CsaV3_UNG209230 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_UNG209230
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionNADH-ubiquinone oxidoreductase (Complex I), chain 5
Locationscaffold18_1: 910435 .. 910734 (-)
RNA-Seq ExpressionCsaV3_UNG209230
SyntenyCsaV3_UNG209230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGATTCAGTCAACGAAAGTCCCTCAAACTCAATCAAGATCAACCACTATTTGAACCTCTCCCCTTTGAAAAGAAAGTAGGAGAAGGGGGTTCATTTCTTAGTAAACCTCCGGTGCTGGTAAGGTCGGGACCGTGGTCGTCCGTCTCCGCTTTGCCGGCCGATAAGATCTTTGAGATTGACCAGCCAGCTGGGTTGCTTTGGCTATTCCTTTCTATTGAAAAGGAGTCAGCTGTCTGCGCGAGTAACCTTCTGATAGGCTTCGCTGGACGACACGGCATTCTCGTTCAAATATAG

mRNA sequence

ATGGATGGATTCAGTCAACGAAAGTCCCTCAAACTCAATCAAGATCAACCACTATTTGAACCTCTCCCCTTTGAAAAGAAAGTAGGAGAAGGGGGTTCATTTCTTAGTAAACCTCCGGTGCTGGTAAGGTCGGGACCGTGGTCGTCCGTCTCCGCTTTGCCGGCCGATAAGATCTTTGAGATTGACCAGCCAGCTGGGTTGCTTTGGCTATTCCTTTCTATTGAAAAGGAGTCAGCTGTCTGCGCGAGTAACCTTCTGATAGGCTTCGCTGGACGACACGGCATTCTCGTTCAAATATAG

Coding sequence (CDS)

ATGGATGGATTCAGTCAACGAAAGTCCCTCAAACTCAATCAAGATCAACCACTATTTGAACCTCTCCCCTTTGAAAAGAAAGTAGGAGAAGGGGGTTCATTTCTTAGTAAACCTCCGGTGCTGGTAAGGTCGGGACCGTGGTCGTCCGTCTCCGCTTTGCCGGCCGATAAGATCTTTGAGATTGACCAGCCAGCTGGGTTGCTTTGGCTATTCCTTTCTATTGAAAAGGAGTCAGCTGTCTGCGCGAGTAACCTTCTGATAGGCTTCGCTGGACGACACGGCATTCTCGTTCAAATATAG

Protein sequence

MDGFSQRKSLKLNQDQPLFEPLPFEKKVGEGGSFLSKPPVLVRSGPWSSVSALPADKIFEIDQPAGLLWLFLSIEKESAVCASNLLIGFAGRHGILVQI*
Homology
BLAST of CsaV3_UNG209230 vs. NCBI nr
Match: KAA0040734.1 (NADH-ubiquinone oxidoreductase (complex I), chain 5 [Cucumis melo var. makuwa] >TYK27827.1 NADH-ubiquinone oxidoreductase (complex I), chain 5 [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 1.0e-31
Identity = 74/77 (96.10%), Postives = 74/77 (96.10%), Query Frame = 0

Query: 25  EKKVGE--GGSFLSKPPVLVRSGPWSSVSALPADKIFEIDQPAGLLWLFLSIEKESAVCA 84
           EKKVGE  GG FLSKPPVLVRSGPWSSVSALPADKIFEIDQPAGLLWLFLSIEKESAVCA
Sbjct: 35  EKKVGESLGGEFLSKPPVLVRSGPWSSVSALPADKIFEIDQPAGLLWLFLSIEKESAVCA 94

Query: 85  SNLLIGFAGRHGILVQI 100
           SNLLIGFAGRHGILVQI
Sbjct: 95  SNLLIGFAGRHGILVQI 111

BLAST of CsaV3_UNG209230 vs. NCBI nr
Match: KJB09735.1 (hypothetical protein B456_001G161100 [Gossypium raimondii])

HSP 1 Score: 125.2 bits (313), Expect = 3.2e-25
Identity = 60/70 (85.71%), Postives = 64/70 (91.43%), Query Frame = 0

Query: 25  EKKVGEGGSFLSKPPVLVRSGPWSSVSALPADKIFEIDQPAGLLWLFLSIEKESAVCASN 84
           EKKVG GGS +S PPVLVRSGPWSSVS LPADKI EIDQPAGL+WLFLSIEKESAVCAS+
Sbjct: 59  EKKVGFGGSLISTPPVLVRSGPWSSVSGLPADKISEIDQPAGLVWLFLSIEKESAVCASH 118

