CsaV3_7G023430 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G023430
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr7: 12483532 .. 12486055 (+)
RNA-Seq Expression	CsaV3_7G023430
Synteny	CsaV3_7G023430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGTTGAGCTCTCCCGCCAAAAGAGCACAAATAAAATGTTTGCTTTCCCTTTACATCCTTACTTTGTGATTCTTGTAGAAACCAAATTACAAAATATCAACAAAAAAATTATAAAATCACTTTGGAGCTCTATAAGTGTAAAATGGCACTTCTCTCCAGCTAAAAGTAGTTCAGGAGGGATTGTAATCATGTGGGATGACATTAGATTTAAAGTGGTCGATTATCTTGTAAAAAAATTCACTCTCTCAATTGAAATAACCTATCCTAATGATTCAAACAATTTAAATTGGTGGCTTACTGCAGTCTATGGCCCTTCTAAAAGAGAAAATAGAGGAGATTTCTGGATTGAGCTTCATGAGATTAAATCAATTTGCCTTCCAAGATGGCTTATGGGTGGGGATTTTAATATTGTTAGTGTTGGCTTTTTCGCCCTTAATCTCAAATTAATTTATTTTAATTATTCAATTAATTTATGTTTTGATGATAACAAATCTGATTTTTTTTATTGACAATTTTATTAATTTGAATAGACCATATCGTAGAGCTTGGAAAAATGATTCTAACGCCTCTTGAATCACCCAAATCGAAGTTCAAATGAAGAAAATATTGCTAAAAGAAGCTTAACGAAAAATACCCGAGATGGTGACGTGGCGACCAAGCATTCAATTTGAACCAATTAGAGAAAGCCACTTGGAGCAATGAAGGAGTAACAAATGTGGCTTTTTGTTATGTTTTATTGGCTTTTATAAAGAAAATGAATTTAAAAGAAAATGATTTTAATATTATTATTTTTTCTTGTGTCTAACGGCTAGTTTTTTTAAAAGATGGTGAAGTTGCTTTATTGATTTCTTTTTAAACAAATATTTTGAAAAGACATATTATTATATTATTATTTGTATTGTGTCTAACGGCTAATTAAGTTTAAATCTCAACCATTCATTTTTCTTTTACTTATATCTAATGACCCAAATGATTTTGAATTTATCTTTCCTCTCTTTTTAAATATCACTTCAATTTAAAAGACAACATCATTAAATCTTTACAATCCTCAAGCAAAAAGCCAACATTGTTATTCTCTCTAAAGCTTCCAATTTTTATTCTTTTCATCTTATTCTTGAGAGCTTCTTATTGTATTGTGAGGATTAAATTTGTGAGCTTCAAATTGTATACTCACTCTTTTAGAGAGTTTTCTTTTGTGTGATTTAAAAACTTCAACATATTGTAACGGTTGGATCCTAACCCGTGGAAAGGATCGGGTTTGCTCTTGAACCCGAAAAAGGAGCAAGAATCGGTTCGGCTCAAATCCGTGGAAAGAGTCCAAAGAAGATTTTCAATCAAAATCCCAAGAGGTGCTTGGGAAAGTGGATGTAGGTTGAGTTTAACCGAACCACTATAAAATTACGGTGTCTTCTTCTCTAACTCTTTTCTAATTATTTTTTAATTTAATTTTAGTTACATATTCTTATTGGTTGAGTTTGATTGCATACTTCCATTCATATTTTTTATCAATCTTGTTATTTAACAAAGTTTACAAAGTTCTTTATTTAAATTTTAAAAATATCTAATTAGTTGATTTTACTTTTTATTTGTCAAAAAGTTTATTTAAACCCTATTCACCCCCTCTAGGGTTGCCATACCGATCCAATAGTTAGATAGCATTCAGAATCTACAGACAAAAGTATTACATTCTCTTGTATGAATAATTTCAATACTTTCATCTCGGGATGTGATTTCATTGATCCTCCCTTAATAAATGCCAAATTTACTTGGTCAAATCTCAAAGCTCAGCCCATTCTTTCAAGACTCGACATATTTCTATACACTCCAAATTGGGAAATTCTATTTGAACCACACTTCTCCAAAATGCTCCCTAGAGTAACATCAGACCATTTTTCCATTGCTCTCGAGTCCAATAGTCTAAAGTGGGGCCCTTCTCCTTTCAGATTCACAAACTCCTTTCTCAAAGAAGTCTCTTTCAAACAAAACATTAAGGTATGGTGGAAAAACACTGCTCAAGTTGGTCACCCGGGTTACTCCTTTATGGGGAGGCTCAAACAACTTTCTTATACAATAAAAAAATTGGAGTAAAAGCCTAAAAGAATCTAACGAAGAAGAAATACAAACTTTATTGAATGAGCTTGAGCACATAGACAATTTGGAAGCTGATAGCAATATTACCGATTTGCACATTACTCGCAGAGCATCCATCAAAACTGATCTGTGTCAAATGCCCTTTAAAGAAGCTCAAATATGGGCTAAAATATGCAAACGGTTGTGGAACCTGGAAGGGGGTGAAAACTCTGCTTTTTATCATAAAATCTGCTCTACTAGACAAAGAAGAAGCTTCATCTCAAGCATTTCTACCGCACAAGGAGTTCTTTGTAGTTCTGATGTGGATATAGAGAAAACTCTCATTGATCATTTTAGGGAGATCTATACTGAAAAGAAAAGAGATCTTTGGCTCATTGACAATCTTCCCTGGATTCCTATTAAAACGACAACTCATAAGGATCTCTGCAAAAT

