATCAGCAACAAAGGGTGCGTTACTACGAGAGTATAGCCATTTACACCATTCTGGCTTACATTACCAGCCTGCGCTTCTTCTACTCTGCTGTCTCCTCCCCTGCTTCCTCCACCCTCCACTGTGTTCATTGGCCCCTGGTTTCGGCTCTCACTCTTTCCTGCTCATTCCTCTACTTCTTCATCCTGCTGCCGGTTTTCATTAAATTGTACCGCACTCACAACCTGCTCGACATAATTTGCAAGGAACATGCTGACATCTATCAACGGATCTTGAACGGTAGGAGCCAACATGGTGGGGCTTCTTCAATAGAGGCTGGAGCATCCCCCGATGGGGTCGAGTTCAATTCCAGGTTCCACCAGGTCAGGGCGCTTCACAATGATTCATTCACCGGTGGGGAGATTAAAGTCTACGCATGTGCCATCGCCGTTGCTCTGCTTGCTGTTACTGCTTTTGAACTCTGTGCCTCTAAGTATGTGCTATGCAATTGA
mRNA sequence
ATGTTTGGTGCGGACTTTTTGAGTCTGACTTCACCAACCCGGTCACCCATTATAAATCAACAAACTACTGCACGTTTTGTTACCCAAATCATGATGGAGCTTGAAGCAGAGATGAGGGATTTGGAGTGTCGTGCTGAAAATCAGCAACAAAGGGTGCGTTACTACGAGAGTATAGCCATTTACACCATTCTGGCTTACATTACCAGCCTGCGCTTCTTCTACTCTGCTGTCTCCTCCCCTGCTTCCTCCACCCTCCACTGTGTTCATTGGCCCCTGGTTTCGGCTCTCACTCTTTCCTGCTCATTCCTCTACTTCTTCATCCTGCTGCCGGTTTTCATTAAATTGTACCGCACTCACAACCTGCTCGACATAATTTGCAAGGAACATGCTGACATCTATCAACGGATCTTGAACGGTAGGAGCCAACATGGTGGGGCTTCTTCAATAGAGGCTGGAGCATCCCCCGATGGGGTCGAGTTCAATTCCAGGTTCCACCAGGTCAGGGCGCTTCACAATGATTCATTCACCGGTGGGGAGATTAAAGTCTACGCATGTGCCATCGCCGTTGCTCTGCTTGCTGTTACTGCTTTTGAACTCTGTGCCTCTAAGTATGTGCTATGCAATTGA
Coding sequence (CDS)
ATGTTTGGTGCGGACTTTTTGAGTCTGACTTCACCAACCCGGTCACCCATTATAAATCAACAAACTACTGCACGTTTTGTTACCCAAATCATGATGGAGCTTGAAGCAGAGATGAGGGATTTGGAGTGTCGTGCTGAAAATCAGCAACAAAGGGTGCGTTACTACGAGAGTATAGCCATTTACACCATTCTGGCTTACATTACCAGCCTGCGCTTCTTCTACTCTGCTGTCTCCTCCCCTGCTTCCTCCACCCTCCACTGTGTTCATTGGCCCCTGGTTTCGGCTCTCACTCTTTCCTGCTCATTCCTCTACTTCTTCATCCTGCTGCCGGTTTTCATTAAATTGTACCGCACTCACAACCTGCTCGACATAATTTGCAAGGAACATGCTGACATCTATCAACGGATCTTGAACGGTAGGAGCCAACATGGTGGGGCTTCTTCAATAGAGGCTGGAGCATCCCCCGATGGGGTCGAGTTCAATTCCAGGTTCCACCAGGTCAGGGCGCTTCACAATGATTCATTCACCGGTGGGGAGATTAAAGTCTACGCATGTGCCATCGCCGTTGCTCTGCTTGCTGTTACTGCTTTTGAACTCTGTGCCTCTAAGTATGTGCTATGCAATTGA
Protein sequence
MFGADFLSLTSPTRSPIINQQTTARFVTQIMMELEAEMRDLECRAENQQQRVRYYESIAIYTILAYITSLRFFYSAVSSPASSTLHCVHWPLVSALTLSCSFLYFFILLPVFIKLYRTHNLLDIICKEHADIYQRILNGRSQHGGASSIEAGASPDGVEFNSRFHQVRALHNDSFTGGEIKVYACAIAVALLAVTAFELCASKYVLCN
Homology
BLAST of Csor.00g039450 vs. NCBI nr
Match:
KAG6605754.1 (hypothetical protein SDJN03_03071, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 404 bits (1038), Expect = 7.13e-142
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0
Query: 1 MFGADFLSLTSPTRSPIINQQTTARFVTQIMMELEAEMRDLECRAENQQQRVRYYESIAI 60
MFGADFLSLTSPTRSPIINQQTTARFVTQIMMELEAEMRDLECRAENQQQRVRYYESIAI