Query: 85  LLIGFAGRHG 95
           LL+G AGRHG
Sbjct: 119 LLLGSAGRHG 128

BLAST of CsaV3_UNG209230 vs. NCBI nr
Match: KAG7529238.1 (hypothetical protein ISN45_Un97g000190 [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-24
Identity = 62/75 (82.67%), Postives = 66/75 (88.00%), Query Frame = 0

Query: 25  EKKVGEGGSFLSKPPVLVRSGPWSSVSALPADKIFEIDQPAGLLWLFLSIEKESAVCASN 84
           EKKVG GGS +S P VLVRS PWSSVS LPADKI EIDQPAGL+WLFLSIEKESAVCAS+
Sbjct: 75  EKKVGFGGSLISTPLVLVRSEPWSSVSGLPADKISEIDQPAGLVWLFLSIEKESAVCASH 134

Query: 85  LLIGFAGRHGILVQI 100
           LL+G A RHGILVQI
Sbjct: 135 LLLGSAERHGILVQI 149

BLAST of CsaV3_UNG209230 vs. NCBI nr
Match: KAF3949553.1 (hypothetical protein CMV_024591 [Castanea mollissima])

HSP 1 Score: 117.9 bits (294), Expect = 5.2e-23
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0

Query: 36  SKPPVLVRSGPWSSVSALPADKIFEIDQPAGLLWLFLSIEKESAVCASNLLIGFAGRHGI 95
           S PPVLVRSGPWSSVS LPADKI EIDQPAGL+WLFLSIEKESAVCAS+LL+G AGRHGI
Sbjct: 67  STPPVLVRSGPWSSVSGLPADKISEIDQPAGLVWLFLSIEKESAVCASHLLLGSAGRHGI 126

Query: 96  LVQI 100
           LVQI
Sbjct: 127 LVQI 130

BLAST of CsaV3_UNG209230 vs. NCBI nr
Match: RDY14284.1 (hypothetical protein CR513_00702, partial [Mucuna pruriens])

HSP 1 Score: 115.5 bits (288), Expect = 2.6e-22
Identity = 58/78 (74.36%), Postives = 65/78 (83.33%), Query Frame = 0

Query: 21  PLPFEKKVGEGGSFLSKPPVLVRSGPWSSVSALPADKIFEIDQPAGLLWLFLSIE-KESA 80
           P+ +   V   GS +S PPVL+RSGPWSSVS LPADKI EIDQPAGL+WLFLSIE KESA
Sbjct: 27  PVAYVVSVSGVGSLISTPPVLIRSGPWSSVSGLPADKISEIDQPAGLVWLFLSIEKKESA 86

Query: 81  VCASNLLIGFAGRHGILV 98
           VCAS+LL+G AGRHGILV
Sbjct: 87  VCASHLLLGSAGRHGILV 104

BLAST of CsaV3_UNG209230 vs. ExPASy TrEMBL
Match: A0A5D3DVI9 (NADH-ubiquinone oxidoreductase (Complex I), chain 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold79750G00010 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.0e-32
Identity = 74/77 (96.10%), Postives = 74/77 (96.10%), Query Frame = 0

Query: 25  EKKVGE--GGSFLSKPPVLVRSGPWSSVSALPADKIFEIDQPAGLLWLFLSIEKESAVCA 84
           EKKVGE  GG FLSKPPVLVRSGPWSSVSALPADKIFEIDQPAGLLWLFLSIEKESAVCA
Sbjct: 35  EKKVGESLGGEFLSKPPVLVRSGPWSSVSALPADKIFEIDQPAGLLWLFLSIEKESAVCA 94

Query: 85  SNLLIGFAGRHGILVQI 100
           SNLLIGFAGRHGILVQI
Sbjct: 95  SNLLIGFAGRHGILVQI 111

BLAST of CsaV3_UNG209230 vs. ExPASy TrEMBL
Match: A0A0D2QR83 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G161100 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.6e-25
Identity = 60/70 (85.71%), Postives = 64/70 (91.43%), Query Frame = 0

