CsaV3_7G011410 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G011410
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Transposase
Location	chr7: 6219694 .. 6220008 (-)
RNA-Seq Expression	CsaV3_7G011410
Synteny	CsaV3_7G011410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAGTCATGGATGACCCAAAATAGGATGTCAAGAGAATATGATTTAGGAGTCAAAAGGTTCATTAAATTTGGGTTGAGTCATGCCAAAGGTCTTAATTCAATTAGATGTCCATGTTTGAATTGCGACAATCGTTTACTTAAGGATGTCTCAACAGTTCGATACCATTTGTATGCCAATGGAATTGATAAGAGTTACAAGGTATGGTTCTGGCATGGTGAAGAATTGAACTCAGATAACGTTACCAACACGATGGAAAATACAGTGGATGAAACTAATGAAAACGACGATTTATTTAATACAATTAATATG

mRNA sequence

ATGGACAAGTCATGGATGACCCAAAATAGGATGTCAAGAGAATATGATTTAGGAGTCAAAAGGTTCATTAAATTTGGGTTGAGTCATGCCAAAGGTCTTAATTCAATTAGATGTCCATGTTTGAATTGCGACAATCGTTTACTTAAGGATGTCTCAACAGTTCGATACCATTTGTATGCCAATGGAATTGATAAGAGTTACAAGGTATGGTTCTGGCATGGTGAAGAATTGAACTCAGATAACGTTACCAACACGATGGAAAATACAGTGGATGAAACTAATGAAAACGACGATTTATTTAATACAATTAATATG

Coding sequence (CDS)

ATGGACAAGTCATGGATGACCCAAAATAGGATGTCAAGAGAATATGATTTAGGAGTCAAAAGGTTCATTAAATTTGGGTTGAGTCATGCCAAAGGTCTTAATTCAATTAGATGTCCATGTTTGAATTGCGACAATCGTTTACTTAAGGATGTCTCAACAGTTCGATACCATTTGTATGCCAATGGAATTGATAAGAGTTACAAGGTATGGTTCTGGCATGGTGAAGAATTGAACTCAGATAACGTTACCAACACGATGGAAAATACAGTGGATGAAACTAATGAAAACGACGATTTATTTAATACAATTAATATG

Protein sequence

MDKSWMTQNRMSREYDLGVKRFIKFGLSHAKGLNSIRCPCLNCDNRLLKDVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVTNTMENTVDETNENDDLFNTINM

Homology

[Close]

BLAST of CsaV3_7G011410 vs. NCBI nr
Match: KAE8645902.1 (hypothetical protein Csa_011865, partial [Cucumis sativus])

HSP 1 Score: 222.6 bits (566), Expect = 1.6e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MDKSWMTQNRMSREYDLGVKRFIKFGLSHAKGLNSIRCPCLNCDNRLLKDVSTVRYHLYA 60
           MDKSWMTQNRMSREYDLGVKRFIKFGLSHAKGLNSIRCPCLNCDNRLLKDVSTVRYHLYA
Sbjct: 1   MDKSWMTQNRMSREYDLGVKRFIKFGLSHAKGLNSIRCPCLNCDNRLLKDVSTVRYHLYA 60

Query: 61  NGIDKSYKVWFWHGEELNSDNVTNTMENTVDETNENDDLFNTINM 106
           NGIDKSYKVWFWHGEELNSDNVTNTMENTVDETNENDDLFNTINM
Sbjct: 61  NGIDKSYKVWFWHGEELNSDNVTNTMENTVDETNENDDLFNTINM 105

[Close]

BLAST of CsaV3_7G011410 vs. NCBI nr
Match: XP_031744682.1 (uncharacterized protein LOC116405119 [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 3.3e-52
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 1   MDKSWMTQNRMSREYDLGVKRFIKFGLSHAKGLNSIRCPCLNCDNRLLKDVSTVRYHLYA 60
           MDKSWMTQNRMSREYDLGV+RFIKFGLSHAKGLNSIRCPCLNCDNRLLKDVSTVRYHLYA
Sbjct: 1   MDKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCDNRLLKDVSTVRYHLYA 60

Query: 61  NGIDKSYKVWFWHGEELNSDNVTNTMENTVDETNENDDLFNTINM 106
           NGIDKSYKVWFWHGEELNSDNV NTME TVDET+ENDDLFNTINM
Sbjct: 61  NGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINM 105

[Close]

BLAST of CsaV3_7G011410 vs. NCBI nr
Match: XP_031741418.1 (uncharacterized protein LOC116403845 [Cucumis sativus] >XP_031741419.1 uncharacterized protein LOC116403845 [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 4.3e-52
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 1   MDKSWMTQNRMSREYDLGVKRFIKFGLSHAKGLNSIRCPCLNCDNRLLKDVSTVRYHLYA 60
           MDKSWMTQNRMSREYDLGV+RFIKFGLSHAKGLNSIRCPCLNC NRLLKDVSTVRYHLYA
Sbjct: 1   MDKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYA 60

