CsaV3_7G030630 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G030630
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7: 19389468 .. 19391717 (+)
RNA-Seq Expression	CsaV3_7G030630
Synteny	CsaV3_7G030630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCCAAACAAAAACCTTTCCTCCCACTCTCTCCCCATTCGCTTCCATGGCCAAATCCTCAAATTCCAAATCCAAACCTCACTTTTTCCTCTGCTGTTTTGGATACTCCGACAAGCTTCCCCGCTTTAAGCCCCTCAAATCCCCCGCCGGTCACCGTAAACGTCAGTTTTCTTGGTTTAGGAACTCAAAGCCTCCTACGCCCCTTCATTCTTCCTCTTTTCCTTCCCATACGAACCGCTCCGTTACTAATTCCGACCGCCTCTCCTCGGTTTCTATTGCTCCCACCGCCACTACTAATTCCTCCAATGAAGATTTAGCCGTGCCGGTGGCCACAAATCGAACCGGCGAGGAGGTGATCATCAGCCCGCATGAGGTATTTGAATTTTGCTTCGACATTTTTTTTTTTTCTTTTTTAAATTAATTTGAAAACTTACCATTAAGATTAATTTTTTGAAAAATTATTTCACATAACAAAATTACAAGAAAATATTTACAAAAAATATATAGAAATTTCGTATTATGTTAAAGATATCAAAAAAATTAGTAATTGTATTTATTGAATAAGCATGAGAGTAATCAAAGTAATGAAAAAAAAAAGATATAGATTTGACTCGTATTGGCATGGGTGAACTAGTCTTATTAATTTTATATAATTAGGTATGCCAGATTTAATTTATAGTAAAATATGTATATGAACAACGACAAATTGTAATCAAGTATTTTTTTTCTTTCTATTTTTGAAAATAAAAACTTTAAAAAATTTAGCCTATTAGTTTGATATCTTTAATTAAAGAAGCATTAATATGACCTATTGAAGTAATTAATGTGGTCTAGTTAGTTACATAATCTATACCACATCAAATCAAATGAATAAATATGTTACATCAATCAAATGAATAAATATGTTACATCAAACTTTGAATTAATAGAGGTGATTTTTTCTTTTTTTCAAAAGGGATTAAAGCTTAATCAAATAGTAGATTTTAAAAAAATGATAAAATTATCTCGTAATAATATCCAATCAATTCAAATTGAATTTATCCAAATTATATAGTTTTTTTTAATATTTATAACGAAGTTAAATTATAAATTTTGAAATAAAAAACTTCATCTATGTACCATAAAAAGTTTTTGAACTTTAAAGATATTTAATGAATCTTTTGACTTCTAGCCCCAATGTTTTTTAAAAACATTGAAAATAATACTAAACCTTTTGTTCCATTTAACATTTTTTAAAAAATAAAACGAACTTATTAGATGTGGAAGATGAAAAAGTACATAAAAACTTTGGATGAAAATACAATAGAGATATAACTCATTTTCTTTTTTAATTAAAAAGGAGAACCTCTATTAAATATAACACGTCGAACCAAAACTTCTTCACAAATCGGCTTTATTTTAGATAAAAAAATGTCCTACGGATTTATAGAAATTGTGTACTATGGCTTATGTAGTCAAATCCTGTTTACGATGAATTGTATGTTTAATATCATATCAAAATTTCTATTTTTATTTTTAATTTTTTTTCATTTTAGGTAAAAAATGACACTGTCGCAGGAAAAACTATCCATGGGAGTAGTGAGCATTCAAACTCGCCAAACAAACCCATTGATCAAAGTCAATCAAGGTTCTCATTAACGAAAAGACTCGAGTCGTTTAGATCAATCCGGTTCAATCAAACAGCCCCACCAAAAAAGAATACAAAATCGATCAACGTACAAACACCCACCATATCACACTCTTTATCATTTCCGCCACCAAAACCAACCCCATCAAACAGAGTTAGTGAATTGCGAGAAAGCAAACGCGTTTGTTCAAAGTCAAAAAACAGAAAATCGAGCCAACAGTACCGATCGGTAGCGGCGATGTCGGTTTTGATGATGACGTTGGCAATGATGGTAGTTTGGGGAAGAATTTGTGCGATATTATGTACGGCAACATGGATTTTTATTGTAACAAGTTTAAGGTCAATTGTTGAAGAATATGAAGGAATTGATTTTGTTGAATCTGATTCATATTCGGAAGGGTTTAAGAAGAAATTAGTGGTTTTAAAAGGGTTTGTTTGTAGAAATCATAAATAATAGAAAATCTGGTGGAAGGAAGTATAGAGAAATGGACATTATTGAAAGGAATTTATTTATTTGATTATTTTGTATAATTTGAGTATGATATAAATTGTGGTTAGGGTAATTTATTTATTTGATTGTATATGGTTGGGTGGCAGTTTGGAATGACCTTAGGTTGAATGGCA