Sbjct: 1 MFGADFLSLTSPTRSPIINQQTTARFVTQIMMELEAEMRDLECRAENQQQRVRYYESIAI 60
Query: 61 YTILAYITSLRFFYSAVSSPASSTLHCVHWPLVSALTLSCSFLYFFILLPVFIKLYRTHN 120
YTILAYITSLRFFYSAVSSPASSTLHCVHWPLVSALTLSCSFLYFFILLPVFIKLYRTHN
Sbjct: 61 YTILAYITSLRFFYSAVSSPASSTLHCVHWPLVSALTLSCSFLYFFILLPVFIKLYRTHN 120
Query: 121 LLDIICKEHADIYQRILNGRSQHGGASSIEAGASPDGVEFNSRFHQVRALHNDSFTGGEI 180
LLDIICKEHADIYQRILNGRSQHGGASSIEAGASPDGVEFNSRFHQVRALHNDSFTGGEI
Sbjct: 121 LLDIICKEHADIYQRILNGRSQHGGASSIEAGASPDGVEFNSRFHQVRALHNDSFTGGEI 180
Query: 181 KVYACAIAVALLAVTAFELCASKYVLCN 208
KVYACAIAVALLAVTAFELCASKYVLCN
Sbjct: 181 KVYACAIAVALLAVTAFELCASKYVLCN 208
BLAST of Csor.00g039450 vs. NCBI nr
Match:
KAG6605757.1 (hypothetical protein SDJN03_03074, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 227 bits (579), Expect = 1.60e-72
Identity = 126/177 (71.19%), Postives = 136/177 (76.84%), Query Frame = 0
Query: 32 MELEAEMRDLECRAENQQQRVRYYESIAIYTILAYITSLRFFYSAVSSPASSTLHCVHWP 91
MELEA RDLEC AENQQQRVRYYES A YT L Y+ LRFFY AVSS +SS LHCVHWP
Sbjct: 1 MELEALKRDLECLAENQQQRVRYYESRANYTTLGYLAWLRFFYFAVSSNSSS-LHCVHWP 60
Query: 92 LVSALTLSCSFLYFFILLPVFIKLYRTHNLLDIICKEHADIYQRILNGRSQHGGASSIEA 151
+V L+LS S LYF ILLP FIKLYRTHNLL IC H + QRIL +Q G EA
Sbjct: 61 MVLGLSLSSSSLYFLILLPPFIKLYRTHNLLHTICNRHTHLCQRILESTNQDG-----EA 120
Query: 152 GASPDGVEFNSRFHQVRALHNDSFTGGEIKVYACAIAVALLAVTAFELCASKYVLCN 208
GAS DGVEFN RFHQVRALHNDSF+GGEIKVY CA+A AL AVTAF+L A KYV+CN
Sbjct: 121 GASTDGVEFNVRFHQVRALHNDSFSGGEIKVYTCAVAFALFAVTAFQLYACKYVVCN 171
BLAST of Csor.00g039450 vs. NCBI nr
Match:
XP_022957795.1 (uncharacterized protein LOC111459230 isoform X1 [Cucurbita moschata])
HSP 1 Score: 224 bits (572), Expect = 1.85e-71
Identity = 127/177 (71.75%), Postives = 134/177 (75.71%), Query Frame = 0
Query: 32 MELEAEMRDLECRAENQQQRVRYYESIAIYTILAYITSLRFFYSAVSSPASSTLHCVHWP 91
MELE RDLE AE QQQRVRYYES AIYT L Y+ LRFFY AVSS SSTLHCVHWP
Sbjct: 1 MELEEVRRDLEYLAEKQQQRVRYYESRAIYTTLGYLAWLRFFYFAVSSN-SSTLHCVHWP 60
Query: 92 LVSALTLSCSFLYFFILLPVFIKLYRTHNLLDIICKEHADIYQRILNGRSQHGGASSIEA 151
+V L+LSCS LY ILLP FIKLYRTHNLL IC +H + QRIL +Q G EA
Sbjct: 61 MVFGLSLSCSSLYLLILLPPFIKLYRTHNLLHTICNQHTHLCQRILEATNQDG-----EA 120
Query: 152 GASPDGVEFNSRFHQVRALHNDSFTGGEIKVYACAIAVALLAVTAFELCASKYVLCN 208
GAS GVEFN RFHQVRALHNDSF+GGEIKVY CAIA ALLAVTAFEL A KYVLC
Sbjct: 121 GASTHGVEFNVRFHQVRALHNDSFSGGEIKVYTCAIAFALLAVTAFELGACKYVLCK 171
BLAST of Csor.00g039450 vs. NCBI nr
Match:
KAG6605756.1 (hypothetical protein SDJN03_03073, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 223 bits (569), Expect = 8.16e-69
Identity = 125/177 (70.62%), Postives = 133/177 (75.14%), Query Frame = 0
Query: 32 MELEAEMRDLECRAENQQQRVRYYESIAIYTILAYITSLRFFYSAVSSPASSTLHCVHWP 91
MELE RDLE AE QQQRVRYYES AIYT L Y+ LRFFY AVSS SSTLHCVHWP
Sbjct: 161 MELEEVRRDLEYLAEKQQQRVRYYESRAIYTTLGYLAWLRFFYFAVSSN-SSTLHCVHWP 220
Query: 92 LVSALTLSCSFLYFFILLPVFIKLYRTHNLLDIICKEHADIYQRILNGRSQHGGASSIEA 151
+V L+LSCS LY ILLP FIKLYRTHNLL IC +H + QRIL +Q G EA
Sbjct: 221 MVFGLSLSCSSLYLLILLPPFIKLYRTHNLLHTICNQHTHLCQRILEATNQDG-----EA 280
Query: 152 GASPDGVEFNSRFHQVRALHNDSFTGGEIKVYACAIAVALLAVTAFELCASKYVLCN 208
GAS GVEFN RFHQVRALHNDSF+GGEIKVY CA+A AL AVTAFEL A KYVLC
Sbjct: 281 GASTHGVEFNFRFHQVRALHNDSFSGGEIKVYTCAVAFALFAVTAFELYAGKYVLCK 331
BLAST of Csor.00g039450 vs. NCBI nr
Match:
XP_023533522.1 (uncharacterized protein LOC111795372 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 201 bits (511), Expect = 7.64e-62
Identity = 109/156 (69.87%), Postives = 118/156 (75.64%), Query Frame = 0
Query: 32 MELEAEMRDLECRAENQQQRVRYYESIAIYTILAYITSLRFFYSAVSSPASSTLHCVHWP 91
MELE RDLE AE QQQRVRYYES AIYT L Y+ LRFFYSAVSS +SSTLHCVHW
Sbjct: 8 MELEEVRRDLEYLAEKQQQRVRYYESRAIYTTLGYLAWLRFFYSAVSSNSSSTLHCVHWA 67
Query: 92 LVSALTLSCSFLYFFILLPVFIKLYRTHNLLDIICKEHADIYQRILNGRSQHGGASSIEA 151
+V L+LS S LYF ILLP FIKLYRTHNLL IC H + QRIL +Q G EA
Sbjct: 68 MVLGLSLSSSSLYFLILLPPFIKLYRTHNLLHTICNRHTHLCQRILESTNQDG-----EA 127
Query: 152 GASPDGVEFNSRFHQVRALHNDSFTGGEIKVYACAI 187
GAS DGVEFN RFHQVRALHNDSF+GGEIKVY C++
Sbjct: 128 GASTDGVEFNVRFHQVRALHNDSFSGGEIKVYTCSV 158
BLAST of Csor.00g039450 vs. ExPASy TrEMBL
Match:
A0A6J1H1I5 (uncharacterized protein LOC111459230 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459230 PE=4 SV=1)
HSP 1 Score: 224 bits (572), Expect = 8.95e-72
Identity = 127/177 (71.75%), Postives = 134/177 (75.71%), Query Frame = 0
Query: 32 MELEAEMRDLECRAENQQQRVRYYESIAIYTILAYITSLRFFYSAVSSPASSTLHCVHWP 91
MELE RDLE AE QQQRVRYYES AIYT L Y+ LRFFY AVSS SSTLHCVHWP
Sbjct: 1 MELEEVRRDLEYLAEKQQQRVRYYESRAIYTTLGYLAWLRFFYFAVSSN-SSTLHCVHWP 60
Query: 92 LVSALTLSCSFLYFFILLPVFIKLYRTHNLLDIICKEHADIYQRILNGRSQHGGASSIEA 151
+V L+LSCS LY ILLP FIKLYRTHNLL IC +H + QRIL +Q G EA
Sbjct: 61 MVFGLSLSCSSLYLLILLPPFIKLYRTHNLLHTICNQHTHLCQRILEATNQDG-----EA 120
Query: 152 GASPDGVEFNSRFHQVRALHNDSFTGGEIKVYACAIAVALLAVTAFELCASKYVLCN 208
GAS GVEFN RFHQVRALHNDSF+GGEIKVY CAIA ALLAVTAFEL A KYVLC
