CsaV3_7G023850 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G023850
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Serine-rich protein-related, putative
Location	chr7: 12909740 .. 12910496 (-)
RNA-Seq Expression	CsaV3_7G023850
Synteny	CsaV3_7G023850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAAAGAGCAAAAAATGAGGAGTTGAGTACGAATGTCAAAATTTGCATACATTTCTCAAACATCTCCTTTCTCCCCATATTAATAATATTTTTGGTTTCAAGCCCTAATAACTCCTCCATCTTAACTTCTAACTAAAATCTAATTTATTATCCCCCCCAATGGATAATAAAGCAGATCACAGAGCTCCAAGGCCAAACGATAGAAACAATCACAATAACAATCACAATCACAATCACCATCACCATCACAAAATGGCTTTCACAGACTTAAATTTAGAAGACCTTAAGCAGAATCCTCGCATCCTCGTCTCTCCTTCCCCACCATCCTCCATCGCCGCCAGGACTCCCTCCTCTGCTAAAGCCAATTGTCTCTGTTCTCCAACCACTCACATTGGCTCCTTCCGTTGCCGGCACCACCGGCATTCCGGTATGATCCGCGGCGGCTCCGTTGGCTCTAATCTCTCCGATTTGACCCGTAAACCTACCGAAATTGTGGGATCTTTTTCGCCTTGACTTCACTTGCCTTGCCTTTTTCCTTCTCTTTTCGAGGCGGCTTTGTTTTGTTTCTTTGTTCCTTTGTCTTCCTACTTCCTCTTCACTTGGTGATGCAAAAATTTGGGGAATGAAGGGAGGATTTCGTTTTTTATTTGTTTCTTTTTCTCATTACGTTGTTCAATCTCTGTATTTGTAAAGGAAGATGGTGACGATTATCTTTTTCTTTTCCTACTTTTATGATTCATGCAAAAATAGCAAAAAA

mRNA sequence

ATGGATAATAAAGCAGATCACAGAGCTCCAAGGCCAAACGATAGAAACAATCACAATAACAATCACAATCACAATCACCATCACCATCACAAAATGGCTTTCACAGACTTAAATTTAGAAGACCTTAAGCAGAATCCTCGCATCCTCGTCTCTCCTTCCCCACCATCCTCCATCGCCGCCAGGACTCCCTCCTCTGCTAAAGCCAATTGTCTCTGTTCTCCAACCACTCACATTGGCTCCTTCCGTTGCCGGCACCACCGGCATTCCGGTATGATCCGCGGCGGCTCCGTTGGCTCTAATCTCTCCGATTTGACCCGTAAACCTACCGAAATTGTGGGATCTTTTTCGCCTTGA

Coding sequence (CDS)

ATGGATAATAAAGCAGATCACAGAGCTCCAAGGCCAAACGATAGAAACAATCACAATAACAATCACAATCACAATCACCATCACCATCACAAAATGGCTTTCACAGACTTAAATTTAGAAGACCTTAAGCAGAATCCTCGCATCCTCGTCTCTCCTTCCCCACCATCCTCCATCGCCGCCAGGACTCCCTCCTCTGCTAAAGCCAATTGTCTCTGTTCTCCAACCACTCACATTGGCTCCTTCCGTTGCCGGCACCACCGGCATTCCGGTATGATCCGCGGCGGCTCCGTTGGCTCTAATCTCTCCGATTTGACCCGTAAACCTACCGAAATTGTGGGATCTTTTTCGCCTTGA

Protein sequence

MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAARTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP*

Homology

[Close]

BLAST of CsaV3_7G023850 vs. NCBI nr
Match: KGN44385.1 (hypothetical protein Csa_015645 [Cucumis sativus])

HSP 1 Score: 236.5 bits (602), Expect = 1.2e-58
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60
           MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA
Sbjct: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60

Query: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 118
           RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP
Sbjct: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 117

[Close]

BLAST of CsaV3_7G023850 vs. NCBI nr
Match: KAG7024984.1 (hypothetical protein SDJN02_13804, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.3 bits (360), Expect = 1.4e-30
Identity = 75/117 (64.10%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60
           MD+K DHRAPRP DRNN N        HHHK  FTD +LED KQ   +L S SP  S+A 
Sbjct: 1   MDHKPDHRAPRPIDRNNPN--------HHHKTQFTDFDLEDFKQGTNLLAS-SPSRSLAP 60

Query: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 118
           + PSSAKA+CLCSPTTHIGSFRCRHHRH+GM+RG SVGSNLS+L  K T+++ S+SP
Sbjct: 61  KAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP 108

[Close]