mRNA sequence

ATGGCCAAATCCTCAAATTCCAAATCCAAACCTCACTTTTTCCTCTGCTGTTTTGGATACTCCGACAAGCTTCCCCGCTTTAAGCCCCTCAAATCCCCCGCCGGTCACCGTAAACGTCAGTTTTCTTGGTTTAGGAACTCAAAGCCTCCTACGCCCCTTCATTCTTCCTCTTTTCCTTCCCATACGAACCGCTCCGTTACTAATTCCGACCGCCTCTCCTCGGTTTCTATTGCTCCCACCGCCACTACTAATTCCTCCAATGAAGATTTAGCCGTGCCGGTGGCCACAAATCGAACCGGCGAGGAGGTGATCATCAGCCCGCATGAGGAAAAACTATCCATGGGAGTAGTGAGCATTCAAACTCGCCAAACAAACCCATTGATCAAAGTCAATCAAGGTTCTCATTAA

Coding sequence (CDS)

ATGGCCAAATCCTCAAATTCCAAATCCAAACCTCACTTTTTCCTCTGCTGTTTTGGATACTCCGACAAGCTTCCCCGCTTTAAGCCCCTCAAATCCCCCGCCGGTCACCGTAAACGTCAGTTTTCTTGGTTTAGGAACTCAAAGCCTCCTACGCCCCTTCATTCTTCCTCTTTTCCTTCCCATACGAACCGCTCCGTTACTAATTCCGACCGCCTCTCCTCGGTTTCTATTGCTCCCACCGCCACTACTAATTCCTCCAATGAAGATTTAGCCGTGCCGGTGGCCACAAATCGAACCGGCGAGGAGGTGATCATCAGCCCGCATGAGGAAAAACTATCCATGGGAGTAGTGAGCATTCAAACTCGCCAAACAAACCCATTGATCAAAGTCAATCAAGGTTCTCATTAA

Protein sequence

MAKSSNSKSKPHFFLCCFGYSDKLPRFKPLKSPAGHRKRQFSWFRNSKPPTPLHSSSFPSHTNRSVTNSDRLSSVSIAPTATTNSSNEDLAVPVATNRTGEEVIISPHEEKLSMGVVSIQTRQTNPLIKVNQGSH*

Homology

[Close]

BLAST of CsaV3_7G030630 vs. NCBI nr
Match: XP_011659426.1 (uncharacterized protein LOC105436182 isoform X2 [Cucumis sativus] >KAE8646383.1 hypothetical protein Csa_016149 [Cucumis sativus])

HSP 1 Score: 269.2 bits (687), Expect = 1.9e-68
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MAKSSNSKSKPHFFLCCFGYSDKLPRFKPLKSPAGHRKRQFSWFRNSKPPTPLHSSSFPS 60
           MAKSSNSKSKPHFFLCCFGYSDKLPRFKPLKSPAGHRKRQFSWFRNSKPPTPLHSSSFPS
Sbjct: 1   MAKSSNSKSKPHFFLCCFGYSDKLPRFKPLKSPAGHRKRQFSWFRNSKPPTPLHSSSFPS 60

Query: 61  HTNRSVTNSDRLSSVSIAPTATTNSSNEDLAVPVATNRTGEEVIISPHEEKLSMGVVSIQ 120
           HTNRSVTNSDRLSSVSIAPTATTNSSNEDLAVPVATNRTGEEVIISPHEEKLSMGVVSIQ
Sbjct: 61  HTNRSVTNSDRLSSVSIAPTATTNSSNEDLAVPVATNRTGEEVIISPHEEKLSMGVVSIQ 120

