CsaV3_7G011500 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G011500
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7: 6314496 .. 6314939 (+)
RNA-Seq Expression	CsaV3_7G011500
Synteny	CsaV3_7G011500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTGTGAGACAAAAGTGGAGGAGGAAGCGACCAAGGAGTTTGAGAAAGAAAGCAATAAAAATACTATGTTGGAGGAGAAAATGCCTAATGGCAAGAAGGAAGGAGGACAAGTATATGCAAAGATGCTCTTGCGGGCACAAGTAGAGAAAAGGCGAAAAGGAAAATTGGGATCTCGTCACCATCCATATGGCGGTCAATAAAAATAGTGATGAGGGTACAAACAAGAAGAGGAGGAAGTCTTAGGACCAAAGAGAAGACAACCATTTAAGGCTGAGGAATTCAATGACATCTTGTCATATGCTCACCGCCTTGTCCTCTACGTCATAAGAAAGGCCCTCCAAGGACAGACCCCTCAAACTTCTCGCAGCTCTACATCACCAACATCTCCAACCTACAACTCTTCCAAGAAAACCTTGCTCGCCTACTTCGAATCTAAGTAA

mRNA sequence

ATGGAGTGTGAGACAAAAGTGGAGGAGGAAGCGACCAAGGAGTTTGAGAAAGAAAGCAATAAAAATACTATGTTGGAGGAGAAAATGCCTAATGGCAAGAAGGAAGGAGGACAAGTATATGCAAAGATGCTCTTGCGGGCACAAGTAGAGAAAAGGCGAAAAGGAAAATTGGGATCTCGTCACCATCCATATGGCGAAGAGGAGGAAGTCTTAGGACCAAAGAGAAGACAACCATTTAAGGCTGAGGAATTCAATGACATCTTGTCATATGCTCACCGCCTTGTCCTCTACGTCATAAGAAAGGCCCTCCAAGGACAGACCCCTCAAACTTCTCGCAGCTCTACATCACCAACATCTCCAACCTACAACTCTTCCAAGAAAACCTTGCTCGCCTACTTCGAATCTAAGTAA

Coding sequence (CDS)

ATGGAGTGTGAGACAAAAGTGGAGGAGGAAGCGACCAAGGAGTTTGAGAAAGAAAGCAATAAAAATACTATGTTGGAGGAGAAAATGCCTAATGGCAAGAAGGAAGGAGGACAAGTATATGCAAAGATGCTCTTGCGGGCACAAGTAGAGAAAAGGCGAAAAGGAAAATTGGGATCTCGTCACCATCCATATGGCGAAGAGGAGGAAGTCTTAGGACCAAAGAGAAGACAACCATTTAAGGCTGAGGAATTCAATGACATCTTGTCATATGCTCACCGCCTTGTCCTCTACGTCATAAGAAAGGCCCTCCAAGGACAGACCCCTCAAACTTCTCGCAGCTCTACATCACCAACATCTCCAACCTACAACTCTTCCAAGAAAACCTTGCTCGCCTACTTCGAATCTAAGTAA

Protein sequence

MECETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSRHHPYGEEEEVLGPKRRQPFKAEEFNDILSYAHRLVLYVIRKALQGQTPQTSRSSTSPTSPTYNSSKKTLLAYFESK*

Homology

[Close]

BLAST of CsaV3_7G011500 vs. NCBI nr
Match: KGN44040.1 (hypothetical protein Csa_011856 [Cucumis sativus])

HSP 1 Score: 261.2 bits (666), Expect = 5.2e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MECETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSR 60
           MECETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSR
Sbjct: 1   MECETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSR 60

Query: 61  HHPYGEEEEVLGPKRRQPFKAEEFNDILSYAHRLVLYVIRKALQGQTPQTSRSSTSPTSP 120
           HHPYGEEEEVLGPKRRQPFKAEEFNDILSYAHRLVLYVIRKALQGQTPQTSRSSTSPTSP
Sbjct: 61  HHPYGEEEEVLGPKRRQPFKAEEFNDILSYAHRLVLYVIRKALQGQTPQTSRSSTSPTSP 120

Query: 121 TYNSSKKTLLAYFESK 137
           TYNSSKKTLLAYFESK
Sbjct: 121 TYNSSKKTLLAYFESK 136

[Close]

