Csor.00g023520 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g023520
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr04: 3919927 .. 3921925 (-)
RNA-Seq ExpressionCsor.00g023520
SyntenyCsor.00g023520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalstop_codonterminal
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGACAGTGTTTTGAAGTCCCATGTTCTTATTGAATGGCTGACATCCAGTGCTTTTCAGATGATAGAAAGTAGGAGACCTCCTTTGGAGGTTGAAGCCCTAATTTGTGCGAGGTGGACATGATGCTCCCAAGTTCCAACATACAGGGCTTAGTTCATGTCAATCTTAATCTTGCTTGTGAAGTTTTGACTATACACGTAGAATGCCTGATATTTAAAGGCTTTGCCGATAGTCTTTTTTCTCGTGTACCTTCTTCATGCAGTGGGGAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAACAACTTTTTGACCACAACCTTCGTTAAGGTGTGTTCGAGGATGCCCTTGAACAAATAAACTTTAGTAACATAAAAGTTTTAATGTTACTTTCAAATATGATGATTATGAGTAGGAAGTGCTTTTCTATGGTGGAAAAGATGCTTGTCACACTCTCAAACATAGTATTAGTTGCTTAAGAGGTTTTCCTTTCTGCTTATTAATGAATTGCTTTATTTCCATTATGTGTTCAGGTTCTCCTTTTAGTACCAGCAAATTTCGTGGATGGCAATTGATTCATCAAGGGGCTCTAACGCTAACTTGTCTAAAAGTTTCAAATTGTTGCACATTAGTATTAATATAATCCTTATCAGTCAGCATAGTCTAGAATTGATCACAAATACTTGTTTCTAACATGAGACTTAAAAATATCACATATTAGCAGGTGAATCTCTTCAACTAATCTTCTGCTTCTTTTTCATATAGGTTACTTGACTCTGATGTTGGTGGCTCATACGCATACACTGCTTCATTTTCTTTCCTGAACTTTTCACACCCTGAAAAGAGATGGTTCATGATTTGGAGCGATTAAAGAACACCTGGTGCATGCTCTTTCAAATGGGTTGACTATAGAGTAATCCTTGGAATATAAAAATTTCTCCATTATTCATGTGCTCAATTCATTTCTTTTAAGTACTAAGCTATTTCAGGATGATGACTGTGCATATAATGGGCCAGAAGAATGAGTTTATGAAGGCTATCTAATATTTATTATGATCTTCTATCTTGTGTTTTCTAGTCATTGCTAGTCTCACCTTCTATCTTGTGCCTATTGACGTTTTCCTCTGTGGTATTGATACAGATTTTCAATTAAAGAAAATTCTTCCAAGTTTCAGGTTCACGGACTTTTCTTTGTCTGGGATACTACACCTTTTTTGGAACTTTATTCGCATCCCAGCGGTGATTCATCGACTGTATTGCTGAATCTCGTCTTGAATTACAACTATTGCTACCGATTAACTCAGGTTTGTTCAAATTCTTCTTACATTGAAAGTCTTAGTGCCATCTACAGTTCACAGCCTCAAACTGTTAGTTTGTTTGAGCTCTGTCTAAGATTGATTTCTACGAGAAATGATAACATTTTCAATCCACTTTTCTAGGTCAGAATTTGGATTGGACAACAAAGAAACACGACATAAAAAGGATAAAAGTTGGATAAGAGAAGAAAAAAAGGAACAAATGGGTATTGGTTGGTTAAGTAAAAGGATCTTTTTTATGCATCTCCAAAAGCTCTACATGAGTTCTTTATATAAAAACTTTACAGGTAAGAAAGAACACTTTCTACCATTGGAATGATTTTGTATTGGGAAAATGGGGTTTCCCCACCAGAAATATCACTTTCTTTTGCAGCAGATTCCTTCGTCTCAGGTTTCCACCATTAACAGACTTCTTTTTCTTTTCCTCAAATGAAAATGAAAGTTACGGCTGCTGAAGCTTTTAATGGCTGCAATACAGATATATATGAACCTTGAGGATAAGGAATCAGTTCCATTTTCGATATCTTAATTTTAATGGCATAAAGATGATTTAAATGACTAAAAATGGCTATGAAGTGCTGAAGAACAATGAAGAATCACCTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATGGTGATTAACGATAAAGCATCTCTTCTGTTTCACAGTGA

mRNA sequence

ATGGTTGACAGTGTTTTGAAGTCCCATGTTCTTATTGAATGGCTGACATCCAGTGCTTTTCAGATGATAGAAAGTAGGAGACCTCCTTTGGAGGTTGAAGCCCTAATTTGTGCGAGATTTTCAATTAAAGAAAATTCTTCCAAGTTTCAGGTTCACGGACTTTTCTTTGTCTGGGATACTACACCTTTTTTGGAACTTTATTCGCATCCCAGCGGTGATTCATCGACTGTATTGCTGAATCTCGTCTTGAATTACAACTATTGCTACCGATTAACTCAGTGA

Coding sequence (CDS)

ATGGTTGACAGTGTTTTGAAGTCCCATGTTCTTATTGAATGGCTGACATCCAGTGCTTTTCAGATGATAGAAAGTAGGAGACCTCCTTTGGAGGTTGAAGCCCTAATTTGTGCGAGATTTTCAATTAAAGAAAATTCTTCCAAGTTTCAGGTTCACGGACTTTTCTTTGTCTGGGATACTACACCTTTTTTGGAACTTTATTCGCATCCCAGCGGTGATTCATCGACTGTATTGCTGAATCTCGTCTTGAATTACAACTATTGCTACCGATTAACTCAGTGA

Protein sequence

MVDSVLKSHVLIEWLTSSAFQMIESRRPPLEVEALICARFSIKENSSKFQVHGLFFVWDTTPFLELYSHPSGDSSTVLLNLVLNYNYCYRLTQ
Homology
[Close]
BLAST of Csor.00g023520 vs. NCBI nr
Match: KAG6600587.1 (hypothetical protein SDJN03_05820, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 191 bits (484), Expect = 3.96e-61
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MVDSVLKSHVLIEWLTSSAFQMIESRRPPLEVEALICARFSIKENSSKFQVHGLFFVWDT 60
          MVDSVLKSHVLIEWLTSSAFQMIESRRPPLEVEALICARFSIKENSSKFQVHGLFFVWDT
Sbjct: 1  MVDSVLKSHVLIEWLTSSAFQMIESRRPPLEVEALICARFSIKENSSKFQVHGLFFVWDT 60

Query: 61 TPFLELYSHPSGDSSTVLLNLVLNYNYCYRLTQ 93
          TPFLELYSHPSGDSSTVLLNLVLNYNYCYRLTQ
Sbjct: 61 TPFLELYSHPSGDSSTVLLNLVLNYNYCYRLTQ 93

The following BLAST results are available for this feature:
BLAST of Csor.00g023520 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g023520 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600587.13.96e-61100.00hypothetical protein SDJN03_05820, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g023520 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g023520 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g023520.m01Csor.00g023520.m01mRNA