Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGCCTTCCCAAGGTTTATTTGGAATACAATCAAGGGTAGAGGAAGATTTTCTTAGGCACACATTTCAAACTACTTGAAAAGGTAATTCTAAGATGGAAGATTACGTATGGGAGTCTTGTTCCTCTTCGTTCCTTAATTTCACAGGTCTTATTGAGGTTAGATGAAGTTTACAACCCCTTAACTGTTGTTATTCAAGGAAAATCCAACATCTCTTGGCTGGATATGCAGTCGGAATTACTAATATTTGAAAAACGCCTTGAGCATCAGAACTCACAAAAAAATCATGCCAATAATGATGCTCGACAACCTGGAAACTCATATCCACACAATAGTAATCAATCAAATGGAAATAGTCAGCGTGGAGGTAACAACTTCCATAATAGTGGTAGTCGTGGTCCTGGCCGAGGAAGAAGAAACAAACCAACGTGCCAAGTATGTGGCAAATATGGGCACTCTGCACTGGTATGTAACAACTGGTTTAGTAAGGAATTTTCTGGAAATTTCAATCTGAACAGAGGGTAGAATATTAACACTCCCACTCCATGTAACTCAAATCAGAATCCCACTCCCTTTGTCACCACTTATAATACTAATCCCTTTGCAACACCAGAGACGGTTATTGATTACTGGTATATTGATAGTGGGGCAACAAACCATGTGACAGTGGACTACTCAAACTTGTCAAACCCTTCTGAATACTCAGGTATTGAGCATGTTATTGTTGGAAATGGTAGTAAGTTACAAATTTCTTGCATTGGGAATTCAAATTTATCTGATGGGAAAAGCAACATAA
mRNA sequence
ATGGGAAGCCTTCCCAAGGTCTTATTGAGGTTAGATGAAGTTTACAACCCCTTAACTGTTGTTATTCAAGGAAAATCCAACATCTCTTGGCTGGATATGCAGTCGGAATTACTAATATTTGAAAAACGCCTTGAGCATCAGAACTCACAAAAAAATCATGCCAATAATGATGCTCGACAACCTGGAAACTCATATCCACACAATAGTAATCAATCAAATGGAAATAGTCAGCGTGGAGGTAACAACTTCCATAATAGTGGTAGTCGTGGTCCTGGCCGAGGAAGAAGAAACAAACCAACGTGCCAAGTATGTGGCAAATATGGGCACTCTGCACTGAATATTAACACTCCCACTCCATGTAACTCAAATCAGAATCCCACTCCCTTTGTCACCACTTATAATACTAATCCCTTTGCAACACCAGAGACGGTATTGAGCATGTTATTGTTGGAAATGGTAGTAAGTTACAAATTTCTTGCATTGGGAATTCAAATTTATCTGATGGGAAAAGCAACATAA
Coding sequence (CDS)
ATGGGAAGCCTTCCCAAGGTCTTATTGAGGTTAGATGAAGTTTACAACCCCTTAACTGTTGTTATTCAAGGAAAATCCAACATCTCTTGGCTGGATATGCAGTCGGAATTACTAATATTTGAAAAACGCCTTGAGCATCAGAACTCACAAAAAAATCATGCCAATAATGATGCTCGACAACCTGGAAACTCATATCCACACAATAGTAATCAATCAAATGGAAATAGTCAGCGTGGAGGTAACAACTTCCATAATAGTGGTAGTCGTGGTCCTGGCCGAGGAAGAAGAAACAAACCAACGTGCCAAGTATGTGGCAAATATGGGCACTCTGCACTGAATATTAACACTCCCACTCCATGTAACTCAAATCAGAATCCCACTCCCTTTGTCACCACTTATAATACTAATCCCTTTGCAACACCAGAGACGGTATTGAGCATGTTATTGTTGGAAATGGTAGTAAGTTACAAATTTCTTGCATTGGGAATTCAAATTTATCTGATGGGAAAAGCAACATAA
Protein sequence
MGSLPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQPGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSALNINTPTPCNSNQNPTPFVTTYNTNPFATPETVLSMLLLEMVVSYKFLALGIQIYLMGKAT*
Homology
BLAST of CsaV3_7G011420 vs. NCBI nr
Match:
KGN44034.1 (hypothetical protein Csa_011882 [Cucumis sativus])
HSP 1 Score: 335.5 bits (859), Expect = 2.7e-88
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0
Query: 1 MGSLPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQ 60
MGSLPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQ
Sbjct: 1 MGSLPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQ 60
Query: 61 PGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSALNINTPTPC 120
PGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSALNINTPTPC
Sbjct: 61 PGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSALNINTPTPC 120
Query: 121 NSNQNPTPFVTTYNTNPFATPETVLSMLLLEMVVSYKFLALGIQIYLMGKAT 173