Query: 61  NGIDKSYKVWFWHGEELNSDNVTNTMENTVDETNENDDLFNTINM 106
           NGIDKSYKVWFWHGEELNSDNV NTMENTVDET+ENDDLFNTINM
Sbjct: 61  NGIDKSYKVWFWHGEELNSDNVANTMENTVDETDENDDLFNTINM 105

[Close]

BLAST of CsaV3_7G011410 vs. NCBI nr
Match: XP_031742855.1 (uncharacterized protein LOC116404482 [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 4.3e-52
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 1   MDKSWMTQNRMSREYDLGVKRFIKFGLSHAKGLNSIRCPCLNCDNRLLKDVSTVRYHLYA 60
           MDKSWMTQNRMSREYDLGV+RFIKFGLSHAKGLNSIRCPCLNC NRLLKDVSTVRYHLYA
Sbjct: 1   MDKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYA 60

Query: 61  NGIDKSYKVWFWHGEELNSDNVTNTMENTVDETNENDDLFNTINM 106
           NGIDKSYKVWFWHGEELNSDNV NTMENTVDET+ENDDLFNTINM
Sbjct: 61  NGIDKSYKVWFWHGEELNSDNVANTMENTVDETDENDDLFNTINM 105

[Close]

BLAST of CsaV3_7G011410 vs. NCBI nr
Match: KAE8647232.1 (hypothetical protein Csa_019076, partial [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 4.3e-52
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 1   MDKSWMTQNRMSREYDLGVKRFIKFGLSHAKGLNSIRCPCLNCDNRLLKDVSTVRYHLYA 60
           MDKSWMTQNRMSREYDLGV+RFIKFGLSHAKGLNSIRCPCLNC NRLLKDVSTVRYHLYA
Sbjct: 1   MDKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYA 60

Query: 61  NGIDKSYKVWFWHGEELNSDNVTNTMENTVDETNENDDLFNTINM 106
           NGIDKSYKVWFWHGEELNSDNV NTMENTVDET+ENDDLFNTINM
Sbjct: 61  NGIDKSYKVWFWHGEELNSDNVANTMENTVDETDENDDLFNTINM 105

[Close]

BLAST of CsaV3_7G011410 vs. ExPASy TrEMBL
Match: A0A5D3C1B5 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold148G00300 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.3e-42
Identity = 83/105 (79.05%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 1   MDKSWMTQNRMSREYDLGVKRFIKFGLSHAKGLNSIRCPCLNCDNRLLKDVSTVRYHLYA 60
           MDKSWM +NRMSREYD+GV+ FI+FGLSHAKG NSIRCPCL C NRLLKDVS VRYHLYA
Sbjct: 1   MDKSWMMENRMSREYDVGVESFIQFGLSHAKGSNSIRCPCLKCGNRLLKDVSIVRYHLYA 60

Query: 61  NGIDKSYKVWFWHGEELNSDNVTNTMENTVDETNENDDLFNTINM 106
           NGIDKSYK+WFWHGE+LNS+ VT+ MEN  DE  E+DDLFNT+NM
Sbjct: 61  NGIDKSYKIWFWHGEDLNSETVTSKMENLGDEKYEHDDLFNTVNM 105

[Close]

BLAST of CsaV3_7G011410 vs. ExPASy TrEMBL
Match: A0A5D3D5Q1 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00970 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.3e-42
Identity = 83/105 (79.05%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 1   MDKSWMTQNRMSREYDLGVKRFIKFGLSHAKGLNSIRCPCLNCDNRLLKDVSTVRYHLYA 60
           MDKSWM +NRMSREYD+GV+ FI+FGLSHAKG NSIRCPCL C NRLLKDVS VRYHLYA
Sbjct: 1   MDKSWMMENRMSREYDVGVESFIQFGLSHAKGSNSIRCPCLKCGNRLLKDVSIVRYHLYA 60

Query: 61  NGIDKSYKVWFWHGEELNSDNVTNTMENTVDETNENDDLFNTINM 106
           NGIDKSYK+WFWHGE+LNS+ VT+ MEN  DE  E+DDLFNT+NM
Sbjct: 61  NGIDKSYKIWFWHGEDLNSETVTSKMENLGDEKYEHDDLFNTVNM 105

[Close]