mRNA sequence

AGGGTTGAGCTCTCCCGCCAAAAGAGCACAAATAAAATGTTTGCTTTCCCTTTACATCCTTACTTTGTGATTCTTGTAGAAACCAAATTACAAAATATCAACAAAAAAATTATAAAATCACTTTGGAGCTCTATAAGTGTAAAATGGCACTTCTCTCCAGCTAAAAGTAGTTCAGGAGGGATTGTAATCATGTGGGATGACATTAGATTTAAAGTGGTCGATTATCTTGTAAAAAAATTCACTCTCTCAATTGAAATAACCTATCCTAATGATTCAAACAATTTAAATTGGTGGCTTACTGCAGTCTATGGCCCTTCTAAAAGAGAAAATAGAGGAGATTTCTGGATTGAGCTTCATGAGATTAAATCAATTTGCCTTCCAAGATGGCTTATGGAATCTAACGAAGAAGAAATACAAACTTTATTGAATGAGCTTGAGCACATAGACAATTTGGAAGCTGATAGCAATATTACCGATTTGCACATTACTCGCAGAGCATCCATCAAAACTGATCTGTGTCAAATGCCCTTTAAAGAAGCTCAAATATGGGCTAAAATATGCAAACGGTTGTGGAACCTGGAAGGGGGTGAAAACTCTGCTTTTTATCATAAAATCTGCTCTACTAGACAAAGAAGAAGCTTCATCTCAAGCATTTCTACCGCACAAGGAGTTCTTTGTAGTTCTGATGTGGATATAGAGAAAACTCTCATTGATCATTTTAGGGAGATCTATACTGAAAAGAAAAGAGATCTTTGGCTCATTGACAATCTTCCCTGGATTCCTATTAAAACGACAACTCATAAGGATCTCTGCAAAAT

Coding sequence (CDS)