Query: 25  EKKVGEGGSFLSKPPVLVRSGPWSSVSALPADKIFEIDQPAGLLWLFLSIEKESAVCASN 84
           EKKVG GGS +S PPVLVRSGPWSSVS LPADKI EIDQPAGL+WLFLSIEKESAVCAS+
Sbjct: 59  EKKVGFGGSLISTPPVLVRSGPWSSVSGLPADKISEIDQPAGLVWLFLSIEKESAVCASH 118

Query: 85  LLIGFAGRHG 95
           LL+G AGRHG
Sbjct: 119 LLLGSAGRHG 128

BLAST of CsaV3_UNG209230 vs. ExPASy TrEMBL
Match: A0A371IH43 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_00702 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.2e-22
Identity = 58/78 (74.36%), Postives = 65/78 (83.33%), Query Frame = 0

Query: 21  PLPFEKKVGEGGSFLSKPPVLVRSGPWSSVSALPADKIFEIDQPAGLLWLFLSIE-KESA 80
           P+ +   V   GS +S PPVL+RSGPWSSVS LPADKI EIDQPAGL+WLFLSIE KESA
Sbjct: 27  PVAYVVSVSGVGSLISTPPVLIRSGPWSSVSGLPADKISEIDQPAGLVWLFLSIEKKESA 86

Query: 81  VCASNLLIGFAGRHGILV 98
           VCAS+LL+G AGRHGILV
Sbjct: 87  VCASHLLLGSAGRHGILV 104

BLAST of CsaV3_UNG209230 vs. ExPASy TrEMBL
Match: A0A6A5L5V7 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00002454 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.6e-22
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 0

Query: 32  GSFLSKPPVLVRSGPWSSVSALPADKIFEIDQPAGLLWLFLSIE-KESAVCASNLLIGFA 91
           GS +S PPVL+RSGPWSSVS LPADKI EIDQPAGL+WLFLSIE KESAVCAS+LL+G A
Sbjct: 37  GSLISTPPVLIRSGPWSSVSGLPADKISEIDQPAGLVWLFLSIEKKESAVCASHLLLGSA 96

Query: 92  GRHGILV 98
           GRHGILV
Sbjct: 97  GRHGILV 103

BLAST of CsaV3_UNG209230 vs. ExPASy TrEMBL
Match: G7LCU8 (NADH-ubiquinone oxidoreductase (Complex I), chain 5 OS=Medicago truncatula OX=3880 GN=MTR_8g059760 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.5e-20
Identity = 52/70 (74.29%), Postives = 58/70 (82.86%), Query Frame = 0

Query: 28 VGEGGSFLSKPPVLVRSGPWSSVSALPADKIFEIDQPAGLLWLFLSIE-KESAVCASNLL 87
          V   GS +S PPVL+RSGPWSSVS  PADKI EIDQPAGL+WLFLSIE KESAVCAS+LL
Sbjct: 15 VSRVGSLISTPPVLIRSGPWSSVSGFPADKISEIDQPAGLVWLFLSIEKKESAVCASHLL 74

Query: 88 IGFAGRHGIL 97
          +G AGRH  +
Sbjct: 75 LGSAGRHAFV 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0040734.11.0e-3196.10NADH-ubiquinone oxidoreductase (complex I), chain 5 [Cucumis melo var. makuwa] >... [more]
KJB09735.13.2e-2585.71hypothetical protein B456_001G161100 [Gossypium raimondii][more]
KAG7529238.11.2e-2482.67hypothetical protein ISN45_Un97g000190 [Arabidopsis thaliana x Arabidopsis areno... [more]
KAF3949553.15.2e-2389.06hypothetical protein CMV_024591 [Castanea mollissima][more]
RDY14284.12.6e-2274.36hypothetical protein CR513_00702, partial [Mucuna pruriens][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DVI95.0e-3296.10NADH-ubiquinone oxidoreductase (Complex I), chain 5 OS=Cucumis melo var. makuwa ... [more]
A0A0D2QR831.6e-2585.71Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G161100 PE=4 ... [more]
A0A371IH431.2e-2274.36Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_00702 P... [more]
A0A6A5L5V73.6e-2283.58Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00002454 PE=4 SV=1[more]
G7LCU87.5e-2074.29NADH-ubiquinone oxidoreductase (Complex I), chain 5 OS=Medicago truncatula OX=38... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_UNG209230.1CsaV3_UNG209230.1mRNA