BLAST of CsaV3_7G023850 vs. NCBI nr
Match: KAA0048240.1 (putative PGPS/D10 protein [Cucumis melo var. makuwa] >TYK07880.1 putative PGPS/D10 protein [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 3.9e-30
Identity = 71/87 (81.61%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 32  MAFTDLNLEDLK-QNPRILVSPSPPSSIAARTPSSAKANCLCSPTTHIGSFRCRHHRHSG 91
           MA T+LNL DLK  N  +LVSPSPPS+ A +TPSSAKANCLCSPTTHIGSFRCRHHRH+G
Sbjct: 1   MAITELNLADLKHNNHHLLVSPSPPST-ATKTPSSAKANCLCSPTTHIGSFRCRHHRHAG 60

Query: 92  MIRGGSVGSNLSDLTRKPTEIVGSFSP 118
           MIRGGSVGSNLSDL RKPTEI+G FSP
Sbjct: 61  MIRGGSVGSNLSDLARKPTEIMGPFSP 86

[Close]

BLAST of CsaV3_7G023850 vs. NCBI nr
Match: KAG6607735.1 (hypothetical protein SDJN03_01077, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037310.1 hypothetical protein SDJN02_00935, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.5 bits (319), Expect = 7.7e-26
Identity = 71/114 (62.28%), Postives = 86/114 (75.44%), Query Frame = 0


Query: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60
           MD+K DHRAPRP         H H+  HH+K+ FTD +LEDLK++PR+LVSPS  SS   
Sbjct: 1   MDHKPDHRAPRP--------THRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQK 60

Query: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHS-GMIRGGSVGSNLSDLTRKPTEIVG 114
            +P +AK +CLCSPTTHIGSFRCRHHR S G++RGGSVGSNLSDL RK +E +G
Sbjct: 61  VSP-AAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSSEFMG 105

[Close]

BLAST of CsaV3_7G023850 vs. NCBI nr
Match: XP_010103953.1 (uncharacterized protein LOC21403113 [Morus notabilis] >EXB97656.1 hypothetical protein L484_020205 [Morus notabilis])

HSP 1 Score: 94.4 bits (233), Expect = 7.2e-16
Identity = 56/114 (49.12%), Postives = 68/114 (59.65%), Query Frame = 0


Query: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60
           MD K + R+P+    NN N           K+   D+NL +LK+   +L SP   +  A 
Sbjct: 1   MDEKVEQRSPQKIKENNMN----------FKLKIPDINLNELKKQTHLLASPR--AQRAV 60

Query: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGS 115
              SS + NCLCSPTTH GSFRCRHHR S M+RGGSVGSNLS+L RKP  I  S
Sbjct: 61  TKSSSTRWNCLCSPTTHAGSFRCRHHRSSCMLRGGSVGSNLSELARKPGAISDS 102

[Close]

BLAST of CsaV3_7G023850 vs. ExPASy TrEMBL
Match: A0A0A0K3W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 5.7e-59
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60
           MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA
Sbjct: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60

Query: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 118
           RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP
Sbjct: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 117

[Close]

BLAST of CsaV3_7G023850 vs. ExPASy TrEMBL
Match: A0A5A7TYF3 (Putative PGPS/D10 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70465G00010 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.9e-30
Identity = 71/87 (81.61%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 32  MAFTDLNLEDLK-QNPRILVSPSPPSSIAARTPSSAKANCLCSPTTHIGSFRCRHHRHSG 91
           MA T+LNL DLK  N  +LVSPSPPS+ A +TPSSAKANCLCSPTTHIGSFRCRHHRH+G
Sbjct: 1   MAITELNLADLKHNNHHLLVSPSPPST-ATKTPSSAKANCLCSPTTHIGSFRCRHHRHAG 60

Query: 92  MIRGGSVGSNLSDLTRKPTEIVGSFSP 118
           MIRGGSVGSNLSDL RKPTEI+G FSP
Sbjct: 61  MIRGGSVGSNLSDLARKPTEIMGPFSP 86

[Close]

BLAST of CsaV3_7G023850 vs. ExPASy TrEMBL
Match: W9SBP1 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020205 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.5e-16
Identity = 56/114 (49.12%), Postives = 68/114 (59.65%), Query Frame = 0


Query: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60
           MD K + R+P+    NN N           K+   D+NL +LK+   +L SP   +  A 
Sbjct: 1   MDEKVEQRSPQKIKENNMN----------FKLKIPDINLNELKKQTHLLASPR--AQRAV 60

Query: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGS 115
              SS + NCLCSPTTH GSFRCRHHR S M+RGGSVGSNLS+L RKP  I  S
Sbjct: 61  TKSSSTRWNCLCSPTTHAGSFRCRHHRSSCMLRGGSVGSNLSELARKPGAISDS 102

[Close]

BLAST of CsaV3_7G023850 vs. ExPASy TrEMBL
Match: A0A5N6L3X1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_026425 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.6e-15
Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 31  KMAFTDLNLEDLKQNPRILVSPSPPSSIAARTPSSAKANCLCSPTTHIGSFRCRHHRHSG 90
           K+   ++NL+D+K++P +LVSPS   + A +  S    NCLCSPTTH+GSFRCRHHR+S 
Sbjct: 19  KINIPEINLDDIKKHPHLLVSPSLKETKAKQ--SGRWKNCLCSPTTHVGSFRCRHHRNSS 78

