CsaV3_7G022180 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G022180
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	NAD(P)H dehydrogenase subunit M
Location	chr7: 11000761 .. 11002873 (-)
RNA-Seq Expression	CsaV3_7G022180
Synteny	CsaV3_7G022180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTAAAATAAGTTAGTTTTCTAAAACTTGTTTTGCTTTTAGAATTAGATTAAAAGGGTAAGTATTTGTTCAAAAATTGTGATAACCTCGAAAATGGAAAACAAACAAGAAAAAATTTAAATTAAATCGTTTTTGTATAATGTATGCATCATGAATATTTGACAAACAAATGAAACAAATATATCTTCACCAAATAGTTTCCATTCTTTTATTATAACGATAGATCATGTCAAATATTGTTAAGTTAAGCCTTTACCAAAATAATTCAATCAACTGAATAGATTTTCTTAAGTTTTTGGCCCTAAATGTGTGTATGGATGTATGTATGTAAGTGCACCAAATGATGAAACATAACCAAAAAAATCTTATCCACAAACAATTGGATCTCATTTCATTTGAAAAAGAAAAAAAGAAGAGAAAAACAAAGACCCTCCATAGGGAAAAAAGGAAAATACTCCAAAACTATAAAACAGAGAAATCAAAACCAACCATTTTCTAAAAGATAGACACCAAAAGAACTCTCCCATGGCGGCAGCAGCAGCAGCTTCATCTTACATAATGTTTTCTATGGTGGGTTGGAAAAATGGCATACAAAACACAAAACACACACTCAGATTTCCCATCTCAGCTCAGATCAATGAAGCTGCAGAGCAACTAAAAGCTGGAGACCAGGAAGAAGATCAAGAACAGGCAAAGCCGAAACCGTCGCCGCTGCGGCCCGTGGAAGTACAACAGAATGTGAAGAGCAAAAACATGGGGAGAGAGTATGGAGGACAATGGCTTAGCAGTGTAACAAGACATGTAAGAATATATGCAGCTTACATTGACCCAATTACTTGTGAGTTTGATCAAACTCAAATGGATAAACTCACTCTCCTTTTGGATCCAAGTAATGAGTTCCTTTGGAATCCTGAAACTTGCAATAAAGTCTATGCTTACTTCCAAGAGCTTGTGGATCATTATGAGGTACTTTTCTTTCTCTCTCTTTCTTTAGTATTTTAGGATCCTTTGTTATATCATGGGTTAGCTCTGCCAAAACTTCAAATCGACCTATTTGTTAATAAAATAGGACTAGCTAATACTATACTAATTGAGCTAAAGAATGTATAAATACATTGATGTACTTTTATTGATTAAAGGTATGTATGGTTCAATTGACAAAACAACAATCGAAGCCCACAACATTTGACAGGGAAATTTTGTAAAATATATTTATATTCTAAACCAGGGTTTATTTGGTTAACTATTTGAGTCAAATTCTAAAAATAAAAATAAAAGAATTTGTGTAGTTTTTAAAACTTGCTTTCATTTTTTAAAACATCAAGTAGAAAATAGAAAACAATAAGAAATTGAAAAAGTAAATATTAACTAAACAAGATGTTAGTGAATTTGAAGGCAATAGATTATTTTATCGTCGTCCAAAAAGTTCGGTTCCAAGTCATCACCCTACTTGTTTTAGGTCTTAATTTTCATCCAAAATTTATAGTGTAATGATAGAAGGGCAATATTACTGACACACGTACGCATATTTTGTAATATAGATTTGTGAAGTTAGTGTGACAATTAAGTTATATTGATGGGGTGTGTGTTTATTTGTGGAAAACCAGGGAGCTCCATTGACAGAATATACACTTAGGCTAATAGGTTCAGACATAGAACACTACATAAGAAAGATGCTTTATGATGGAGAAATCAAGTACAATATGAATGCAAGGGTTCTCAACTTCAGCATGGGAAAGCCAAGAATTATGTTCAATGCCAACGATCTACCGCAGGATGATCTACAATCAAAATAAATATTTTACAAATGTAATTAAATGTTGTCTTCCAAATAGAATCATAAATATTATTCACCTTCATCTCATTTTGATATTGCATCAATGCATAAACTCTACAAATTGTAGTTTTATACACCTTCAAAAGCTACTATATCATTGGGGAGAAACTACAATAAAGAAAAGAAAGACATGCCACTGTCCAGAGAAGGACCAAATTGAAATCTTCCAAATTGTAGTTTTATACCTTCAAAAGCTACTATATATCATAGACAACCTTTTGTTGACATCTTGAAACACTCAAAAGACCAAATTGAAACTATGAGCTAGTTCGGAGA