AGGGTTGAGCTCTCCCGCCAAAAGAGCACAAATAAAATGTTTGCTTTCCCTTTACATCCTTACTTTGTGATTCTTGTAGAAACCAAATTACAAAATATCAACAAAAAAATTATAAAATCACTTTGGAGCTCTATAAGTGTAAAATGGCACTTCTCTCCAGCTAAAAGTAGTTCAGGAGGGATTGTAATCATGTGGGATGACATTAGATTTAAAGTGGTCGATTATCTTGTAAAAAAATTCACTCTCTCAATTGAAATAACCTATCCTAATGATTCAAACAATTTAAATTGGTGGCTTACTGCAGTCTATGGCCCTTCTAAAAGAGAAAATAGAGGAGATTTCTGGATTGAGCTTCATGAGATTAAATCAATTTGCCTTCCAAGATGGCTTATGGAATCTAACGAAGAAGAAATACAAACTTTATTGAATGAGCTTGAGCACATAGACAATTTGGAAGCTGATAGCAATATTACCGATTTGCACATTACTCGCAGAGCATCCATCAAAACTGATCTGTGTCAAATGCCCTTTAAAGAAGCTCAAATATGGGCTAAAATATGCAAACGGTTGTGGAACCTGGAAGGGGGTGAAAACTCTGCTTTTTATCATAAAATCTGCTCTACTAGACAAAGAAGAAGCTTCATCTCAAGCATTTCTACCGCACAAGGAGTTCTTTGTAGTTCTGATGTGGATATAGAGAAAACTCTCATTGATCATTTTAGGGAGATCTATACTGAAAAGAAAAGAGATCTTTGGCTCATTGACAATCTTCCCTGGATTCCTATTAAAACGACAACTCATAAGGATCTCTGCAAAAT

Protein sequence

RVELSRQKSTNKMFAFPLHPYFVILVETKLQNINKKIIKSLWSSISVKWHFSPAKSSSGGIVIMWDDIRFKVVDYLVKKFTLSIEITYPNDSNNLNWWLTAVYGPSKRENRGDFWIELHEIKSICLPRWLMESNEEEIQTLLNELEHIDNLEADSNITDLHITRRASIKTDLCQMPFKEAQIWAKICKRLWNLEGGENSAFYHKICSTRQRRSFISSISTAQGVLCSSDVDIEKTLIDHFREIYTEKKRDLWLIDNLPWIPIKTTTHKDLCKX

Homology

[Close]

BLAST of CsaV3_7G023430 vs. NCBI nr
Match: KAE8646134.1 (hypothetical protein Csa_015673, partial [Cucumis sativus])

HSP 1 Score: 566.2 bits (1458), Expect = 1.5e-157
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0


Query: 1   RVELSRQKSTNKMFAFPLHPYFVILVETKLQNINKKIIKSLWSSISVKWHFSPAKSSSGG 60
           RVELSRQKSTNKMFAFPLHPYFVILVETKLQNINKKIIKSLWSSISVKWHFSPAKSSSGG
Sbjct: 1   RVELSRQKSTNKMFAFPLHPYFVILVETKLQNINKKIIKSLWSSISVKWHFSPAKSSSGG 60

Query: 61  IVIMWDDIRFKVVDYLVKKFTLSIEITYPNDSNNLNWWLTAVYGPSKRENRGDFWIELHE 120
           IVIMWDDIRFKVVDYLVKKFTLSIEITYPNDSNNLNWWLTAVYGPSKRENRGDFWIELHE
Sbjct: 61  IVIMWDDIRFKVVDYLVKKFTLSIEITYPNDSNNLNWWLTAVYGPSKRENRGDFWIELHE 120

Query: 121 IKSICLPRWLMESNEEEIQTLLNELEHIDNLEADSNITDLHITRRASIKTDLCQMPFKEA 180
           IKSICLPRWLMESNEEEIQTLLNELEHIDNLEADSNITDLHITRRASIKTDLCQMPFKEA
Sbjct: 121 IKSICLPRWLMESNEEEIQTLLNELEHIDNLEADSNITDLHITRRASIKTDLCQMPFKEA 180

Query: 181 QIWAKICKRLWNLEGGENSAFYHKICSTRQRRSFISSISTAQGVLCSSDVDIEKTLIDHF 240
           QIWAKICKRLWNLEGGENSAFYHKICSTRQRRSFISSISTAQGVLCSSDVDIEKTLIDHF
Sbjct: 181 QIWAKICKRLWNLEGGENSAFYHKICSTRQRRSFISSISTAQGVLCSSDVDIEKTLIDHF 240

