CsaV3_7G011420 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G011420
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr7: 6228365 .. 6229163 (-)
RNA-Seq ExpressionCsaV3_7G011420
SyntenyCsaV3_7G011420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGCCTTCCCAAGGTTTATTTGGAATACAATCAAGGGTAGAGGAAGATTTTCTTAGGCACACATTTCAAACTACTTGAAAAGGTAATTCTAAGATGGAAGATTACGTATGGGAGTCTTGTTCCTCTTCGTTCCTTAATTTCACAGGTCTTATTGAGGTTAGATGAAGTTTACAACCCCTTAACTGTTGTTATTCAAGGAAAATCCAACATCTCTTGGCTGGATATGCAGTCGGAATTACTAATATTTGAAAAACGCCTTGAGCATCAGAACTCACAAAAAAATCATGCCAATAATGATGCTCGACAACCTGGAAACTCATATCCACACAATAGTAATCAATCAAATGGAAATAGTCAGCGTGGAGGTAACAACTTCCATAATAGTGGTAGTCGTGGTCCTGGCCGAGGAAGAAGAAACAAACCAACGTGCCAAGTATGTGGCAAATATGGGCACTCTGCACTGGTATGTAACAACTGGTTTAGTAAGGAATTTTCTGGAAATTTCAATCTGAACAGAGGGTAGAATATTAACACTCCCACTCCATGTAACTCAAATCAGAATCCCACTCCCTTTGTCACCACTTATAATACTAATCCCTTTGCAACACCAGAGACGGTTATTGATTACTGGTATATTGATAGTGGGGCAACAAACCATGTGACAGTGGACTACTCAAACTTGTCAAACCCTTCTGAATACTCAGGTATTGAGCATGTTATTGTTGGAAATGGTAGTAAGTTACAAATTTCTTGCATTGGGAATTCAAATTTATCTGATGGGAAAAGCAACATAA

mRNA sequence

ATGGGAAGCCTTCCCAAGGTCTTATTGAGGTTAGATGAAGTTTACAACCCCTTAACTGTTGTTATTCAAGGAAAATCCAACATCTCTTGGCTGGATATGCAGTCGGAATTACTAATATTTGAAAAACGCCTTGAGCATCAGAACTCACAAAAAAATCATGCCAATAATGATGCTCGACAACCTGGAAACTCATATCCACACAATAGTAATCAATCAAATGGAAATAGTCAGCGTGGAGGTAACAACTTCCATAATAGTGGTAGTCGTGGTCCTGGCCGAGGAAGAAGAAACAAACCAACGTGCCAAGTATGTGGCAAATATGGGCACTCTGCACTGAATATTAACACTCCCACTCCATGTAACTCAAATCAGAATCCCACTCCCTTTGTCACCACTTATAATACTAATCCCTTTGCAACACCAGAGACGGTATTGAGCATGTTATTGTTGGAAATGGTAGTAAGTTACAAATTTCTTGCATTGGGAATTCAAATTTATCTGATGGGAAAAGCAACATAA

Coding sequence (CDS)

ATGGGAAGCCTTCCCAAGGTCTTATTGAGGTTAGATGAAGTTTACAACCCCTTAACTGTTGTTATTCAAGGAAAATCCAACATCTCTTGGCTGGATATGCAGTCGGAATTACTAATATTTGAAAAACGCCTTGAGCATCAGAACTCACAAAAAAATCATGCCAATAATGATGCTCGACAACCTGGAAACTCATATCCACACAATAGTAATCAATCAAATGGAAATAGTCAGCGTGGAGGTAACAACTTCCATAATAGTGGTAGTCGTGGTCCTGGCCGAGGAAGAAGAAACAAACCAACGTGCCAAGTATGTGGCAAATATGGGCACTCTGCACTGAATATTAACACTCCCACTCCATGTAACTCAAATCAGAATCCCACTCCCTTTGTCACCACTTATAATACTAATCCCTTTGCAACACCAGAGACGGTATTGAGCATGTTATTGTTGGAAATGGTAGTAAGTTACAAATTTCTTGCATTGGGAATTCAAATTTATCTGATGGGAAAAGCAACATAA

Protein sequence

MGSLPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQPGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSALNINTPTPCNSNQNPTPFVTTYNTNPFATPETVLSMLLLEMVVSYKFLALGIQIYLMGKAT*
Homology
BLAST of CsaV3_7G011420 vs. NCBI nr
Match: KGN44034.1 (hypothetical protein Csa_011882 [Cucumis sativus])

HSP 1 Score: 335.5 bits (859), Expect = 2.7e-88
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0

Query: 1   MGSLPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQ 60
           MGSLPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQ
Sbjct: 1   MGSLPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQ 60

Query: 61  PGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSALNINTPTPC 120
           PGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSALNINTPTPC
Sbjct: 61  PGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSALNINTPTPC 120

Query: 121 NSNQNPTPFVTTYNTNPFATPETVLSMLLLEMVVSYKFLALGIQIYLMGKAT 173
           NSNQNPTPFVTTYNTNPFATPETVLSMLLLEMVVSYKFLALGIQIYLMGKAT
Sbjct: 121 NSNQNPTPFVTTYNTNPFATPETVLSMLLLEMVVSYKFLALGIQIYLMGKAT 172

BLAST of CsaV3_7G011420 vs. NCBI nr
Match: TYK05754.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 6.4e-21
Identity = 79/175 (45.14%), Postives = 99/175 (56.57%), Query Frame = 0

Query: 4   LPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHAN-------- 63
           + + LL LDEVYNP+  VIQGK  ISW+DMQSELL FEKRLEHQ++QKN  N        
Sbjct: 118 ISQALLGLDEVYNPVIAVIQGKPEISWIDMQSELLTFEKRLEHQDTQKNTENIIQNVVNI 177

Query: 64  ------NDARQPGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGH 123
                 +D R+  N   H +N++N   QRGG N      RG G+GR NKPTCQVC KYGH
Sbjct: 178 AQNRNSSDFRKYSNHQFHGNNRNNSQGQRGGFNI----GRGRGKGRGNKPTCQVCEKYGH 237

Query: 124 SAL------NINTPTPC-----------NSNQNPTPFVTTYNTNPFATPETVLSM 148
           SAL      N    +P            + + N T  VT  + N FAT +TV+++
Sbjct: 238 SALVCYNRFNKEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINL 288

BLAST of CsaV3_7G011420 vs. NCBI nr
Match: XP_016902203.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 6.0e-19
Identity = 74/157 (47.13%), Postives = 92/157 (58.60%), Query Frame = 0

Query: 11  LDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQP----GNSYP 70
           LDEVYN + VVIQGK +ISWLDMQS+LLIFEKRL+HQN+QK +  N  + P       + 
Sbjct: 170 LDEVYNLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFA 229

Query: 71  HNSNQSNGNSQ-RGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSAL--------NINTP 130
            N  ++  N +  G N  H SG RG      N PTCQ+CGKYGHSAL          ++P
Sbjct: 230 LNGQRNQSNKKFYGYNRQHFSGQRG---NLNNGPTCQLCGKYGHSALVCYNRFNKEFSSP 289

Query: 131 TPCNSNQ---------NPTPFVTTYNTNPFATPETVL 146
              N N+         NP  FV+T N  PFATP+TV+
Sbjct: 290 LVQNRNEHSSNGSVSPNPAVFVSTQNATPFATPDTVV 323

BLAST of CsaV3_7G011420 vs. NCBI nr
Match: XP_016902197.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 6.0e-19
Identity = 74/157 (47.13%), Postives = 92/157 (58.60%), Query Frame = 0

Query: 11  LDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQP----GNSYP 70
           LDEVYN + VVIQGK +ISWLDMQS+LLIFEKRL+HQN+QK +  N  + P       + 
Sbjct: 170 LDEVYNLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFA 229

Query: 71  HNSNQSNGNSQ-RGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSAL--------NINTP 130
            N  ++  N +  G N  H SG RG      N PTCQ+CGKYGHSAL          ++P
Sbjct: 230 LNGQRNQSNKKFYGYNRQHFSGQRG---NLNNGPTCQLCGKYGHSALVCYNRFNKEFSSP 289

Query: 131 TPCNSNQ---------NPTPFVTTYNTNPFATPETVL 146
              N N+         NP  FV+T N  PFATP+TV+
Sbjct: 290 LVQNRNEHSSNGSVSPNPAVFVSTQNATPFATPDTVV 323

BLAST of CsaV3_7G011420 vs. NCBI nr
Match: KAA0026100.1 (uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-17
Identity = 75/166 (45.18%), Postives = 96/166 (57.83%), Query Frame = 0

Query: 4   LPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQK------NHANND 63
           + +VLL LDEVYN + VVIQGK +ISWLDMQS+LLIFEK L+HQN+QK      N   + 
Sbjct: 200 ISQVLLGLDEVYNLVIVVIQGKPDISWLDMQSKLLIFEKILKHQNTQKKKKKKGNITQSP 259

Query: 64  ARQPGNSYPHNSNQSNGNSQ-RGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSAL---- 123
           A      +  N  +++ N +  G N  H SG RG      N PTCQ+CGKYGHSAL    
Sbjct: 260 ALNMAQRFALNGQRNHSNKKFYGYNRQHFSGQRG---NLNNGPTCQLCGKYGHSALVCYN 319

Query: 124 ----NINTPTPCNSNQ---------NPTPFVTTYNTNPFATPETVL 146
                 ++P   + N+         NP  FV+T N  PFATP+TV+
Sbjct: 320 RFNKEFSSPLVQDRNEHSSNGSVSPNPAVFVSTQNATPFATPDTVV 362

BLAST of CsaV3_7G011420 vs. ExPASy TrEMBL
Match: A0A0A0K542 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G122350 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.3e-88
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0

Query: 1   MGSLPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQ 60
           MGSLPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQ
Sbjct: 1   MGSLPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQ 60

Query: 61  PGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSALNINTPTPC 120
           PGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSALNINTPTPC
Sbjct: 61  PGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSALNINTPTPC 120

Query: 121 NSNQNPTPFVTTYNTNPFATPETVLSMLLLEMVVSYKFLALGIQIYLMGKAT 173
           NSNQNPTPFVTTYNTNPFATPETVLSMLLLEMVVSYKFLALGIQIYLMGKAT
Sbjct: 121 NSNQNPTPFVTTYNTNPFATPETVLSMLLLEMVVSYKFLALGIQIYLMGKAT 172

BLAST of CsaV3_7G011420 vs. ExPASy TrEMBL
Match: A0A5D3C373 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002430 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.1e-21
Identity = 79/175 (45.14%), Postives = 99/175 (56.57%), Query Frame = 0

Query: 4   LPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHAN-------- 63
           + + LL LDEVYNP+  VIQGK  ISW+DMQSELL FEKRLEHQ++QKN  N        
Sbjct: 118 ISQALLGLDEVYNPVIAVIQGKPEISWIDMQSELLTFEKRLEHQDTQKNTENIIQNVVNI 177

Query: 64  ------NDARQPGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGH 123
                 +D R+  N   H +N++N   QRGG N      RG G+GR NKPTCQVC KYGH
Sbjct: 178 AQNRNSSDFRKYSNHQFHGNNRNNSQGQRGGFNI----GRGRGKGRGNKPTCQVCEKYGH 237

Query: 124 SAL------NINTPTPC-----------NSNQNPTPFVTTYNTNPFATPETVLSM 148
           SAL      N    +P            + + N T  VT  + N FAT +TV+++
Sbjct: 238 SALVCYNRFNKEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINL 288

BLAST of CsaV3_7G011420 vs. ExPASy TrEMBL
Match: A0A1S4E1U6 (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.9e-19
Identity = 74/157 (47.13%), Postives = 92/157 (58.60%), Query Frame = 0

Query: 11  LDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQP----GNSYP 70
           LDEVYN + VVIQGK +ISWLDMQS+LLIFEKRL+HQN+QK +  N  + P       + 
Sbjct: 170 LDEVYNLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFA 229

Query: 71  HNSNQSNGNSQ-RGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSAL--------NINTP 130
            N  ++  N +  G N  H SG RG      N PTCQ+CGKYGHSAL          ++P
Sbjct: 230 LNGQRNQSNKKFYGYNRQHFSGQRG---NLNNGPTCQLCGKYGHSALVCYNRFNKEFSSP 289

Query: 131 TPCNSNQ---------NPTPFVTTYNTNPFATPETVL 146
              N N+         NP  FV+T N  PFATP+TV+
Sbjct: 290 LVQNRNEHSSNGSVSPNPAVFVSTQNATPFATPDTVV 323

BLAST of CsaV3_7G011420 vs. ExPASy TrEMBL
Match: A0A1S4E1V2 (uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.9e-19
Identity = 74/157 (47.13%), Postives = 92/157 (58.60%), Query Frame = 0

Query: 11  LDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQP----GNSYP 70
           LDEVYN + VVIQGK +ISWLDMQS+LLIFEKRL+HQN+QK +  N  + P       + 
Sbjct: 170 LDEVYNLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFA 229

Query: 71  HNSNQSNGNSQ-RGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSAL--------NINTP 130
            N  ++  N +  G N  H SG RG      N PTCQ+CGKYGHSAL          ++P
Sbjct: 230 LNGQRNQSNKKFYGYNRQHFSGQRG---NLNNGPTCQLCGKYGHSALVCYNRFNKEFSSP 289

Query: 131 TPCNSNQ---------NPTPFVTTYNTNPFATPETVL 146
              N N+         NP  FV+T N  PFATP+TV+
Sbjct: 290 LVQNRNEHSSNGSVSPNPAVFVSTQNATPFATPDTVV 323

BLAST of CsaV3_7G011420 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 7.1e-18
Identity = 75/166 (45.18%), Postives = 96/166 (57.83%), Query Frame = 0

Query: 4   LPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQK------NHANND 63
           + +VLL LDEVYN + VVIQGK +ISWLDMQS+LLIFEK L+HQN+QK      N   + 
Sbjct: 200 ISQVLLGLDEVYNLVIVVIQGKPDISWLDMQSKLLIFEKILKHQNTQKKKKKKGNITQSP 259

Query: 64  ARQPGNSYPHNSNQSNGNSQ-RGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSAL---- 123
           A      +  N  +++ N +  G N  H SG RG      N PTCQ+CGKYGHSAL    
Sbjct: 260 ALNMAQRFALNGQRNHSNKKFYGYNRQHFSGQRG---NLNNGPTCQLCGKYGHSALVCYN 319

Query: 124 ----NINTPTPCNSNQ---------NPTPFVTTYNTNPFATPETVL 146
                 ++P   + N+         NP  FV+T N  PFATP+TV+
Sbjct: 320 RFNKEFSSPLVQDRNEHSSNGSVSPNPAVFVSTQNATPFATPDTVV 362

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN44034.12.7e-88100.00hypothetical protein Csa_011882 [Cucumis sativus][more]
TYK05754.16.4e-2145.14Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
XP_016902203.16.0e-1947.13PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo][more]
XP_016902197.16.0e-1947.13PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo][more]
KAA0026100.11.5e-1745.18uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K5421.3e-88100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G122350 PE=4 SV=1[more]
A0A5D3C3733.1e-2145.14Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A1S4E1U62.9e-1947.13uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S4E1V22.9e-1947.13uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5A7SIT77.1e-1845.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G011420.1CsaV3_7G011420.1mRNA