mRNA sequence

ATGGCGGCAGCAGCAGCAGCTTCATCTTACATAATGTTTTCTATGGTGGGTTGGAAAAATGGCATACAAAACACAAAACACACACTCAGATTTCCCATCTCAGCTCAGATCAATGAAGCTGCAGAGCAACTAAAAGCTGGAGACCAGGAAGAAGATCAAGAACAGGCAAAGCCGAAACCGTCGCCGCTGCGGCCCGTGGAAGTACAACAGAATGTGAAGAGCAAAAACATGGGGAGAGAGTATGGAGGACAATGGCTTAGCAGTGTAACAAGACATGTAAGAATATATGCAGCTTACATTGACCCAATTACTTGTGAGTTTGATCAAACTCAAATGGATAAACTCACTCTCCTTTTGGATCCAAGTAATGAGTTCCTTTGGAATCCTGAAACTTGCAATAAAGTCTATGCTTACTTCCAAGAGCTTGTGGATCATTATGAGGGAGCTCCATTGACAGAATATACACTTAGGCTAATAGGTTCAGACATAGAACACTACATAAGAAAGATGCTTTATGATGGAGAAATCAAGTACAATATGAATGCAAGGGTTCTCAACTTCAGCATGGGAAAGCCAAGAATTATGTTCAATGCCAACGATCTACCGCAGGATGATCTACAATCAAAATAA

Coding sequence (CDS)

ATGGCGGCAGCAGCAGCAGCTTCATCTTACATAATGTTTTCTATGGTGGGTTGGAAAAATGGCATACAAAACACAAAACACACACTCAGATTTCCCATCTCAGCTCAGATCAATGAAGCTGCAGAGCAACTAAAAGCTGGAGACCAGGAAGAAGATCAAGAACAGGCAAAGCCGAAACCGTCGCCGCTGCGGCCCGTGGAAGTACAACAGAATGTGAAGAGCAAAAACATGGGGAGAGAGTATGGAGGACAATGGCTTAGCAGTGTAACAAGACATGTAAGAATATATGCAGCTTACATTGACCCAATTACTTGTGAGTTTGATCAAACTCAAATGGATAAACTCACTCTCCTTTTGGATCCAAGTAATGAGTTCCTTTGGAATCCTGAAACTTGCAATAAAGTCTATGCTTACTTCCAAGAGCTTGTGGATCATTATGAGGGAGCTCCATTGACAGAATATACACTTAGGCTAATAGGTTCAGACATAGAACACTACATAAGAAAGATGCTTTATGATGGAGAAATCAAGTACAATATGAATGCAAGGGTTCTCAACTTCAGCATGGGAAAGCCAAGAATTATGTTCAATGCCAACGATCTACCGCAGGATGATCTACAATCAAAATAA

Protein sequence

MAAAAAASSYIMFSMVGWKNGIQNTKHTLRFPISAQINEAAEQLKAGDQEEDQEQAKPKPSPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLLLDPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNARVLNFSMGKPRIMFNANDLPQDDLQSK*

Homology

[Close]

BLAST of CsaV3_7G022180 vs. NCBI nr
Match: XP_004139803.1 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucumis sativus] >KGN44204.1 hypothetical protein Csa_016125 [Cucumis sativus])