Query: 241 REIYTEKKRDLWLIDNLPWIPIKTTTHKDLCK 273
           REIYTEKKRDLWLIDNLPWIPIKTTTHKDLCK
Sbjct: 241 REIYTEKKRDLWLIDNLPWIPIKTTTHKDLCK 272

[Close]

BLAST of CsaV3_7G023430 vs. NCBI nr
Match: TYK02928.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 1.8e-33
Identity = 82/212 (38.68%), Postives = 120/212 (56.60%), Query Frame = 0


Query: 63  IMWDDIRFKVVDYLVK--KFTLSIEITYPNDSNNLNWWLTAVYGPSKRENRGDFWIELHE 122
           + W    F+  + L+K   F  ++++ + N S + +     +    +  N    W ++H 
Sbjct: 24  LKWGPAPFRFTNSLLKDIHFNKNLKVWWNNTSQSGHLGYAFMRRLKQLSNSIKNWQKIHN 83

Query: 123 IKSICLPRWLMESNEEEIQTLLNELEHIDNLEADSNITDLHITRRASIKTDLCQMPFKEA 182
                       + EEE +  + E++ IDNLE ++ + D+    R SIKTDL Q   +EA
Sbjct: 84  -----------GNREEEKKAWIKEIDEIDNLEDENEMIDILRLHRISIKTDLNQFASQEA 143

Query: 183 QIWAKICKRLWNLEGGENSAFYHKICSTRQRRSFISSISTAQGVLCSSDVDIEKTLIDHF 242
           Q W + C+RLWNLEG EN A++HKICS RQRR+FISSI++ +G  C+++  IEK  +DHF
Sbjct: 144 QTWTQRCERLWNLEGDENFAYFHKICSARQRRNFISSITSKRGEACTTNDKIEKAFLDHF 203

Query: 243 REIYTEKKRDLWLIDNLPWIPIKTTTHKDLCK 273
            EIY     DLWLIDNL W  I     +DLCK
Sbjct: 204 EEIYRNNCEDLWLIDNLHWSIISNKEREDLCK 224

[Close]

BLAST of CsaV3_7G023430 vs. NCBI nr
Match: TYK24536.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.8 bits (382), Expect = 8.8e-33
Identity = 100/365 (27.40%), Postives = 138/365 (37.81%), Query Frame = 0


Query: 64  MWDDIRFKVVDYLVKKFTLSIEITYPNDSNNLNWWLTAVYGPSKRENRGDFWIELHEIKS 123
           MWDD+RF V D +   F+LSI I +P+  ++  WWL+A+YGPS   NR  FW EL ++K+
Sbjct: 1   MWDDLRFSVTDCIEGTFSLSININFPDGPSSSAWWLSAIYGPSGGRNRKSFWAELLDLKN 60

Query: 124 ICLPRWLMES-------------------------------------------------- 183
            C P WL+                                                    
Sbjct: 61  KCSPTWLLAGDFNAVRFSSETSTQNPSKHSMRCFNKFISDSNLIDPPLSNAKFTWSNLRV 120

Query: 184 ------------------------------------------------------------ 243
                                                                       
Sbjct: 121 QPVLSRIDRFLYTANWENLFTAHYSKTLSRVTSDHFPIALESSMISWGPSPFKFINVHLK 180

Query: 244 ----------------------------------------------NEEEIQTLLNELEH 272
                                                         N+EE +  + E+++
Sbjct: 181 EPWFKKNVTIWWKNLRQGGHPGFSFMKKLKQLSAIIRDEQKKNKCYNDEEKKAWIKEIDN 240

[Close]

BLAST of CsaV3_7G023430 vs. NCBI nr
Match: KAA0040038.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 5.7e-32
Identity = 100/365 (27.40%), Postives = 140/365 (38.36%), Query Frame = 0