Query: 121 TRQTNPLIKVNQGSH 136
           TRQTNPLIKVNQGSH
Sbjct: 121 TRQTNPLIKVNQGSH 135

[Close]

BLAST of CsaV3_7G030630 vs. NCBI nr
Match: XP_011659425.1 (uncharacterized protein LOC105436182 isoform X1 [Cucumis sativus])

HSP 1 Score: 219.5 bits (558), Expect = 1.7e-53
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MAKSSNSKSKPHFFLCCFGYSDKLPRFKPLKSPAGHRKRQFSWFRNSKPPTPLHSSSFPS 60
           MAKSSNSKSKPHFFLCCFGYSDKLPRFKPLKSPAGHRKRQFSWFRNSKPPTPLHSSSFPS
Sbjct: 1   MAKSSNSKSKPHFFLCCFGYSDKLPRFKPLKSPAGHRKRQFSWFRNSKPPTPLHSSSFPS 60

Query: 61  HTNRSVTNSDRLSSVSIAPTATTNSSNEDLAVPVATNRTGEEVIISPHEEK 112
           HTNRSVTNSDRLSSVSIAPTATTNSSNEDLAVPVATNRTGEEVIISPHE K
Sbjct: 61  HTNRSVTNSDRLSSVSIAPTATTNSSNEDLAVPVATNRTGEEVIISPHEVK 111

[Close]

BLAST of CsaV3_7G030630 vs. NCBI nr
Match: XP_008461362.1 (PREDICTED: uncharacterized protein At5g23160 [Cucumis melo])

HSP 1 Score: 182.2 bits (461), Expect = 3.0e-42
Identity = 97/113 (85.84%), Postives = 101/113 (89.38%), Query Frame = 0


Query: 1   MAKSSNSKSKPHFFLCCFGYSDKLPRFKPLKSPAGHRKRQFSWFRNSKPPTPLHSSSFPS 60
           MAKSSNSKSKPHFFL CFG+SDKL RFKP KSPAGHRKR FSWFRNSKPPTP+H SSFPS
Sbjct: 1   MAKSSNSKSKPHFFLSCFGFSDKLRRFKPPKSPAGHRKRPFSWFRNSKPPTPVH-SSFPS 60

Query: 61  HTNRSVTNSDRLSSVSIAPTATTNSSNEDL--AVPVATNRTGEEVIISPHEEK 112
           HTN SVTNSDRLSSVSIAPTAT+ SSNEDL  AVPVAT RTG+EVII PHE K
Sbjct: 61  HTNPSVTNSDRLSSVSIAPTATSKSSNEDLAVAVPVATKRTGQEVIIGPHEVK 112

[Close]

BLAST of CsaV3_7G030630 vs. NCBI nr
Match: KAA0058577.1 (uncharacterized protein E6C27_scaffold339G00440 [Cucumis melo var. makuwa] >TYK10377.1 uncharacterized protein E5676_scaffold459G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 179.1 bits (453), Expect = 2.6e-41
Identity = 95/111 (85.59%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 1   MAKSSNSKSKPHFFLCCFGYSDKLPRFKPLKSPAGHRKRQFSWFRNSKPPTPLHSSSFPS 60
           MAKSSNSKSKPHFFL CFG+SDKL RFKP KSPAGHRKR FSWFRNSKPP P+H SSFPS
Sbjct: 1   MAKSSNSKSKPHFFLSCFGFSDKLRRFKPPKSPAGHRKRPFSWFRNSKPPAPVH-SSFPS 60

Query: 61  HTNRSVTNSDRLSSVSIAPTATTNSSNEDLAV--PVATNRTGEEVIISPHE 110
           HTN SVTNSDRLSSVSIAPTAT+ SSNEDLAV  PVAT RTG+EVII PHE
Sbjct: 61  HTNPSVTNSDRLSSVSIAPTATSKSSNEDLAVAAPVATKRTGQEVIIGPHE 110

[Close]

BLAST of CsaV3_7G030630 vs. NCBI nr
Match: XP_038897220.1 (uncharacterized protein LOC120085350 isoform X2 [Benincasa hispida])

HSP 1 Score: 169.5 bits (428), Expect = 2.0e-38
Identity = 95/138 (68.84%), Postives = 108/138 (78.26%), Query Frame = 0