Sbjct: 121 GASTHGVEFNVRFHQVRALHNDSFSGGEIKVYTCAIAFALLAVTAFELGACKYVLCK 171
BLAST of Csor.00g039450 vs. ExPASy TrEMBL
Match:
A0A6J1H082 (uncharacterized protein LOC111459230 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459230 PE=4 SV=1)
HSP 1 Score: 196 bits (499), Expect = 8.72e-61
Identity = 108/156 (69.23%), Postives = 117/156 (75.00%), Query Frame = 0
Query: 32 MELEAEMRDLECRAENQQQRVRYYESIAIYTILAYITSLRFFYSAVSSPASSTLHCVHWP 91
MELE RDLE AE QQQRVRYYES AIYT L Y+ LRFFY AVSS SSTLHCVHWP
Sbjct: 1 MELEEVRRDLEYLAEKQQQRVRYYESRAIYTTLGYLAWLRFFYFAVSSN-SSTLHCVHWP 60
Query: 92 LVSALTLSCSFLYFFILLPVFIKLYRTHNLLDIICKEHADIYQRILNGRSQHGGASSIEA 151
+V L+LSCS LY ILLP FIKLYRTHNLL IC +H + QRIL +Q G EA
Sbjct: 61 MVFGLSLSCSSLYLLILLPPFIKLYRTHNLLHTICNQHTHLCQRILEATNQDG-----EA 120
Query: 152 GASPDGVEFNSRFHQVRALHNDSFTGGEIKVYACAI 187
GAS GVEFN RFHQVRALHNDSF+GGEIKVY C++
Sbjct: 121 GASTHGVEFNVRFHQVRALHNDSFSGGEIKVYTCSV 150
BLAST of Csor.00g039450 vs. ExPASy TrEMBL
Match:
A0A6J1H1A1 (uncharacterized protein LOC111459231 OS=Cucurbita moschata OX=3662 GN=LOC111459231 PE=4 SV=1)
HSP 1 Score: 187 bits (476), Expect = 2.61e-57
Identity = 111/168 (66.07%), Postives = 124/168 (73.81%), Query Frame = 0
Query: 32 MELEAEMRDLECRAENQQQRVRYYESIAIYTILAYITSLRFFYSAVSSPASSTLHCVHWP 91
MEL+ RD E AEN+QQ+VRYY+S YT +AY+ LRFFY A+SS ASSTLHCVHWP
Sbjct: 1 MELQWLKRDFETLAENKQQKVRYYDSRVNYTTMAYLAWLRFFYFALSS-ASSTLHCVHWP 60
Query: 92 LVSALTLSCSFLYFFILLPVFIKLYRTHNLLDIICKEHADIYQRILNGRSQHGGASSIEA 151
+V L+LS SFLYF ILL FIKLYRTHNLLD ICKEH I QRIL +Q EA
Sbjct: 61 MVLGLSLSSSFLYFLILLQPFIKLYRTHNLLDTICKEHTLICQRILEAMNQ-----DAEA 120
Query: 152 GASPDGVEFNSRFHQVRALHNDSFTGGEIKVYACAIAVALLAVTAFEL 199
GAS DGV F+ QVRAL +DSF GGE+KVY CAIA ALLAVTAFEL
Sbjct: 121 GASNDGVRFDFGL-QVRALSDDSFCGGEMKVYGCAIAFALLAVTAFEL 161
BLAST of Csor.00g039450 vs. ExPASy TrEMBL
Match:
A0A6J1H053 (uncharacterized protein LOC111459230 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111459230 PE=4 SV=1)
HSP 1 Score: 167 bits (424), Expect = 1.75e-49
Identity = 104/168 (61.90%), Postives = 118/168 (70.24%), Query Frame = 0
Query: 32 MELEAEMRDLECRAENQQQRVRYYESIAIYTILAYITSLRFFYSAVSSPASSTLHCVHWP 91
M+L+ RD E AEN VRYY+S A T LAY++ LRFFY AVS PASSTLHC HWP
Sbjct: 1 MKLQWVRRDFESLAEN----VRYYKSRATCTTLAYLSWLRFFYFAVS-PASSTLHCFHWP 60
Query: 92 LVSALTLSCSFLYFFILLPVFIKLYRTHNLLDIICKEHADIYQRILNGRSQHGGASSIEA 151
+V L+LS SFLYF ILLP FIKLYR HNLL IC +H I QRI +Q+G +A