BLAST of CsaV3_7G011500 vs. NCBI nr
Match: KGN65003.1 (hypothetical protein Csa_022689 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 3.2e-07
Identity = 34/60 (56.67%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 4  ETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSRHHP 63
          ETKV ++  +EFEKE  +NT+ EEK+PN KKE GQVY++ LL+AQVE+ +K ++G  HHP
Sbjct: 39 ETKVGKDVAEEFEKEKTRNTLSEEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 98

[Close]

BLAST of CsaV3_7G011500 vs. NCBI nr
Match: KGN49676.1 (hypothetical protein Csa_018379 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-05
Identity = 52/128 (40.62%), Postives = 63/128 (49.22%), Query Frame = 0


Query: 1   MECETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSR 60
           +E ETKVEEEA +EFEKES+++T+ E++                                
Sbjct: 36  IELETKVEEEAAEEFEKESDRDTLSEKQ-------------------------------- 95

Query: 61  HHPYGEEEEVLGPKRRQPFKAEEFNDILSYAHRLVLYVIRKALQGQTPQTSRSSTSP--T 120
                EEEE LG K+ Q FKAEE NDILS  H L  Y I   LQGQ  QT  +S  P  +
Sbjct: 96  -----EEEEALGVKKGQSFKAEESNDILSKTHHLDFYAI---LQGQIVQTPHNSNFPMLS 123

Query: 121 SPTYNSSK 127
           SP   SSK
Sbjct: 156 SPNSLSSK 123

[Close]

BLAST of CsaV3_7G011500 vs. ExPASy TrEMBL
Match: A0A0A0K323 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G129390 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.5e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MECETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSR 60
           MECETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSR
Sbjct: 1   MECETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSR 60

Query: 61  HHPYGEEEEVLGPKRRQPFKAEEFNDILSYAHRLVLYVIRKALQGQTPQTSRSSTSPTSP 120
           HHPYGEEEEVLGPKRRQPFKAEEFNDILSYAHRLVLYVIRKALQGQTPQTSRSSTSPTSP
Sbjct: 61  HHPYGEEEEVLGPKRRQPFKAEEFNDILSYAHRLVLYVIRKALQGQTPQTSRSSTSPTSP 120

Query: 121 TYNSSKKTLLAYFESK 137
           TYNSSKKTLLAYFESK
Sbjct: 121 TYNSSKKTLLAYFESK 136

[Close]

BLAST of CsaV3_7G011500 vs. ExPASy TrEMBL
Match: A0A0A0LTC4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173720 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.5e-07
Identity = 34/60 (56.67%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 4  ETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSRHHP 63
          ETKV ++  +EFEKE  +NT+ EEK+PN KKE GQVY++ LL+AQVE+ +K ++G  HHP
Sbjct: 39 ETKVGKDVAEEFEKEKTRNTLSEEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 98

[Close]

BLAST of CsaV3_7G011500 vs. ExPASy TrEMBL
Match: A0A0A0KPM1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G057130 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.0e-06
Identity = 52/128 (40.62%), Postives = 63/128 (49.22%), Query Frame = 0


Query: 1   MECETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSR 60
           +E ETKVEEEA +EFEKES+++T+ E++                                
Sbjct: 36  IELETKVEEEAAEEFEKESDRDTLSEKQ-------------------------------- 95

Query: 61  HHPYGEEEEVLGPKRRQPFKAEEFNDILSYAHRLVLYVIRKALQGQTPQTSRSSTSP--T 120
                EEEE LG K+ Q FKAEE NDILS  H L  Y I   LQGQ  QT  +S  P  +
Sbjct: 96  -----EEEEALGVKKGQSFKAEESNDILSKTHHLDFYAI---LQGQIVQTPHNSNFPMLS 123

Query: 121 SPTYNSSK 127
           SP   SSK
Sbjct: 156 SPNSLSSK 123

The following BLAST results are available for this feature:

BLAST of CsaV3_7G011500 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44040.1	5.2e-66	100.00	hypothetical protein Csa_011856 [Cucumis sativus]	[more]
KGN65003.1	3.2e-07	56.67	hypothetical protein Csa_022689 [Cucumis sativus]	[more]
KGN49676.1	1.0e-05	40.63	hypothetical protein Csa_018379 [Cucumis sativus]	[more]

BLAST of CsaV3_7G011500 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G011500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K323	2.5e-66	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G129390 PE=4 SV=1	[more]
A0A0A0LTC4	1.5e-07	56.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173720 PE=4 SV=1	[more]
A0A0A0KPM1	5.0e-06	40.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G057130 PE=4 SV=1	[more]

BLAST of CsaV3_7G011500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 8..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G011500.1	CsaV3_7G011500.1	mRNA