HSP 1 Score: 425.6 bits (1093), Expect = 2.4e-115
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MAAAAAASSYIMFSMVGWKNGIQNTKHTLRFPISAQINEAAEQLKAGDQEEDQEQAKPKP 60
           MAAAAAASSYIMFSMVGWKNGIQNTKHTLRFPISAQINEAAEQLKAGDQEEDQEQAKPKP
Sbjct: 1   MAAAAAASSYIMFSMVGWKNGIQNTKHTLRFPISAQINEAAEQLKAGDQEEDQEQAKPKP 60

Query: 61  SPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLLLD 120
           SPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLLLD
Sbjct: 61  SPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLLLD 120

Query: 121 PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180
           PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM
Sbjct: 121 PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180

Query: 181 NARVLNFSMGKPRIMFNANDLPQDDLQSK 210
           NARVLNFSMGKPRIMFNANDLPQDDLQSK
Sbjct: 181 NARVLNFSMGKPRIMFNANDLPQDDLQSK 209

[Close]

BLAST of CsaV3_7G022180 vs. NCBI nr
Match: XP_008447195.1 (PREDICTED: NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucumis melo] >KAA0041980.1 NAD(P)H-quinone oxidoreductase subunit M [Cucumis melo var. makuwa] >TYK17916.1 NAD(P)H-quinone oxidoreductase subunit M [Cucumis melo var. makuwa])

HSP 1 Score: 414.1 bits (1063), Expect = 7.3e-112
Identity = 201/209 (96.17%), Postives = 205/209 (98.09%), Query Frame = 0


Query: 1   MAAAAAASSYIMFSMVGWKNGIQNTKHTLRFPISAQINEAAEQLKAGDQEEDQEQAKPKP 60
           MA AAAASSYIMFSMVGWKNG QNTKHTLRFPISAQ+NEAAEQLK GDQEEDQEQA PKP
Sbjct: 1   MATAAAASSYIMFSMVGWKNGKQNTKHTLRFPISAQLNEAAEQLKVGDQEEDQEQATPKP 60

Query: 61  SPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLLLD 120
           SPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDP+TCEFDQTQMDKLTL+LD
Sbjct: 61  SPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILD 120

Query: 121 PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180
           PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM
Sbjct: 121 PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180

Query: 181 NARVLNFSMGKPRIMFNANDLPQDDLQSK 210
           NARVLNFSMGKPRIMFNANDLPQDDLQS+
Sbjct: 181 NARVLNFSMGKPRIMFNANDLPQDDLQSQ 209

[Close]

BLAST of CsaV3_7G022180 vs. NCBI nr
Match: XP_038899189.1 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Benincasa hispida])

HSP 1 Score: 370.5 bits (950), Expect = 9.3e-99
Identity = 182/205 (88.78%), Postives = 192/205 (93.66%), Query Frame = 0


Query: 5   AAASSYIMFSMVGWKNGIQNTKHTLRFPISAQINEAAEQLKAGDQEEDQEQAKPKPSPLR 64
           A ASSY++F MVGWKN  QNTK   +FPISAQINEAAEQL  GDQ++ +EQ KPKPSPLR
Sbjct: 2   ATASSYMVFPMVGWKNSKQNTKPKPKFPISAQINEAAEQLNLGDQQK-EEQGKPKPSPLR 61

Query: 65  PVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLLLDPSNE 124
           PVE QQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDP+TCEFDQTQMDKLTL+LDPSNE
Sbjct: 62  PVEAQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDPSNE 121

Query: 125 FLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNARV 184
           FLWNP+TCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNARV
Sbjct: 122 FLWNPQTCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNARV 181

Query: 185 LNFSMGKPRIMFNANDLPQDDLQSK 210
           LNFSMGKPRIMFNANDLPQ DLQS+
Sbjct: 182 LNFSMGKPRIMFNANDLPQ-DLQSQ 204

[Close]

BLAST of CsaV3_7G022180 vs. NCBI nr
Match: XP_022940621.1 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucurbita moschata] >XP_023523685.1 NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucurbita pepo subsp. pepo] >KAG6607714.1 NAD(P)H-quinone oxidoreductase subunit M, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 368.2 bits (944), Expect = 4.6e-98
Identity = 181/205 (88.29%), Postives = 192/205 (93.66%), Query Frame = 0