Sbjct: 61 MVLDLSLSSSFLYFLILLPAFIKLYRIHNLLHTICNQHTHICQRIWEAMNQNG-----QA 120
Query: 152 GASPDGVEFNSRFHQVRALHNDSFTGGEIKVYACAIAVALLAVTAFEL 199
GA DGV F+ QVRAL +DSF+GGEIKVY CAIA AL AVTAFEL
Sbjct: 121 GALNDGVGFDFGV-QVRALTDDSFSGGEIKVYGCAIAFALFAVTAFEL 157
BLAST of Csor.00g039450 vs. ExPASy TrEMBL
Match:
A0A6J1DTV6 (uncharacterized protein LOC111023951 OS=Momordica charantia OX=3673 GN=LOC111023951 PE=4 SV=1)
HSP 1 Score: 118 bits (296), Expect = 5.33e-30
Identity = 74/167 (44.31%), Postives = 102/167 (61.08%), Query Frame = 0
Query: 34 LEAEMRDLECRAENQQQRVRYYESIAIYTILAYITSLRFFYSAVSSPASSTLHCVHWPLV 93
L+ + +L+ AE Q+ +R+YES A + Y+ RFF+ A+S SS L C+ W +V
Sbjct: 6 LKRDFEELKLLAEKQEPILRFYESRAQNITMGYLIWERFFFFALSQ-TSSPLKCIDWRVV 65
Query: 94 SALTLSCSFLYFFILLPVFIKLYRTHNLLDIICKEHADIYQRILNGRSQHGGASSIEAGA 153
L+L CSF+YF + L LYRT N +D+ICKE +DI Q+IL+ +Q G S++EAG
Sbjct: 66 LGLSLVCSFVYFLLFLEAVTMLYRTQNQMDMICKEQSDICQQILDAGNQDDGGSAMEAGD 125
Query: 154 SPDGVEFNSRFHQVRALHND-SFTGGEIKVYACAIAVALLAVTAFEL 199
DGV FN FH L+ D SF + KVY AI +L+AVTA EL
Sbjct: 126 LSDGVAFNFSFHMRTTLNYDYSFRIFQKKVYISAIISSLVAVTALEL 171
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6605754.1 | 7.13e-142 | 100.00 | hypothetical protein SDJN03_03071, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6605757.1 | 1.60e-72 | 71.19 | hypothetical protein SDJN03_03074, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022957795.1 | 1.85e-71 | 71.75 | uncharacterized protein LOC111459230 isoform X1 [Cucurbita moschata] | [more] |
KAG6605756.1 | 8.16e-69 | 70.62 | hypothetical protein SDJN03_03073, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_023533522.1 | 7.64e-62 | 69.87 | uncharacterized protein LOC111795372 [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1H1I5 | 8.95e-72 | 71.75 | uncharacterized protein LOC111459230 isoform X1 OS=Cucurbita moschata OX=3662 GN... | [more] |
A0A6J1H082 | 8.72e-61 | 69.23 | uncharacterized protein LOC111459230 isoform X2 OS=Cucurbita moschata OX=3662 GN... | [more] |
A0A6J1H1A1 | 2.61e-57 | 66.07 | uncharacterized protein LOC111459231 OS=Cucurbita moschata OX=3662 GN=LOC1114592... | [more] |
A0A6J1H053 | 1.75e-49 | 61.90 | uncharacterized protein LOC111459230 isoform X3 OS=Cucurbita moschata OX=3662 GN... | [more] |
A0A6J1DTV6 | 5.33e-30 | 44.31 | uncharacterized protein LOC111023951 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
Match Name | E-value | Identity | Description | |