Query: 64  MWDDIRFKVVDYLVKKFTLSIEITYPNDSNNLNWWLTAVYGPSKRENRGDFWIELHEIKS 123
           MWDD+RF V D++   F+LSI I  P+  ++  WWL+A+YGPS   NR  FW EL ++K+
Sbjct: 1   MWDDLRFNVTDFIEGTFSLSININTPDGPSSSAWWLSAIYGPSGGRNRKSFWAELLDLKN 60

Query: 124 ICLPRWLM-------------------------------ESN------------------ 183
            C P WL+                               +SN                  
Sbjct: 61  KCSPTWLLAGDFNVVRFSSETSTQNPSKHSMRCFNKFISDSNLIDPPLSNAKFTWSNLRV 120

Query: 184 ------------------------------------------------------------ 243
                                                                       
Sbjct: 121 QPVLSRIDRFLYTTNWENLFTAHYSKTLSRVTSDHFPIALESSMISWGPSPFKLINVHLK 180

Query: 244 -----------------------------------------------EEEIQTLLNELEH 272
                                                          +E+    + E+++
Sbjct: 181 ESWLKKNVTYWWKNLRQEGHPGFSFMRKLKQLSAIIRNEQRKNKCYSDEDKNAWIKEIDN 240

[Close]

BLAST of CsaV3_7G023430 vs. NCBI nr
Match: TYK06777.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 147.9 bits (372), Expect = 1.3e-31
Identity = 101/365 (27.67%), Postives = 138/365 (37.81%), Query Frame = 0


Query: 64  MWDDIRFKVVDYLVKKFTLSIEITYPNDSNNLNWWLTAVYGPSKRENRGDFWIELHEIKS 123
           MWDD+RF V D++   F+LSI I  P+  +N  WWL+A+YGPS   NR  FW EL ++K+
Sbjct: 1   MWDDLRFNVTDFIEGNFSLSININSPDGPSNSAWWLSAIYGPSGGRNRKSFWAELLDLKN 60

Query: 124 ICLPRWLM-------------------------------ESN------------------ 183
            C P WL+                               +SN                  
Sbjct: 61  KCSPTWLLAGDFNVVRFPSETSAQNPSKHSMRCFNKFIADSNLIDPPLSNAKFTWSNLRV 120

Query: 184 ------------------------------------------------------------ 243
                                                                       
Sbjct: 121 HPVLSRIDRFLYTTNWENLFTAHYSKTLSRVTSDHFPIVLESSLISWGPSPFKLINVHLK 180

Query: 244 -----------------------------------------------EEEIQTLLNELEH 272
                                                          +E+    + E++ 
Sbjct: 181 EPWFKNNITNWWKNLRQEGHPGFSFMRKLKQLSTIIRNEQRKNKCYSDEDKNAWIKEIDS 240

[Close]

BLAST of CsaV3_7G023430 vs. ExPASy TrEMBL
Match: A0A5D3BVB5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00080 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 8.6e-34
Identity = 82/212 (38.68%), Postives = 120/212 (56.60%), Query Frame = 0


Query: 63  IMWDDIRFKVVDYLVK--KFTLSIEITYPNDSNNLNWWLTAVYGPSKRENRGDFWIELHE 122
           + W    F+  + L+K   F  ++++ + N S + +     +    +  N    W ++H 
Sbjct: 24  LKWGPAPFRFTNSLLKDIHFNKNLKVWWNNTSQSGHLGYAFMRRLKQLSNSIKNWQKIHN 83

Query: 123 IKSICLPRWLMESNEEEIQTLLNELEHIDNLEADSNITDLHITRRASIKTDLCQMPFKEA 182
                       + EEE +  + E++ IDNLE ++ + D+    R SIKTDL Q   +EA
Sbjct: 84  -----------GNREEEKKAWIKEIDEIDNLEDENEMIDILRLHRISIKTDLNQFASQEA 143