NSNQNPTPFVTTYNTNPFATPETVLSMLLLEMVVSYKFLALGIQIYLMGKAT
Sbjct: 121 NSNQNPTPFVTTYNTNPFATPETVLSMLLLEMVVSYKFLALGIQIYLMGKAT 172
BLAST of CsaV3_7G011420 vs. NCBI nr
Match:
TYK05754.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 111.7 bits (278), Expect = 6.4e-21
Identity = 79/175 (45.14%), Postives = 99/175 (56.57%), Query Frame = 0
Query: 4 LPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHAN-------- 63
+ + LL LDEVYNP+ VIQGK ISW+DMQSELL FEKRLEHQ++QKN N
Sbjct: 118 ISQALLGLDEVYNPVIAVIQGKPEISWIDMQSELLTFEKRLEHQDTQKNTENIIQNVVNI 177
Query: 64 ------NDARQPGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGH 123
+D R+ N H +N++N QRGG N RG G+GR NKPTCQVC KYGH
Sbjct: 178 AQNRNSSDFRKYSNHQFHGNNRNNSQGQRGGFNI----GRGRGKGRGNKPTCQVCEKYGH 237
Query: 124 SAL------NINTPTPC-----------NSNQNPTPFVTTYNTNPFATPETVLSM 148
SAL N +P + + N T VT + N FAT +TV+++
Sbjct: 238 SALVCYNRFNKEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINL 288
BLAST of CsaV3_7G011420 vs. NCBI nr
Match:
XP_016902203.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo])
HSP 1 Score: 105.1 bits (261), Expect = 6.0e-19
Identity = 74/157 (47.13%), Postives = 92/157 (58.60%), Query Frame = 0
Query: 11 LDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQP----GNSYP 70
LDEVYN + VVIQGK +ISWLDMQS+LLIFEKRL+HQN+QK + N + P +
Sbjct: 170 LDEVYNLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFA 229
Query: 71 HNSNQSNGNSQ-RGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSAL--------NINTP 130
N ++ N + G N H SG RG N PTCQ+CGKYGHSAL ++P
Sbjct: 230 LNGQRNQSNKKFYGYNRQHFSGQRG---NLNNGPTCQLCGKYGHSALVCYNRFNKEFSSP 289
Query: 131 TPCNSNQ---------NPTPFVTTYNTNPFATPETVL 146
N N+ NP FV+T N PFATP+TV+
Sbjct: 290 LVQNRNEHSSNGSVSPNPAVFVSTQNATPFATPDTVV 323
BLAST of CsaV3_7G011420 vs. NCBI nr
Match:
XP_016902197.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo])
HSP 1 Score: 105.1 bits (261), Expect = 6.0e-19
Identity = 74/157 (47.13%), Postives = 92/157 (58.60%), Query Frame = 0
Query: 11 LDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQP----GNSYP 70
LDEVYN + VVIQGK +ISWLDMQS+LLIFEKRL+HQN+QK + N + P +
Sbjct: 170 LDEVYNLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFA 229
Query: 71 HNSNQSNGNSQ-RGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSAL--------NINTP 130
N ++ N + G N H SG RG N PTCQ+CGKYGHSAL ++P
Sbjct: 230 LNGQRNQSNKKFYGYNRQHFSGQRG---NLNNGPTCQLCGKYGHSALVCYNRFNKEFSSP 289
Query: 131 TPCNSNQ---------NPTPFVTTYNTNPFATPETVL 146
N N+ NP FV+T N PFATP+TV+
Sbjct: 290 LVQNRNEHSSNGSVSPNPAVFVSTQNATPFATPDTVV 323
BLAST of CsaV3_7G011420 vs. NCBI nr
Match:
KAA0026100.1 (uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa])
HSP 1 Score: 100.5 bits (249), Expect = 1.5e-17
Identity = 75/166 (45.18%), Postives = 96/166 (57.83%), Query Frame = 0