Query: 1   MAKSSNSKSKPHFFLCCFGYSDKLPRFKPLKSPAGHRKRQFSWFR-NSKPPTPLHSSSFP 60
           MAKSSNSKSKPHFFL CFG+S KL RFKPLKS AG RKR FSW   +SKPP P+H SS P
Sbjct: 1   MAKSSNSKSKPHFFLSCFGFSGKLRRFKPLKSSAGQRKRPFSWMSFHSKPPPPVH-SSLP 60

Query: 61  SHTNRSVTNSDRLSSVSIAPTATTNSSNED--LAVPVATNRTGEEVIISPHEEKLSMGVV 120
              NRS+ +SDRLSS+SIAPTAT+ SSNED  +AV V TNRTG+E+II   E+K S  VV
Sbjct: 61  VQINRSIPDSDRLSSISIAPTATSKSSNEDFAVAVSVVTNRTGDELIIGQQEKKSSKKVV 120

Query: 121 SIQTRQTNPLIKVNQGSH 136
           + QTR+ NP IKVNQGSH
Sbjct: 121 NNQTRERNPPIKVNQGSH 137

[Close]

BLAST of CsaV3_7G030630 vs. ExPASy TrEMBL
Match: A0A0A0K6H3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420760 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 8.3e-54
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MAKSSNSKSKPHFFLCCFGYSDKLPRFKPLKSPAGHRKRQFSWFRNSKPPTPLHSSSFPS 60
           MAKSSNSKSKPHFFLCCFGYSDKLPRFKPLKSPAGHRKRQFSWFRNSKPPTPLHSSSFPS
Sbjct: 1   MAKSSNSKSKPHFFLCCFGYSDKLPRFKPLKSPAGHRKRQFSWFRNSKPPTPLHSSSFPS 60

Query: 61  HTNRSVTNSDRLSSVSIAPTATTNSSNEDLAVPVATNRTGEEVIISPHEEK 112
           HTNRSVTNSDRLSSVSIAPTATTNSSNEDLAVPVATNRTGEEVIISPHE K
Sbjct: 61  HTNRSVTNSDRLSSVSIAPTATTNSSNEDLAVPVATNRTGEEVIISPHEVK 111

[Close]

BLAST of CsaV3_7G030630 vs. ExPASy TrEMBL
Match: A0A1S3CFR9 (uncharacterized protein At5g23160 OS=Cucumis melo OX=3656 GN=LOC103499966 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.5e-42
Identity = 97/113 (85.84%), Postives = 101/113 (89.38%), Query Frame = 0


Query: 1   MAKSSNSKSKPHFFLCCFGYSDKLPRFKPLKSPAGHRKRQFSWFRNSKPPTPLHSSSFPS 60
           MAKSSNSKSKPHFFL CFG+SDKL RFKP KSPAGHRKR FSWFRNSKPPTP+H SSFPS
Sbjct: 1   MAKSSNSKSKPHFFLSCFGFSDKLRRFKPPKSPAGHRKRPFSWFRNSKPPTPVH-SSFPS 60

Query: 61  HTNRSVTNSDRLSSVSIAPTATTNSSNEDL--AVPVATNRTGEEVIISPHEEK 112
           HTN SVTNSDRLSSVSIAPTAT+ SSNEDL  AVPVAT RTG+EVII PHE K
Sbjct: 61  HTNPSVTNSDRLSSVSIAPTATSKSSNEDLAVAVPVATKRTGQEVIIGPHEVK 112

[Close]

BLAST of CsaV3_7G030630 vs. ExPASy TrEMBL
Match: A0A5D3CEJ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00190 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.2e-41
Identity = 95/111 (85.59%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 1   MAKSSNSKSKPHFFLCCFGYSDKLPRFKPLKSPAGHRKRQFSWFRNSKPPTPLHSSSFPS 60
           MAKSSNSKSKPHFFL CFG+SDKL RFKP KSPAGHRKR FSWFRNSKPP P+H SSFPS
Sbjct: 1   MAKSSNSKSKPHFFLSCFGFSDKLRRFKPPKSPAGHRKRPFSWFRNSKPPAPVH-SSFPS 60