Query: 183 QIWAKICKRLWNLEGGENSAFYHKICSTRQRRSFISSISTAQGVLCSSDVDIEKTLIDHF 242
           Q W + C+RLWNLEG EN A++HKICS RQRR+FISSI++ +G  C+++  IEK  +DHF
Sbjct: 144 QTWTQRCERLWNLEGDENFAYFHKICSARQRRNFISSITSKRGEACTTNDKIEKAFLDHF 203

Query: 243 REIYTEKKRDLWLIDNLPWIPIKTTTHKDLCK 273
            EIY     DLWLIDNL W  I     +DLCK
Sbjct: 204 EEIYRNNCEDLWLIDNLHWSIISNKEREDLCK 224

[Close]

BLAST of CsaV3_7G023430 vs. ExPASy TrEMBL
Match: A0A5D3DLM2 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00780 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 4.3e-33
Identity = 100/365 (27.40%), Postives = 138/365 (37.81%), Query Frame = 0


Query: 64  MWDDIRFKVVDYLVKKFTLSIEITYPNDSNNLNWWLTAVYGPSKRENRGDFWIELHEIKS 123
           MWDD+RF V D +   F+LSI I +P+  ++  WWL+A+YGPS   NR  FW EL ++K+
Sbjct: 1   MWDDLRFSVTDCIEGTFSLSININFPDGPSSSAWWLSAIYGPSGGRNRKSFWAELLDLKN 60

Query: 124 ICLPRWLMES-------------------------------------------------- 183
            C P WL+                                                    
Sbjct: 61  KCSPTWLLAGDFNAVRFSSETSTQNPSKHSMRCFNKFISDSNLIDPPLSNAKFTWSNLRV 120

Query: 184 ------------------------------------------------------------ 243
                                                                       
Sbjct: 121 QPVLSRIDRFLYTANWENLFTAHYSKTLSRVTSDHFPIALESSMISWGPSPFKFINVHLK 180

Query: 244 ----------------------------------------------NEEEIQTLLNELEH 272
                                                         N+EE +  + E+++
Sbjct: 181 EPWFKKNVTIWWKNLRQGGHPGFSFMKKLKQLSAIIRDEQKKNKCYNDEEKKAWIKEIDN 240

[Close]

BLAST of CsaV3_7G023430 vs. ExPASy TrEMBL
Match: A0A5A7TAQ1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00050 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.8e-32
Identity = 100/365 (27.40%), Postives = 140/365 (38.36%), Query Frame = 0


Query: 64  MWDDIRFKVVDYLVKKFTLSIEITYPNDSNNLNWWLTAVYGPSKRENRGDFWIELHEIKS 123
           MWDD+RF V D++   F+LSI I  P+  ++  WWL+A+YGPS   NR  FW EL ++K+
Sbjct: 1   MWDDLRFNVTDFIEGTFSLSININTPDGPSSSAWWLSAIYGPSGGRNRKSFWAELLDLKN 60

Query: 124 ICLPRWLM-------------------------------ESN------------------ 183
            C P WL+                               +SN                  
Sbjct: 61  KCSPTWLLAGDFNVVRFSSETSTQNPSKHSMRCFNKFISDSNLIDPPLSNAKFTWSNLRV 120

Query: 184 ------------------------------------------------------------ 243
                                                                       
Sbjct: 121 QPVLSRIDRFLYTTNWENLFTAHYSKTLSRVTSDHFPIALESSMISWGPSPFKLINVHLK 180

Query: 244 -----------------------------------------------EEEIQTLLNELEH 272
                                                          +E+    + E+++
Sbjct: 181 ESWLKKNVTYWWKNLRQEGHPGFSFMRKLKQLSAIIRNEQRKNKCYSDEDKNAWIKEIDN 240

[Close]

BLAST of CsaV3_7G023430 vs. ExPASy TrEMBL
Match: A0A5D3C4J1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00790 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 6.2e-32
Identity = 101/365 (27.67%), Postives = 138/365 (37.81%), Query Frame = 0