Query: 4   AAAASSYIMFSMVGWKNGIQNTKHTLRFPISAQINEAAEQLKAGDQEEDQEQAKPKPSPL 63
           A AASSY++FSMVGWKNG QNT+ + RFPISAQINEAAEQLK G +EE++ + KP PSPL
Sbjct: 2   ATAASSYMVFSMVGWKNGKQNTRPSARFPISAQINEAAEQLKVG-EEEEEAKPKPPPSPL 61

Query: 64  RPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLLLDPSN 123
           RPVE Q NVKSKNM REYGGQWLSSVTRHVRIYAAYIDP+TCEFDQTQMDKLTL+LDPSN
Sbjct: 62  RPVETQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDPSN 121

Query: 124 EFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAR 183
           EFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAR
Sbjct: 122 EFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAR 181

Query: 184 VLNFSMGKPRIMFNANDLPQDDLQS 209
           VLNFSMGKPRIMFN+NDLPQ DLQS
Sbjct: 182 VLNFSMGKPRIMFNSNDLPQ-DLQS 204

[Close]

BLAST of CsaV3_7G022180 vs. NCBI nr
Match: XP_022981611.1 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucurbita maxima])

HSP 1 Score: 365.9 bits (938), Expect = 2.3e-97
Identity = 182/207 (87.92%), Postives = 192/207 (92.75%), Query Frame = 0


Query: 4   AAAASSYIMFSMVGWKNGIQNTKHTLRFPISAQINEAAEQLKAGDQEEDQEQAKPKP--S 63
           + AASSY++FSMVGWKNG QNT+ + RFPISAQINEAAEQLK G++EE    AKPKP  S
Sbjct: 2   STAASSYMVFSMVGWKNGKQNTRPSARFPISAQINEAAEQLKVGEEEE----AKPKPPLS 61

Query: 64  PLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLLLDP 123
           PLRPVE Q NVKSKNM REYGGQWLSSVTRHVRIYAAYIDP+TCEFDQTQMDKLTL+LDP
Sbjct: 62  PLRPVETQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDP 121

Query: 124 SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN 183
           SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN
Sbjct: 122 SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN 181

Query: 184 ARVLNFSMGKPRIMFNANDLPQDDLQS 209
           ARVLNFSMGKPRIMFN+NDLPQ DLQS
Sbjct: 182 ARVLNFSMGKPRIMFNSNDLPQ-DLQS 203

[Close]

BLAST of CsaV3_7G022180 vs. ExPASy Swiss-Prot
Match: A7NVJ4 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Vitis vinifera OX=29760 GN=ndhM PE=2 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.4e-76
Identity = 145/207 (70.05%), Postives = 170/207 (82.13%), Query Frame = 0


Query: 1   MAAAAAASSYIMFSMVGWKNGIQNTKHTLRFPISAQIN---EAAEQLKAGDQEEDQEQAK 60
           MAA ++ ++   FSM+GW  G +  +    F ISAQ     E ++Q+ A ++E+++ + +
Sbjct: 1   MAATSSYTACTKFSMLGWIGGKRELRKRRAFFISAQQQAEVEESQQVNAQEEEQEKMKQQ 60

Query: 61  PKPSPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTL 120
            K    RPVE Q NVKSKNM REYGGQWLSSVTRHVRIYAAYIDP+TCEFDQTQMDKLTL
Sbjct: 61  GKQKLPRPVEPQVNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTL 120

Query: 121 LLDPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIK 180
           +LDP+NEF+W  ETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRK+LYDGEIK
Sbjct: 121 ILDPTNEFVWTSETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKLLYDGEIK 180

Query: 181 YNMNARVLNFSMGKPRIMFNANDLPQD 205
           YNMNARVLNFSMGKPRI+FN + LPQ+
Sbjct: 181 YNMNARVLNFSMGKPRILFN-DGLPQN 206

[Close]