BLAST of CsaV3_7G011410 vs. ExPASy TrEMBL
Match: A0A5D3D2T0 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003090 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.4e-42
Identity = 82/105 (78.10%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 1   MDKSWMTQNRMSREYDLGVKRFIKFGLSHAKGLNSIRCPCLNCDNRLLKDVSTVRYHLYA 60
           MDKSWM +NRMSREYD+GV+ FI+FGLSHAKG NSIRCPCL C NRLLKDVS VRYHLYA
Sbjct: 1   MDKSWMMENRMSREYDIGVESFIQFGLSHAKGYNSIRCPCLKCGNRLLKDVSIVRYHLYA 60

Query: 61  NGIDKSYKVWFWHGEELNSDNVTNTMENTVDETNENDDLFNTINM 106
           +GIDKSYK+WFWHGE+LNS+ VT+ MEN  DE  E+DDLFNT+NM
Sbjct: 61  SGIDKSYKIWFWHGEDLNSETVTSKMENIGDEKYEHDDLFNTVNM 105

[Close]

BLAST of CsaV3_7G011410 vs. ExPASy TrEMBL
Match: A0A5A7TJY9 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005150 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.4e-42
Identity = 82/105 (78.10%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 1   MDKSWMTQNRMSREYDLGVKRFIKFGLSHAKGLNSIRCPCLNCDNRLLKDVSTVRYHLYA 60
           MDKSWM +NRMSREYD+GV+ FI+FGLSHAKG NSIRCPCL C NRLLKDVS VRYHLYA
Sbjct: 1   MDKSWMMENRMSREYDIGVESFIQFGLSHAKGYNSIRCPCLKCGNRLLKDVSIVRYHLYA 60

Query: 61  NGIDKSYKVWFWHGEELNSDNVTNTMENTVDETNENDDLFNTINM 106
           +GIDKSYK+WFWHGE+LNS+ VT+ MEN  DE  E+DDLFNT+NM
Sbjct: 61  SGIDKSYKIWFWHGEDLNSETVTSKMENIGDEKYEHDDLFNTVNM 105

[Close]

BLAST of CsaV3_7G011410 vs. ExPASy TrEMBL
Match: A0A5D3DSZ9 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold7319G00190 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 9.6e-42
Identity = 84/105 (80.00%), Postives = 92/105 (87.62%), Query Frame = 0


Query: 1   MDKSWMTQNRMSREYDLGVKRFIKFGLSHAKGLNSIRCPCLNCDNRLLKDVSTVRYHLYA 60
           MDKS M +NRMSREYD+GVK FI+FGLSHAKG NSIRCPCL C+NRLLKDVS VRYHLYA
Sbjct: 1   MDKSSMMENRMSREYDVGVKSFIQFGLSHAKGSNSIRCPCLKCENRLLKDVSIVRYHLYA 60

Query: 61  NGIDKSYKVWFWHGEELNSDNVTNTMENTVDETNENDDLFNTINM 106
           NGIDKSYK+WFWHGE+LNS  VT+ MEN VDE  E DDLFNT+NM
Sbjct: 61  NGIDKSYKIWFWHGEDLNSKTVTSKMENIVDEKYEQDDLFNTVNM 105

The following BLAST results are available for this feature:

BLAST of CsaV3_7G011410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645902.1	1.6e-54	100.00	hypothetical protein Csa_011865, partial [Cucumis sativus]	[more]
XP_031744682.1	3.3e-52	96.19	uncharacterized protein LOC116405119 [Cucumis sativus]	[more]
XP_031741418.1	4.3e-52	96.19	uncharacterized protein LOC116403845 [Cucumis sativus] >XP_031741419.1 uncharact...	[more]
XP_031742855.1	4.3e-52	96.19	uncharacterized protein LOC116404482 [Cucumis sativus]	[more]
KAE8647232.1	4.3e-52	96.19	hypothetical protein Csa_019076, partial [Cucumis sativus]	[more]

BLAST of CsaV3_7G011410 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G011410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C1B5	3.3e-42	79.05	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold148G00300 PE...	[more]
A0A5D3D5Q1	3.3e-42	79.05	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00970 PE...	[more]
A0A5D3D2T0	7.4e-42	78.10	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003090 P...	[more]
A0A5A7TJY9	7.4e-42	78.10	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005150 PE...	[more]
A0A5D3DSZ9	9.6e-42	80.00	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold7319G00190 P...	[more]

BLAST of CsaV3_7G011410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029480	Transposase-associated domain	PFAM	PF13963	Transpos_assoc	coord: 3..75 e-value: 3.0E-21 score: 75.3
None	No IPR available	PANTHER	PTHR10775:SF149	TRANSPOSASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN-RELATED	coord: 1..100
None	No IPR available	PANTHER	PTHR10775	UNCHARACTERIZED	coord: 1..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G011410.1	CsaV3_7G011410.1	mRNA