CsaV3_7G023850 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GCAAAGAGCAAAAAATGAGGAGTTGAGTACGAATGTCAAAATTTGCATACATTTCTCAAACATCTCCTTTCTCCCCATATTAATAATATTTTTGGTTTCAAGCCCTAATAACTCCTCCATCTTAACTTCTAACTAAAATCTAATTTATTATCCCCCCCAATGGATAATAAAGCAGATCACAGAGCTCCAAGGCCAAACGATAGAAACAATCACAATAACAATCACAATCACAATCACCATCACCATCACAAAATGGCTTTCACAGACTTAAATTTAGAAGACCTTAAGCAGAATCCTCGCATCCTCGTCTCTCCTTCCCCACCATCCTCCATCGCCGCCAGGACTCCCTCCTCTGCTAAAGCCAATTGTCTCTGTTCTCCAACCACTCACATTGGCTCCTTCCGTTGCCGGCACCACCGGCATTCCGGTATGATCCGCGGCGGCTCCGTTGGCTCTAATCTCTCCGATTTGACCCGTAAACCTACCGAAATTGTGGGATCTTTTTCGCCTTGACTTCACTTGCCTTGCCTTTTTCCTTCTCTTTTCGAGGCGGCTTTGTTTTGTTTCTTTGTTCCTTTGTCTTCCTACTTCCTCTTCACTTGGTGATGCAAAAATTTGGGGAATGAAGGGAGGATTTCGTTTTTTATTTGTTTCTTTTTCTCATTACGTTGTTCAATCTCTGTATTTGTAAAGGAAGATGGTGACGATTATCTTTTTCTTTTCCTACTTTTATGATTCATGCAAAAATAGCAAAAAA ATGGATAATAAAGCAGATCACAGAGCTCCAAGGCCAAACGATAGAAACAATCACAATAACAATCACAATCACAATCACCATCACCATCACAAAATGGCTTTCACAGACTTAAATTTAGAAGACCTTAAGCAGAATCCTCGCATCCTCGTCTCTCCTTCCCCACCATCCTCCATCGCCGCCAGGACTCCCTCCTCTGCTAAAGCCAATTGTCTCTGTTCTCCAACCACTCACATTGGCTCCTTCCGTTGCCGGCACCACCGGCATTCCGGTATGATCCGCGGCGGCTCCGTTGGCTCTAATCTCTCCGATTTGACCCGTAAACCTACCGAAATTGTGGGATCTTTTTCGCCTTGA ATGGATAATAAAGCAGATCACAGAGCTCCAAGGCCAAACGATAGAAACAATCACAATAACAATCACAATCACAATCACCATCACCATCACAAAATGGCTTTCACAGACTTAAATTTAGAAGACCTTAAGCAGAATCCTCGCATCCTCGTCTCTCCTTCCCCACCATCCTCCATCGCCGCCAGGACTCCCTCCTCTGCTAAAGCCAATTGTCTCTGTTCTCCAACCACTCACATTGGCTCCTTCCGTTGCCGGCACCACCGGCATTCCGGTATGATCCGCGGCGGCTCCGTTGGCTCTAATCTCTCCGATTTGACCCGTAAACCTACCGAAATTGTGGGATCTTTTTCGCCTTGA MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAARTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP* Homology
BLAST of CsaV3_7G023850 vs. NCBI nr
Match: KGN44385.1 (hypothetical protein Csa_015645 [Cucumis sativus]) HSP 1 Score: 236.5 bits (602), Expect = 1.2e-58 Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0
BLAST of CsaV3_7G023850 vs. NCBI nr
Match: KAG7024984.1 (hypothetical protein SDJN02_13804, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 143.3 bits (360), Expect = 1.4e-30 Identity = 75/117 (64.10%), Postives = 88/117 (75.21%), Query Frame = 0
BLAST of CsaV3_7G023850 vs. NCBI nr
Match: KAA0048240.1 (putative PGPS/D10 protein [Cucumis melo var. makuwa] >TYK07880.1 putative PGPS/D10 protein [Cucumis melo var. makuwa]) HSP 1 Score: 141.7 bits (356), Expect = 3.9e-30 Identity = 71/87 (81.61%), Postives = 77/87 (88.51%), Query Frame = 0
BLAST of CsaV3_7G023850 vs. NCBI nr
Match: KAG6607735.1 (hypothetical protein SDJN03_01077, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037310.1 hypothetical protein SDJN02_00935, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 127.5 bits (319), Expect = 7.7e-26 Identity = 71/114 (62.28%), Postives = 86/114 (75.44%), Query Frame = 0
BLAST of CsaV3_7G023850 vs. NCBI nr
Match: XP_010103953.1 (uncharacterized protein LOC21403113 [Morus notabilis] >EXB97656.1 hypothetical protein L484_020205 [Morus notabilis]) HSP 1 Score: 94.4 bits (233), Expect = 7.2e-16 Identity = 56/114 (49.12%), Postives = 68/114 (59.65%), Query Frame = 0
BLAST of CsaV3_7G023850 vs. ExPASy TrEMBL
Match: A0A0A0K3W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1) HSP 1 Score: 236.5 bits (602), Expect = 5.7e-59 Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0
BLAST of CsaV3_7G023850 vs. ExPASy TrEMBL
Match: A0A5A7TYF3 (Putative PGPS/D10 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70465G00010 PE=4 SV=1) HSP 1 Score: 141.7 bits (356), Expect = 1.9e-30 Identity = 71/87 (81.61%), Postives = 77/87 (88.51%), Query Frame = 0
BLAST of CsaV3_7G023850 vs. ExPASy TrEMBL
Match: W9SBP1 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020205 PE=4 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 3.5e-16 Identity = 56/114 (49.12%), Postives = 68/114 (59.65%), Query Frame = 0
BLAST of CsaV3_7G023850 vs. ExPASy TrEMBL
Match: A0A5N6L3X1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_026425 PE=4 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 6.6e-15 Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 0
BLAST of CsaV3_7G023850 vs. ExPASy TrEMBL
Match: A0A6A2W940 (Farnesyl diphosphate synthase 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117056pilonHSYRG01009 PE=4 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 8.6e-15 Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = 0
BLAST of CsaV3_7G023850 vs. TAIR 10
Match: AT5G55980.1 (serine-rich protein-related ) HSP 1 Score: 60.8 bits (146), Expect = 8.2e-10 Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 0
BLAST of CsaV3_7G023850 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related ) HSP 1 Score: 58.5 bits (140), Expect = 4.1e-09 Identity = 35/79 (44.30%), Postives = 46/79 (58.23%), Query Frame = 0
BLAST of CsaV3_7G023850 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 50.4 bits (119), Expect = 1.1e-06 Identity = 26/52 (50.00%), Postives = 32/52 (61.54%), Query Frame = 0
BLAST of CsaV3_7G023850 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). ) HSP 1 Score: 50.4 bits (119), Expect = 1.1e-06 Identity = 26/52 (50.00%), Postives = 32/52 (61.54%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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