Query: 91  MIRGGSVGSNLSDLTRK 108
           M RGGSVGS LS+L  K
Sbjct: 79  MHRGGSVGSKLSELAHK 93

[Close]

BLAST of CsaV3_7G023850 vs. ExPASy TrEMBL
Match: A0A6A2W940 (Farnesyl diphosphate synthase 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117056pilonHSYRG01009 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 8.6e-15
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 35  TDLNLEDLKQNPRILVSPSPPSSIAARTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRG 94
           T+L+LE++K++P + VSP       A TP S ++NCLCSPTTH GSFRCRHHR SGM RG
Sbjct: 19  TELSLEEIKKHPTVHVSPRAAKVNKASTP-SGRSNCLCSPTTHAGSFRCRHHRVSGMSRG 78

Query: 95  GSVGSNLSDL 105
           GS+GSNLS+L
Sbjct: 79  GSIGSNLSNL 87

[Close]

BLAST of CsaV3_7G023850 vs. TAIR 10
Match: AT5G55980.1 (serine-rich protein-related )

HSP 1 Score: 60.8 bits (146), Expect = 8.2e-10
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 65  SAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDL 105
           S + NCLCSPTTH GSFRCR+HR   + R GS+GSNL+ L
Sbjct: 59  STRLNCLCSPTTHAGSFRCRYHRVDSLTRAGSIGSNLAVL 98

[Close]

BLAST of CsaV3_7G023850 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 58.5 bits (140), Expect = 4.1e-09
Identity = 35/79 (44.30%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 36  DLNLEDLKQNPRILVSP-------SPPSSIAARTPSSAKANCLCSPTTHIGSFRCRHHRH 95
           D++ +D+K+     +SP           S+     SS + NCLC+PTTH GSFRCR+HR 
Sbjct: 24  DVSQDDIKRQEAYNMSPRVRRGGGGGGGSVGMSKSSSVRQNCLCAPTTHPGSFRCRYHRR 83

Query: 96  S---GMIRGGSVGSNLSDL 105
           +   GM RG SV SNLS L
Sbjct: 84  NAGLGMSRGTSVPSNLSML 102

[Close]

BLAST of CsaV3_7G023850 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 1.1e-06
Identity = 26/52 (50.00%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 60  ARTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSV-GSNLSDLTRKPTE 111
           +R  S  K NCLCSPTTH GSFRCR HR   + R  S+  ++L D   KP +
Sbjct: 34  SRQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTKSIEAASLLDSPPKPAD 85

[Close]

BLAST of CsaV3_7G023850 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 50.4 bits (119), Expect = 1.1e-06
Identity = 26/52 (50.00%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 60  ARTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSV-GSNLSDLTRKPTE 111
           +R  S  K NCLCSPTTH GSFRCR HR   + R  S+  ++L D   KP +
Sbjct: 34  SRQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTKSIEAASLLDSPPKPAD 85

The following BLAST results are available for this feature:

BLAST of CsaV3_7G023850 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44385.1	1.2e-58	100.00	hypothetical protein Csa_015645 [Cucumis sativus]	[more]
KAG7024984.1	1.4e-30	64.10	hypothetical protein SDJN02_13804, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0048240.1	3.9e-30	81.61	putative PGPS/D10 protein [Cucumis melo var. makuwa] >TYK07880.1 putative PGPS/D...	[more]
KAG6607735.1	7.7e-26	62.28	hypothetical protein SDJN03_01077, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_010103953.1	7.2e-16	49.12	uncharacterized protein LOC21403113 [Morus notabilis] >EXB97656.1 hypothetical p...	[more]

BLAST of CsaV3_7G023850 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G023850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3W3	5.7e-59	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1	[more]
A0A5A7TYF3	1.9e-30	81.61	Putative PGPS/D10 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
W9SBP1	3.5e-16	49.12	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020205 PE=4 SV=1	[more]
A0A5N6L3X1	6.6e-15	57.14	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_026425 PE=4 SV=1	[more]
A0A6A2W940	8.6e-15	62.86	Farnesyl diphosphate synthase 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117...	[more]

BLAST of CsaV3_7G023850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55980.1	8.2e-10	65.00	serine-rich protein-related	[more]
AT3G13227.1	4.1e-09	44.30	serine-rich protein-related	[more]
AT1G67910.1	1.1e-06	50.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67910.2	1.1e-06	50.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..69
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 62..104
None	No IPR available	PANTHER	PTHR33132:SF73	SERINE-RICH PROTEIN-LIKE PROTEIN	coord: 62..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G023850.1	CsaV3_7G023850.1	mRNA