BLAST of CsaV3_7G022180 vs. ExPASy Swiss-Prot
Match: A9PJQ8 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Populus jackii OX=640484 GN=ndhM PE=2 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 7.0e-73
Identity = 140/204 (68.63%), Postives = 161/204 (78.92%), Query Frame = 0


Query: 1   MAAAAAASSYIMFSMVGWKNGIQNTKHTLRFPISAQINEAAEQLKAGDQEEDQEQAKPKP 60
           MAA+++  +   FSM+GW  G +  K  +R  IS    E AE  ++ +    +E+   +P
Sbjct: 1   MAASSSYMACAKFSMLGWLGGRRELK--MRRVISVSPQEQAEVQESQEVNAQEEEKVKQP 60

Query: 61  SPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLLLD 120
              RPVE Q NVKSKNMGREYGGQWLSSVTRHVRIYAAYIDP TCEFDQTQ DKLTL+LD
Sbjct: 61  VQPRPVEPQVNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPETCEFDQTQTDKLTLILD 120

Query: 121 PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180
           P++EF+W  ETC KVY+YFQELVDHYEGAPLTEYTLRLIGSDIEHYIRK+LYDGEIKYNM
Sbjct: 121 PTDEFVWTDETCYKVYSYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKLLYDGEIKYNM 180

Query: 181 NARVLNFSMGKPRIMFNANDLPQD 205
           NARVLNFSMGKPRI+FN +   QD
Sbjct: 181 NARVLNFSMGKPRILFNNDGQLQD 202

[Close]

BLAST of CsaV3_7G022180 vs. ExPASy Swiss-Prot
Match: Q2V2S7 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhM PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 4.4e-67
Identity = 121/164 (73.78%), Postives = 144/164 (87.80%), Query Frame = 0


Query: 49  QEEDQEQAKPKPSPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFD 108
           +E+  E+ K +P+PLRPVE Q NVKSK MG ++GGQWLSSVTRHVRIYAAYIDP TCEFD
Sbjct: 54  EEQSTEKMKKQPTPLRPVEKQLNVKSKGMG-DFGGQWLSSVTRHVRIYAAYIDPETCEFD 113

Query: 109 QTQMDKLTLLLDPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIR 168
           Q+QMDKLTL+LDP+ EF+W+ E+CNKVY+YFQELVDHYEGAPLTEYTLRLIGSD+EHYIR
Sbjct: 114 QSQMDKLTLILDPTEEFVWDDESCNKVYSYFQELVDHYEGAPLTEYTLRLIGSDVEHYIR 173

Query: 169 KMLYDGEIKYNMNARVLNFSMGKPRIMFNANDL-------PQDD 206
           KML+DGEI+YNM+ARVLNFSMGKPR+ FN +++       PQ+D
Sbjct: 174 KMLFDGEIQYNMDARVLNFSMGKPRVQFNTSNIEGGGDGQPQED 216

[Close]

BLAST of CsaV3_7G022180 vs. ExPASy Swiss-Prot
Match: A2XVZ1 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=ndhM PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 4.4e-59
Identity = 112/165 (67.88%), Postives = 132/165 (80.00%), Query Frame = 0


Query: 40  AAEQLKAGDQEEDQ--EQAKPKPSPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYA 99
           A E L    QEE+Q  E+   +  P +P+ VQ   +SKNM REYGGQWLS  TRH+RIYA
Sbjct: 53  AVENLPPPPQEEEQRRERKTRRQGPAQPLPVQPLAESKNMSREYGGQWLSCTTRHIRIYA 112

Query: 100 AYIDPITCEFDQTQMDKLTLLLDPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLR 159
           AYI+P T  FDQTQMDKLTLLLDP++EF+W  ETC KVY  FQ+LVDHYEGA L+EYTLR
Sbjct: 113 AYINPETNAFDQTQMDKLTLLLDPTDEFVWTDETCQKVYDEFQDLVDHYEGAELSEYTLR 172