Query: 61  HTNRSVTNSDRLSSVSIAPTATTNSSNEDLAV--PVATNRTGEEVIISPHE 110
           HTN SVTNSDRLSSVSIAPTAT+ SSNEDLAV  PVAT RTG+EVII PHE
Sbjct: 61  HTNPSVTNSDRLSSVSIAPTATSKSSNEDLAVAAPVATKRTGQEVIIGPHE 110

[Close]

BLAST of CsaV3_7G030630 vs. ExPASy TrEMBL
Match: A0A6J1JV00 (uncharacterized protein LOC111488090 OS=Cucurbita maxima OX=3661 GN=LOC111488090 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 7.8e-20
Identity = 68/114 (59.65%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 1   MAKSSNSKSKPHFFLCCFGYSDKLPRFKPLKSPAGHRKRQFSWFR-NSKPPTPLHSSSFP 60
           MAKS NSKS PH FLCCFG+S K  RFKPLK  A HRK   SW R +SK P P  S  F 
Sbjct: 1   MAKSPNSKSNPHPFLCCFGFSGKHRRFKPLKPAAAHRKGPISWMRFHSKQPPPSPSVQF- 60

Query: 61  SHTNRSVTNSDRLSSVSIAPTATTNSSNED--LAVPVATNRTGEEVIISPHEEK 112
              N S T+SDRLSS SI+PTA  N SNED  +AVPVATNR G E++  P   K
Sbjct: 61  ---NLSNTDSDRLSSKSISPTAAFN-SNEDFTVAVPVATNRAGGEIVTRPENVK 109

[Close]

BLAST of CsaV3_7G030630 vs. ExPASy TrEMBL
Match: A0A6J1GRB9 (uncharacterized protein LOC111456417 OS=Cucurbita moschata OX=3662 GN=LOC111456417 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.7e-19
Identity = 68/114 (59.65%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 1   MAKSSNSKSKPHFFLCCFGYSDKLPRFKPLKSPAGHRKRQFSWFR-NSKPPTPLHSSSFP 60
           MAKS NSKS PH FLCCFG+S K  RFKPLK  A HRK   SW R +SK P P  S S  
Sbjct: 1   MAKSPNSKSNPHPFLCCFGFSGKHRRFKPLKPAAAHRKGPISWMRFHSKQPPPSPSPSV- 60

Query: 61  SHTNRSVTNSDRLSSVSIAPTATTNSSNED--LAVPVATNRTGEEVIISPHEEK 112
              N S T+SDRLSS SI+PTA  N SNED  +AVPVATNR G E++  P   K
Sbjct: 61  -QFNLSNTDSDRLSSKSISPTAAFN-SNEDFTVAVPVATNRAGGEIVTRPENVK 111

The following BLAST results are available for this feature:

BLAST of CsaV3_7G030630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659426.1	1.9e-68	100.00	uncharacterized protein LOC105436182 isoform X2 [Cucumis sativus] >KAE8646383.1 ...	[more]
XP_011659425.1	1.7e-53	99.10	uncharacterized protein LOC105436182 isoform X1 [Cucumis sativus]	[more]
XP_008461362.1	3.0e-42	85.84	PREDICTED: uncharacterized protein At5g23160 [Cucumis melo]	[more]
KAA0058577.1	2.6e-41	85.59	uncharacterized protein E6C27_scaffold339G00440 [Cucumis melo var. makuwa] >TYK1...	[more]
XP_038897220.1	2.0e-38	68.84	uncharacterized protein LOC120085350 isoform X2 [Benincasa hispida]	[more]

BLAST of CsaV3_7G030630 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G030630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6H3	8.3e-54	99.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420760 PE=4 SV=1	[more]
A0A1S3CFR9	1.5e-42	85.84	uncharacterized protein At5g23160 OS=Cucumis melo OX=3656 GN=LOC103499966 PE=4 S...	[more]
A0A5D3CEJ0	1.2e-41	85.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1JV00	7.8e-20	59.65	uncharacterized protein LOC111488090 OS=Cucurbita maxima OX=3661 GN=LOC111488090...	[more]
A0A6J1GRB9	1.7e-19	59.65	uncharacterized protein LOC111456417 OS=Cucurbita moschata OX=3662 GN=LOC1114564...	[more]

BLAST of CsaV3_7G030630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G030630.1	CsaV3_7G030630.1	mRNA