Query: 64  MWDDIRFKVVDYLVKKFTLSIEITYPNDSNNLNWWLTAVYGPSKRENRGDFWIELHEIKS 123
           MWDD+RF V D++   F+LSI I  P+  +N  WWL+A+YGPS   NR  FW EL ++K+
Sbjct: 1   MWDDLRFNVTDFIEGNFSLSININSPDGPSNSAWWLSAIYGPSGGRNRKSFWAELLDLKN 60

Query: 124 ICLPRWLM-------------------------------ESN------------------ 183
            C P WL+                               +SN                  
Sbjct: 61  KCSPTWLLAGDFNVVRFPSETSAQNPSKHSMRCFNKFIADSNLIDPPLSNAKFTWSNLRV 120

Query: 184 ------------------------------------------------------------ 243
                                                                       
Sbjct: 121 HPVLSRIDRFLYTTNWENLFTAHYSKTLSRVTSDHFPIVLESSLISWGPSPFKLINVHLK 180

Query: 244 -----------------------------------------------EEEIQTLLNELEH 272
                                                          +E+    + E++ 
Sbjct: 181 EPWFKNNITNWWKNLRQEGHPGFSFMRKLKQLSTIIRNEQRKNKCYSDEDKNAWIKEIDS 240

[Close]

BLAST of CsaV3_7G023430 vs. ExPASy TrEMBL
Match: A0A5A7VRD2 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00150 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.5e-30
Identity = 94/328 (28.66%), Postives = 131/328 (39.94%), Query Frame = 0


Query: 64  MWDDIRFKVVDYLVKKFTLSIEITYPNDSNNLNWWLTAVYGPSKRENRGDFWIELHEIKS 123
           MWDD+RF V D++   F+LSI+I  P+      WWL A+YGP+   NR  FW EL ++K+
Sbjct: 1   MWDDLRFNVSDFIEGVFSLSIKINIPDGPPCSAWWLLAIYGPAGGRNRNSFWAELLDLKN 60

Query: 124 ICLPRWLM-------------------------------ESN------------------ 183
           I  P WL+                               ESN                  
Sbjct: 61  IYSPNWLLAGDFNVVRFSSETSVQNPRHYSMRKFNNFISESNLIDPPLSNAKYTWSNLRT 120

Query: 184 ------------------------------------------------------------ 243
                                                                       
Sbjct: 121 QPILSRIDRFLYTMGWENLFSARYSKTLSRVTSDHFPIILETSTVSWGPLPFRFINVHLK 180

Query: 244 ----------EEEIQTLLNELEHIDNLEADSNITDLHITRRASIKTDLCQMPFKEAQIWA 272
                      EE +  + E + ID +EA  N+ +    RR  IK D+     KEAQIW 
Sbjct: 181 SRGLKTTLKDGEEKRAWVKEFDDIDRIEAAGNLFEELSLRRTKIKADILSFDSKEAQIWH 240

The following BLAST results are available for this feature:

BLAST of CsaV3_7G023430 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646134.1	1.5e-157	100.00	hypothetical protein Csa_015673, partial [Cucumis sativus]	[more]
TYK02928.1	1.8e-33	38.68	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK24536.1	8.8e-33	27.40	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0040038.1	5.7e-32	27.40	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK06777.1	1.3e-31	27.67	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_7G023430 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G023430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BVB5	8.6e-34	38.68	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3DLM2	4.3e-33	27.40	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TAQ1	2.8e-32	27.40	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3C4J1	6.2e-32	27.67	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7VRD2	1.5e-30	28.66	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of CsaV3_7G023430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 131..151
None	No IPR available	PANTHER	PTHR22748:SF11	DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE CHLOROPLASTIC	coord: 20..138
IPR004808	AP endonuclease 1	PANTHER	PTHR22748	AP ENDONUCLEASE	coord: 20..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G023430.1	CsaV3_7G023430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
molecular_function	GO:0004518	nuclease activity