Query: 4 LPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQK------NHANND 63
+ +VLL LDEVYN + VVIQGK +ISWLDMQS+LLIFEK L+HQN+QK N +
Sbjct: 200 ISQVLLGLDEVYNLVIVVIQGKPDISWLDMQSKLLIFEKILKHQNTQKKKKKKGNITQSP 259
Query: 64 ARQPGNSYPHNSNQSNGNSQ-RGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSAL---- 123
A + N +++ N + G N H SG RG N PTCQ+CGKYGHSAL
Sbjct: 260 ALNMAQRFALNGQRNHSNKKFYGYNRQHFSGQRG---NLNNGPTCQLCGKYGHSALVCYN 319
Query: 124 ----NINTPTPCNSNQ---------NPTPFVTTYNTNPFATPETVL 146
++P + N+ NP FV+T N PFATP+TV+
Sbjct: 320 RFNKEFSSPLVQDRNEHSSNGSVSPNPAVFVSTQNATPFATPDTVV 362
BLAST of CsaV3_7G011420 vs. ExPASy TrEMBL
Match:
A0A0A0K542 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G122350 PE=4 SV=1)
HSP 1 Score: 335.5 bits (859), Expect = 1.3e-88
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0
Query: 1 MGSLPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQ 60
MGSLPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQ
Sbjct: 1 MGSLPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQ 60
Query: 61 PGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSALNINTPTPC 120
PGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSALNINTPTPC
Sbjct: 61 PGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSALNINTPTPC 120
Query: 121 NSNQNPTPFVTTYNTNPFATPETVLSMLLLEMVVSYKFLALGIQIYLMGKAT 173
NSNQNPTPFVTTYNTNPFATPETVLSMLLLEMVVSYKFLALGIQIYLMGKAT
Sbjct: 121 NSNQNPTPFVTTYNTNPFATPETVLSMLLLEMVVSYKFLALGIQIYLMGKAT 172
BLAST of CsaV3_7G011420 vs. ExPASy TrEMBL
Match:
A0A5D3C373 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002430 PE=4 SV=1)
HSP 1 Score: 111.7 bits (278), Expect = 3.1e-21
Identity = 79/175 (45.14%), Postives = 99/175 (56.57%), Query Frame = 0
Query: 4 LPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHAN-------- 63
+ + LL LDEVYNP+ VIQGK ISW+DMQSELL FEKRLEHQ++QKN N
Sbjct: 118 ISQALLGLDEVYNPVIAVIQGKPEISWIDMQSELLTFEKRLEHQDTQKNTENIIQNVVNI 177
Query: 64 ------NDARQPGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGH 123
+D R+ N H +N++N QRGG N RG G+GR NKPTCQVC KYGH
Sbjct: 178 AQNRNSSDFRKYSNHQFHGNNRNNSQGQRGGFNI----GRGRGKGRGNKPTCQVCEKYGH 237
Query: 124 SAL------NINTPTPC-----------NSNQNPTPFVTTYNTNPFATPETVLSM 148
SAL N +P + + N T VT + N FAT +TV+++
Sbjct: 238 SALVCYNRFNKEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINL 288
BLAST of CsaV3_7G011420 vs. ExPASy TrEMBL
Match:
A0A1S4E1U6 (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)
HSP 1 Score: 105.1 bits (261), Expect = 2.9e-19
Identity = 74/157 (47.13%), Postives = 92/157 (58.60%), Query Frame = 0
Query: 11 LDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQP----GNSYP 70
LDEVYN + VVIQGK +ISWLDMQS+LLIFEKRL+HQN+QK + N + P +
Sbjct: 170 LDEVYNLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFA 229
Query: 71 HNSNQSNGNSQ-RGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSAL--------NINTP 130
