CsaV3_7G018370 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G018370
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	PMD domain-containing protein
Location	chr7: 8256083 .. 8256417 (+)
RNA-Seq Expression	CsaV3_7G018370
Synteny	CsaV3_7G018370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGCGAAGGTATCAGGTGATAACTCTTGCGAAAGGGGCTCAAGTGCTATGAGAATTCCTAATGTCCCACCACTGGTTTGCATATTTTCCTTCTTTAATAATTTTCTTTTATTATTAATCTTCTTCATGAGTGATTTATCCATTGCTTATTTTTGCAGTCACCTTTAGACCACCATCTTGAAGGGCTTGTAGATGTAGACAGTGATGAATCACTAACTGGTCCTCATATGGCTGACACGACTATCGAGAAAGTTGGTATTTTGAAGACACCAGCTGCAAAACCAGTCGAACTATCCTTACATCTCTCTGCTCTTCTCGAGAAGATTCGTTGA

mRNA sequence

ATGAAAGCGAAGGTATCAGGTGATAACTCTTGCGAAAGGGGCTCAAGTGCTATGAGAATTCCTAATGTCCCACCACTGTCACCTTTAGACCACCATCTTGAAGGGCTTGTAGATGTAGACAGTGATGAATCACTAACTGGTCCTCATATGGCTGACACGACTATCGAGAAAGTTGGTATTTTGAAGACACCAGCTGCAAAACCAGTCGAACTATCCTTACATCTCTCTGCTCTTCTCGAGAAGATTCGTTGA

Coding sequence (CDS)

ATGAAAGCGAAGGTATCAGGTGATAACTCTTGCGAAAGGGGCTCAAGTGCTATGAGAATTCCTAATGTCCCACCACTGTCACCTTTAGACCACCATCTTGAAGGGCTTGTAGATGTAGACAGTGATGAATCACTAACTGGTCCTCATATGGCTGACACGACTATCGAGAAAGTTGGTATTTTGAAGACACCAGCTGCAAAACCAGTCGAACTATCCTTACATCTCTCTGCTCTTCTCGAGAAGATTCGTTGA

Protein sequence

MKAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGILKTPAAKPVELSLHLSALLEKIR*

Homology

[Close]

BLAST of CsaV3_7G018370 vs. NCBI nr
Match: KGN44065.1 (hypothetical protein Csa_015484 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 6.2e-38
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MKAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGI 60
          MKAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGI
Sbjct: 1  MKAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGI 60

Query: 61 LKTPAAKPVELSLHLSALLEKIR 84
          LKTPAAKPVELSLHLSALLEKIR
Sbjct: 61 LKTPAAKPVELSLHLSALLEKIR 83

[Close]

BLAST of CsaV3_7G018370 vs. NCBI nr
Match: KAA0063075.1 (hypothetical protein E6C27_scaffold468G001930 [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 9.0e-21
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 2   KAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGIL 61
           KAKVSGD+   RG SA+ +P+VPPLSPL+ HLEGL++ DSDESLTGPH  D+  E+VG  
Sbjct: 31  KAKVSGDHPNGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTS 90

Query: 62  KTPAAKPVELSLHLSALLEKIR 84
           KTP  KP E SLH SALLE+IR
Sbjct: 91  KTPVNKPAEQSLHPSALLEEIR 112

[Close]

BLAST of CsaV3_7G018370 vs. NCBI nr
Match: KAA0054388.1 (hypothetical protein E6C27_scaffold24G001310 [Cucumis melo var. makuwa] >TYJ96814.1 hypothetical protein E5676_scaffold2750G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 1.5e-20
Identity = 55/82 (67.07%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 2   KAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGIL 61
           KAKVSGD+   RGSSA  +PNVPPLSPL+ HLEGLV++DSD+SLTGP+  D+TIE VG L
Sbjct: 76  KAKVSGDDPDGRGSSAFGVPNVPPLSPLNAHLEGLVELDSDKSLTGPYAVDSTIEGVGTL 135

Query: 62  KTPAAKPVELSLHLSALLEKIR 84
           KT  +KP+E SL  SALL++IR
Sbjct: 136 KTTVSKPIEQSLRPSALLKEIR 157

[Close]

BLAST of CsaV3_7G018370 vs. NCBI nr
Match: TYK16277.1 (hypothetical protein E5676_scaffold21G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 1.5e-20
Identity = 54/82 (65.85%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 2   KAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGIL 61
           KAKVSGD+   RG SA+ +P+VPPLSPL+ HLEGL++ DSDESLTGPH  D+  E+VG  
Sbjct: 31  KAKVSGDHPNGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTS 90

Query: 62  KTPAAKPVELSLHLSALLEKIR 84
           KTP  KP E SLH SALLE IR
Sbjct: 91  KTPVNKPAEQSLHPSALLEDIR 112

[Close]

BLAST of CsaV3_7G018370 vs. NCBI nr
Match: KAA0037262.1 (hypothetical protein E6C27_scaffold379G001910 [Cucumis melo var. makuwa] >TYK07521.1 hypothetical protein E5676_scaffold702G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 1.5e-20
Identity = 54/82 (65.85%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 2   KAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGIL 61
           KAK+S D+   RGSSA+R+PNVPPL PL+ HLEGLV++D+DESLTGPH  D+TIE VG  
Sbjct: 31  KAKISDDDPDGRGSSALRVPNVPPLLPLNTHLEGLVELDNDESLTGPHAVDSTIEGVGTS 90

Query: 62  KTPAAKPVELSLHLSALLEKIR 84
           KTP +KP + SL  SALLE+IR
Sbjct: 91  KTPISKPAKQSLRPSALLEEIR 112

[Close]

BLAST of CsaV3_7G018370 vs. ExPASy TrEMBL
Match: A0A0A0K338 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G160510 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.0e-38
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MKAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGI 60
          MKAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGI
Sbjct: 1  MKAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGI 60

Query: 61 LKTPAAKPVELSLHLSALLEKIR 84
          LKTPAAKPVELSLHLSALLEKIR
Sbjct: 61 LKTPAAKPVELSLHLSALLEKIR 83

[Close]

BLAST of CsaV3_7G018370 vs. ExPASy TrEMBL
Match: A0A5A7VAY8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001930 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.4e-21
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 2   KAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGIL 61
           KAKVSGD+   RG SA+ +P+VPPLSPL+ HLEGL++ DSDESLTGPH  D+  E+VG  
Sbjct: 31  KAKVSGDHPNGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTS 90

Query: 62  KTPAAKPVELSLHLSALLEKIR 84
           KTP  KP E SLH SALLE+IR
Sbjct: 91  KTPVNKPAEQSLHPSALLEEIR 112

[Close]

BLAST of CsaV3_7G018370 vs. ExPASy TrEMBL
Match: A0A5D3C6L1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold702G00070 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 7.5e-21
Identity = 54/82 (65.85%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 2   KAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGIL 61
           KAK+S D+   RGSSA+R+PNVPPL PL+ HLEGLV++D+DESLTGPH  D+TIE VG  
Sbjct: 31  KAKISDDDPDGRGSSALRVPNVPPLLPLNTHLEGLVELDNDESLTGPHAVDSTIEGVGTS 90

Query: 62  KTPAAKPVELSLHLSALLEKIR 84
           KTP +KP + SL  SALLE+IR
Sbjct: 91  KTPISKPAKQSLRPSALLEEIR 112

[Close]

BLAST of CsaV3_7G018370 vs. ExPASy TrEMBL
Match: A0A5D3BCT1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2750G00050 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 7.5e-21
Identity = 55/82 (67.07%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 2   KAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGIL 61
           KAKVSGD+   RGSSA  +PNVPPLSPL+ HLEGLV++DSD+SLTGP+  D+TIE VG L
Sbjct: 76  KAKVSGDDPDGRGSSAFGVPNVPPLSPLNAHLEGLVELDSDKSLTGPYAVDSTIEGVGTL 135

Query: 62  KTPAAKPVELSLHLSALLEKIR 84
           KT  +KP+E SL  SALL++IR
Sbjct: 136 KTTVSKPIEQSLRPSALLKEIR 157

[Close]

BLAST of CsaV3_7G018370 vs. ExPASy TrEMBL
Match: A0A5D3CWK5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00460 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 7.5e-21
Identity = 54/82 (65.85%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 2   KAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGIL 61
           KAKVSGD+   RG SA+ +P+VPPLSPL+ HLEGL++ DSDESLTGPH  D+  E+VG  
Sbjct: 31  KAKVSGDHPNGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTS 90

Query: 62  KTPAAKPVELSLHLSALLEKIR 84
           KTP  KP E SLH SALLE IR
Sbjct: 91  KTPVNKPAEQSLHPSALLEDIR 112

The following BLAST results are available for this feature:

BLAST of CsaV3_7G018370 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44065.1	6.2e-38	100.00	hypothetical protein Csa_015484 [Cucumis sativus]	[more]
KAA0063075.1	9.0e-21	65.85	hypothetical protein E6C27_scaffold468G001930 [Cucumis melo var. makuwa]	[more]
KAA0054388.1	1.5e-20	67.07	hypothetical protein E6C27_scaffold24G001310 [Cucumis melo var. makuwa] >TYJ9681...	[more]
TYK16277.1	1.5e-20	65.85	hypothetical protein E5676_scaffold21G00460 [Cucumis melo var. makuwa]	[more]
KAA0037262.1	1.5e-20	65.85	hypothetical protein E6C27_scaffold379G001910 [Cucumis melo var. makuwa] >TYK075...	[more]

BLAST of CsaV3_7G018370 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G018370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K338	3.0e-38	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G160510 PE=4 SV=1	[more]
A0A5A7VAY8	4.4e-21	65.85	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C6L1	7.5e-21	65.85	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BCT1	7.5e-21	67.07	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CWK5	7.5e-21	65.85	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsaV3_7G018370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 75..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G018370.1	CsaV3_7G018370.1	mRNA