Query: 160 LIGSDIEHYIRKMLYDGEIKYNMNARVLNFSMGKPRIMFNANDLP 203
           LIGSD+EH+IRK+LYDGEIKYNM +RVLNFSMGKPRI FN++ +P
Sbjct: 173 LIGSDLEHFIRKLLYDGEIKYNMMSRVLNFSMGKPRIKFNSSQIP 217

[Close]

BLAST of CsaV3_7G022180 vs. ExPASy Swiss-Prot
Match: Q7FB12 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ndhM PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 4.4e-59
Identity = 112/165 (67.88%), Postives = 132/165 (80.00%), Query Frame = 0


Query: 40  AAEQLKAGDQEEDQ--EQAKPKPSPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYA 99
           A E L    QEE+Q  E+   +  P +P+ VQ   +SKNM REYGGQWLS  TRH+RIYA
Sbjct: 53  AVENLPPPPQEEEQRRERKTRRQGPAQPLPVQPLAESKNMSREYGGQWLSCTTRHIRIYA 112

Query: 100 AYIDPITCEFDQTQMDKLTLLLDPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLR 159
           AYI+P T  FDQTQMDKLTLLLDP++EF+W  ETC KVY  FQ+LVDHYEGA L+EYTLR
Sbjct: 113 AYINPETNAFDQTQMDKLTLLLDPTDEFVWTDETCQKVYDEFQDLVDHYEGAELSEYTLR 172

Query: 160 LIGSDIEHYIRKMLYDGEIKYNMNARVLNFSMGKPRIMFNANDLP 203
           LIGSD+EH+IRK+LYDGEIKYNM +RVLNFSMGKPRI FN++ +P
Sbjct: 173 LIGSDLEHFIRKLLYDGEIKYNMMSRVLNFSMGKPRIKFNSSQIP 217

[Close]

BLAST of CsaV3_7G022180 vs. ExPASy TrEMBL
Match: A0A0A0K5H1 (NAD(P)H dehydrogenase subunit M OS=Cucumis sativus OX=3659 GN=Csa_7G221360 PE=3 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 1.2e-115
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MAAAAAASSYIMFSMVGWKNGIQNTKHTLRFPISAQINEAAEQLKAGDQEEDQEQAKPKP 60
           MAAAAAASSYIMFSMVGWKNGIQNTKHTLRFPISAQINEAAEQLKAGDQEEDQEQAKPKP
Sbjct: 1   MAAAAAASSYIMFSMVGWKNGIQNTKHTLRFPISAQINEAAEQLKAGDQEEDQEQAKPKP 60

Query: 61  SPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLLLD 120
           SPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLLLD
Sbjct: 61  SPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLLLD 120

Query: 121 PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180
           PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM
Sbjct: 121 PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180

Query: 181 NARVLNFSMGKPRIMFNANDLPQDDLQSK 210
           NARVLNFSMGKPRIMFNANDLPQDDLQSK
Sbjct: 181 NARVLNFSMGKPRIMFNANDLPQDDLQSK 209

[Close]

BLAST of CsaV3_7G022180 vs. ExPASy TrEMBL
Match: A0A5D3D3P2 (NAD(P)H dehydrogenase subunit M OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002070 PE=3 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 3.5e-112
Identity = 201/209 (96.17%), Postives = 205/209 (98.09%), Query Frame = 0


Query: 1   MAAAAAASSYIMFSMVGWKNGIQNTKHTLRFPISAQINEAAEQLKAGDQEEDQEQAKPKP 60
           MA AAAASSYIMFSMVGWKNG QNTKHTLRFPISAQ+NEAAEQLK GDQEEDQEQA PKP
Sbjct: 1   MATAAAASSYIMFSMVGWKNGKQNTKHTLRFPISAQLNEAAEQLKVGDQEEDQEQATPKP 60

Query: 61  SPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLLLD 120
           SPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDP+TCEFDQTQMDKLTL+LD
Sbjct: 61  SPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILD 120

Query: 121 PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180
           PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM
Sbjct: 121 PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180

Query: 181 NARVLNFSMGKPRIMFNANDLPQDDLQSK 210
           NARVLNFSMGKPRIMFNANDLPQDDLQS+
Sbjct: 181 NARVLNFSMGKPRIMFNANDLPQDDLQSQ 209