N ++ N + G N H SG RG N PTCQ+CGKYGHSAL ++P
Sbjct: 230 LNGQRNQSNKKFYGYNRQHFSGQRG---NLNNGPTCQLCGKYGHSALVCYNRFNKEFSSP 289
Query: 131 TPCNSNQ---------NPTPFVTTYNTNPFATPETVL 146
N N+ NP FV+T N PFATP+TV+
Sbjct: 290 LVQNRNEHSSNGSVSPNPAVFVSTQNATPFATPDTVV 323
BLAST of CsaV3_7G011420 vs. ExPASy TrEMBL
Match:
A0A1S4E1V2 (uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)
HSP 1 Score: 105.1 bits (261), Expect = 2.9e-19
Identity = 74/157 (47.13%), Postives = 92/157 (58.60%), Query Frame = 0
Query: 11 LDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQP----GNSYP 70
LDEVYN + VVIQGK +ISWLDMQS+LLIFEKRL+HQN+QK + N + P +
Sbjct: 170 LDEVYNLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFA 229
Query: 71 HNSNQSNGNSQ-RGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSAL--------NINTP 130
N ++ N + G N H SG RG N PTCQ+CGKYGHSAL ++P
Sbjct: 230 LNGQRNQSNKKFYGYNRQHFSGQRG---NLNNGPTCQLCGKYGHSALVCYNRFNKEFSSP 289
Query: 131 TPCNSNQ---------NPTPFVTTYNTNPFATPETVL 146
N N+ NP FV+T N PFATP+TV+
Sbjct: 290 LVQNRNEHSSNGSVSPNPAVFVSTQNATPFATPDTVV 323
BLAST of CsaV3_7G011420 vs. ExPASy TrEMBL
Match:
A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)
HSP 1 Score: 100.5 bits (249), Expect = 7.1e-18
Identity = 75/166 (45.18%), Postives = 96/166 (57.83%), Query Frame = 0
Query: 4 LPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQK------NHANND 63
+ +VLL LDEVYN + VVIQGK +ISWLDMQS+LLIFEK L+HQN+QK N +
Sbjct: 200 ISQVLLGLDEVYNLVIVVIQGKPDISWLDMQSKLLIFEKILKHQNTQKKKKKKGNITQSP 259
Query: 64 ARQPGNSYPHNSNQSNGNSQ-RGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSAL---- 123
A + N +++ N + G N H SG RG N PTCQ+CGKYGHSAL
Sbjct: 260 ALNMAQRFALNGQRNHSNKKFYGYNRQHFSGQRG---NLNNGPTCQLCGKYGHSALVCYN 319
Query: 124 ----NINTPTPCNSNQ---------NPTPFVTTYNTNPFATPETVL 146
++P + N+ NP FV+T N PFATP+TV+
Sbjct: 320 RFNKEFSSPLVQDRNEHSSNGSVSPNPAVFVSTQNATPFATPDTVV 362
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KGN44034.1 | 2.7e-88 | 100.00 | hypothetical protein Csa_011882 [Cucumis sativus] | [more] |
TYK05754.1 | 6.4e-21 | 45.14 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
XP_016902203.1 | 6.0e-19 | 47.13 | PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo] | [more] |
XP_016902197.1 | 6.0e-19 | 47.13 | PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo] | [more] |
KAA0026100.1 | 1.5e-17 | 45.18 | uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0K542 | 1.3e-88 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G122350 PE=4 SV=1 | [more] |
A0A5D3C373 | 3.1e-21 | 45.14 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A1S4E1U6 | 2.9e-19 | 47.13 | uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... | [more] |
A0A1S4E1V2 | 2.9e-19 | 47.13 | uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... | [more] |
A0A5A7SIT7 | 7.1e-18 | 45.18 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |