CsaV3_UNG208470 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_UNG208470
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationscaffold18_1: 670666 .. 670875 (-)
RNA-Seq ExpressionCsaV3_UNG208470
SyntenyCsaV3_UNG208470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGATGAAGTCCCTACCTCTTTGATTTTATTTGGGCATTTGTCGAGCAATATTCTTTGCGCCTCTCTTGTTCCAGAGAAAAGGATCATGGCGCCCCAGAACCGTGACATCCAGCAGCAGCATCTCCTTGCATGCGAGAGACAACTATGCCAGCCTCATTCTCGGCTCAGTTATGAAAGAAAGCGGCAGACTCCGATCATTCTTTGA

mRNA sequence

ATGATTGATGAAGTCCCTACCTCTTTGATTTTATTTGGGCATTTGTCGAGCAATATTCTTTGCGCCTCTCTTGTTCCAGAGAAAAGGATCATGGCGCCCCAGAACCGTGACATCCAGCAGCAGCATCTCCTTGCATGCGAGAGACAACTATGCCAGCCTCATTCTCGGCTCAGTTATGAAAGAAAGCGGCAGACTCCGATCATTCTTTGA

Coding sequence (CDS)

ATGATTGATGAAGTCCCTACCTCTTTGATTTTATTTGGGCATTTGTCGAGCAATATTCTTTGCGCCTCTCTTGTTCCAGAGAAAAGGATCATGGCGCCCCAGAACCGTGACATCCAGCAGCAGCATCTCCTTGCATGCGAGAGACAACTATGCCAGCCTCATTCTCGGCTCAGTTATGAAAGAAAGCGGCAGACTCCGATCATTCTTTGA

Protein sequence

MIDEVPTSLILFGHLSSNILCASLVPEKRIMAPQNRDIQQQHLLACERQLCQPHSRLSYERKRQTPIIL*
Homology
[Close]
BLAST of CsaV3_UNG208470 vs. NCBI nr
Match: KAE8647101.1 (hypothetical protein Csa_021709 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 9.8e-29
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0 

Query: 1  MIDEVPTSLILFGHLSSNILCASLVPEKRIMAPQNRDIQQQHLLACERQLCQPHSRLSYE 60
          MIDEVPTSLILFGHLS NILCASLVPEKRIMAPQNRDIQQQH+LACERQLCQPHSRLSYE
Sbjct: 1  MIDEVPTSLILFGHLSRNILCASLVPEKRIMAPQNRDIQQQHVLACERQLCQPHSRLSYE 60

Query: 61 RKRQTPIIL 70
          RK+QTPIIL
Sbjct: 61 RKQQTPIIL 69

[Close]
BLAST of CsaV3_UNG208470 vs. NCBI nr
Match: KAE8647116.1 (hypothetical protein Csa_021715 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 4.6e-26
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 1  MIDEVPTSLILFGHLSSNILCASLVPEKRIMAPQNRDIQQQHLLACERQLCQPHSRLSYE 60
          MIDEVPTSLILFGHLS NILCASLVPEKRIMAPQNRDIQQQHLLACERQLCQPHSRLSYE
Sbjct: 1  MIDEVPTSLILFGHLSRNILCASLVPEKRIMAPQNRDIQQQHLLACERQLCQPHSRLSYE 60

Query: 61 RKRQ 65
          RKR+
Sbjct: 61 RKRR 64

[Close]
BLAST of CsaV3_UNG208470 vs. NCBI nr
Match: KGN47543.2 (hypothetical protein Csa_021540 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 3.1e-14
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 0 

Query: 1  MIDEVPTSLILFGHLSSNILCASLVPEKRIMAPQNRDIQQQHLLACERQLCQPHS 56
          MIDEVPTSLILFGHLS NILCASLVPEKRIMAPQNRDIQQQH ++C R+   P S
Sbjct: 1  MIDEVPTSLILFGHLSRNILCASLVPEKRIMAPQNRDIQQQH-VSCMRETTMPAS 54

The following BLAST results are available for this feature:
BLAST of CsaV3_UNG208470 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8647101.19.8e-2995.65hypothetical protein Csa_021709 [Cucumis sativus][more]
KAE8647116.14.6e-2696.88hypothetical protein Csa_021715 [Cucumis sativus][more]
KGN47543.23.1e-1481.82hypothetical protein Csa_021540 [Cucumis sativus][more]
BLAST of CsaV3_UNG208470 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_UNG208470 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_UNG208470 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_UNG208470.1CsaV3_UNG208470.1mRNA