[Close]

BLAST of CsaV3_7G022180 vs. ExPASy TrEMBL
Match: A0A1S3BGV5 (NAD(P)H dehydrogenase subunit M OS=Cucumis melo OX=3656 GN=LOC103489705 PE=3 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 3.5e-112
Identity = 201/209 (96.17%), Postives = 205/209 (98.09%), Query Frame = 0


Query: 1   MAAAAAASSYIMFSMVGWKNGIQNTKHTLRFPISAQINEAAEQLKAGDQEEDQEQAKPKP 60
           MA AAAASSYIMFSMVGWKNG QNTKHTLRFPISAQ+NEAAEQLK GDQEEDQEQA PKP
Sbjct: 1   MATAAAASSYIMFSMVGWKNGKQNTKHTLRFPISAQLNEAAEQLKVGDQEEDQEQATPKP 60

Query: 61  SPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLLLD 120
           SPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDP+TCEFDQTQMDKLTL+LD
Sbjct: 61  SPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILD 120

Query: 121 PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180
           PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM
Sbjct: 121 PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180

Query: 181 NARVLNFSMGKPRIMFNANDLPQDDLQSK 210
           NARVLNFSMGKPRIMFNANDLPQDDLQS+
Sbjct: 181 NARVLNFSMGKPRIMFNANDLPQDDLQSQ 209

[Close]

BLAST of CsaV3_7G022180 vs. ExPASy TrEMBL
Match: A0A6J1FIZ9 (NAD(P)H dehydrogenase subunit M OS=Cucurbita moschata OX=3662 GN=LOC111446160 PE=3 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.2e-98
Identity = 181/205 (88.29%), Postives = 192/205 (93.66%), Query Frame = 0


Query: 4   AAAASSYIMFSMVGWKNGIQNTKHTLRFPISAQINEAAEQLKAGDQEEDQEQAKPKPSPL 63
           A AASSY++FSMVGWKNG QNT+ + RFPISAQINEAAEQLK G +EE++ + KP PSPL
Sbjct: 2   ATAASSYMVFSMVGWKNGKQNTRPSARFPISAQINEAAEQLKVG-EEEEEAKPKPPPSPL 61

Query: 64  RPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLLLDPSN 123
           RPVE Q NVKSKNM REYGGQWLSSVTRHVRIYAAYIDP+TCEFDQTQMDKLTL+LDPSN
Sbjct: 62  RPVETQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDPSN 121

Query: 124 EFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAR 183
           EFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAR
Sbjct: 122 EFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAR 181

Query: 184 VLNFSMGKPRIMFNANDLPQDDLQS 209
           VLNFSMGKPRIMFN+NDLPQ DLQS
Sbjct: 182 VLNFSMGKPRIMFNSNDLPQ-DLQS 204

[Close]

BLAST of CsaV3_7G022180 vs. ExPASy TrEMBL
Match: A0A6J1IX15 (NAD(P)H dehydrogenase subunit M OS=Cucurbita maxima OX=3661 GN=LOC111480680 PE=3 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 1.1e-97
Identity = 182/207 (87.92%), Postives = 192/207 (92.75%), Query Frame = 0


Query: 4   AAAASSYIMFSMVGWKNGIQNTKHTLRFPISAQINEAAEQLKAGDQEEDQEQAKPKP--S 63
           + AASSY++FSMVGWKNG QNT+ + RFPISAQINEAAEQLK G++EE    AKPKP  S
Sbjct: 2   STAASSYMVFSMVGWKNGKQNTRPSARFPISAQINEAAEQLKVGEEEE----AKPKPPLS 61

Query: 64  PLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLLLDP 123
           PLRPVE Q NVKSKNM REYGGQWLSSVTRHVRIYAAYIDP+TCEFDQTQMDKLTL+LDP
Sbjct: 62  PLRPVETQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDP 121

Query: 124 SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN 183
           SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN
Sbjct: 122 SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN 181

Query: 184 ARVLNFSMGKPRIMFNANDLPQDDLQS 209
           ARVLNFSMGKPRIMFN+NDLPQ DLQS
Sbjct: 182 ARVLNFSMGKPRIMFNSNDLPQ-DLQS 203

[Close]

BLAST of CsaV3_7G022180 vs. TAIR 10
Match: AT4G37925.1 (subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex )

HSP 1 Score: 255.8 bits (652), Expect = 3.1e-68
Identity = 121/164 (73.78%), Postives = 144/164 (87.80%), Query Frame = 0


Query: 49  QEEDQEQAKPKPSPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFD 108
           +E+  E+ K +P+PLRPVE Q NVKSK MG ++GGQWLSSVTRHVRIYAAYIDP TCEFD
Sbjct: 54  EEQSTEKMKKQPTPLRPVEKQLNVKSKGMG-DFGGQWLSSVTRHVRIYAAYIDPETCEFD 113

Query: 109 QTQMDKLTLLLDPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIR 168
           Q+QMDKLTL+LDP+ EF+W+ E+CNKVY+YFQELVDHYEGAPLTEYTLRLIGSD+EHYIR
Sbjct: 114 QSQMDKLTLILDPTEEFVWDDESCNKVYSYFQELVDHYEGAPLTEYTLRLIGSDVEHYIR 173

Query: 169 KMLYDGEIKYNMNARVLNFSMGKPRIMFNANDL-------PQDD 206
           KML+DGEI+YNM+ARVLNFSMGKPR+ FN +++       PQ+D
Sbjct: 174 KMLFDGEIQYNMDARVLNFSMGKPRVQFNTSNIEGGGDGQPQED 216

The following BLAST results are available for this feature:

BLAST of CsaV3_7G022180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139803.1	2.4e-115	100.00	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucumis sativus] >KGN44...	[more]
XP_008447195.1	7.3e-112	96.17	PREDICTED: NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucumis melo...	[more]
XP_038899189.1	9.3e-99	88.78	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Benincasa hispida]	[more]
XP_022940621.1	4.6e-98	88.29	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucurbita moschata] >XP...	[more]
XP_022981611.1	2.3e-97	87.92	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucurbita maxima]	[more]

BLAST of CsaV3_7G022180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A7NVJ4	1.4e-76	70.05	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Vitis vinifera OX=297...	[more]
A9PJQ8	7.0e-73	68.63	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Populus jackii OX=640...	[more]
Q2V2S7	4.4e-67	73.78	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Arabidopsis thaliana ...	[more]
A2XVZ1	4.4e-59	67.88	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. i...	[more]
Q7FB12	4.4e-59	67.88	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. j...	[more]

BLAST of CsaV3_7G022180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5H1	1.2e-115	100.00	NAD(P)H dehydrogenase subunit M OS=Cucumis sativus OX=3659 GN=Csa_7G221360 PE=3 ...	[more]
A0A5D3D3P2	3.5e-112	96.17	NAD(P)H dehydrogenase subunit M OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BGV5	3.5e-112	96.17	NAD(P)H dehydrogenase subunit M OS=Cucumis melo OX=3656 GN=LOC103489705 PE=3 SV=...	[more]
A0A6J1FIZ9	2.2e-98	88.29	NAD(P)H dehydrogenase subunit M OS=Cucurbita moschata OX=3662 GN=LOC111446160 PE...	[more]
A0A6J1IX15	1.1e-97	87.92	NAD(P)H dehydrogenase subunit M OS=Cucurbita maxima OX=3661 GN=LOC111480680 PE=3...	[more]

BLAST of CsaV3_7G022180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37925.1	3.1e-68	73.78	subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 37..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..58
IPR018922	NAD(P)H-quinone oxidoreductase subunit M	PFAM	PF10664	NdhM	coord: 86..194 e-value: 1.9E-45 score: 153.6
IPR018922	NAD(P)H-quinone oxidoreductase subunit M	PANTHER	PTHR36900	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT M, CHLOROPLASTIC	coord: 1..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G022180.1	CsaV3_7G022180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor